Wall clock time and date at job start Wed Apr 1 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47105 * 2 1 4 4 H 1.09005 * 109.29644 * 304.58099 * 3 2 1 5 5 C 1.52913 * 109.30073 * 185.00104 * 3 2 1 6 6 C 1.53348 * 108.67412 * 188.93321 * 5 3 2 7 7 H 1.08997 * 109.67355 * 187.25645 * 6 5 3 8 8 C 1.50699 * 109.67450 * 307.79602 * 6 5 3 9 9 O 1.21282 * 120.00140 * 96.41024 * 8 6 5 10 10 N 1.34772 * 119.99930 * 276.41367 * 8 6 5 11 11 C 1.46501 * 120.00219 * 179.97438 * 10 8 6 12 12 H 1.09003 * 109.46851 * 325.00479 * 11 10 8 13 13 C 1.53002 * 109.47356 * 205.00182 * 11 10 8 14 14 C 1.50695 * 109.46955 * 65.00012 * 13 11 10 15 15 H 1.07998 * 120.00341 * 359.97438 * 14 13 11 16 16 C 1.37877 * 119.99501 * 180.02562 * 14 13 11 17 17 N 1.31512 * 120.00275 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99779 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47087 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47289 * 119.99572 * 18 16 14 21 21 H 1.48501 * 109.47081 * 240.00014 * 18 16 14 22 22 C 1.50699 * 109.46917 * 85.00005 * 11 10 8 23 23 C 1.38238 * 119.99934 * 39.72764 * 22 11 10 24 24 C 1.38238 * 119.99631 * 179.76356 * 23 22 11 25 25 C 1.38233 * 120.00026 * 0.48873 * 24 23 22 26 26 C 1.38235 * 120.00208 * 359.79088 * 25 24 23 27 27 C 1.38231 * 119.99812 * 359.95364 * 26 25 24 28 28 C 1.53077 * 108.42434 * 67.52832 * 6 5 3 29 29 C 1.50178 * 109.89069 * 311.10054 * 28 6 5 30 30 O 1.21283 * 118.24592 * 197.56220 * 29 28 6 31 31 N 1.33354 * 123.51020 * 17.58432 * 29 28 6 32 32 H 1.09001 * 109.47494 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47428 * 300.00377 * 1 2 3 34 34 H 1.08999 * 109.47147 * 60.00674 * 1 2 3 35 35 H 1.08995 * 109.47428 * 239.99623 * 2 1 3 36 36 H 1.09000 * 109.46649 * 119.99505 * 2 1 3 37 37 H 1.09009 * 109.60045 * 308.68456 * 5 3 2 38 38 H 1.09000 * 109.60933 * 69.01319 * 5 3 2 39 39 H 0.97001 * 119.99857 * 359.97438 * 10 8 6 40 40 H 1.08998 * 109.46709 * 185.00409 * 13 11 10 41 41 H 1.09007 * 109.46640 * 305.00008 * 13 11 10 42 42 H 0.97000 * 120.00164 * 180.02562 * 17 16 14 43 43 H 1.07994 * 120.00076 * 359.97438 * 23 22 11 44 44 H 1.07996 * 119.99763 * 180.25359 * 24 23 22 45 45 H 1.08001 * 119.99783 * 179.76309 * 25 24 23 46 46 H 1.07997 * 119.99864 * 179.97438 * 26 25 24 47 47 H 1.07997 * 119.99926 * 180.02562 * 27 26 25 48 48 H 1.08997 * 109.40263 * 71.22686 * 28 6 5 49 49 H 1.09000 * 109.39925 * 191.05816 * 28 6 5 50 50 H 0.96993 * 117.94583 * 177.78035 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6095 1.9768 -0.8471 5 6 3.5639 1.4398 -0.1258 6 6 4.0778 2.8669 0.0999 7 1 5.1460 2.9101 -0.1122 8 6 3.3411 3.8205 -0.8051 9 8 2.3842 4.4369 -0.3865 10 7 3.7456 3.9882 -2.0797 11 6 3.0292 4.9148 -2.9597 12 1 1.9658 4.8935 -2.7212 13 6 3.2336 4.4954 -4.4169 14 6 2.5929 3.1510 -4.6472 15 1 2.0906 2.6459 -3.8354 16 6 2.6490 2.5652 -5.8941 17 7 3.2611 3.1799 -6.8825 18 14 1.8555 0.8983 -6.1794 19 1 1.2366 0.4219 -4.9163 20 1 0.8107 1.0204 -7.2277 21 1 2.8887 -0.0727 -6.6208 22 6 3.5611 6.3105 -2.7594 23 6 4.9172 6.5152 -2.5864 24 6 5.4056 7.7960 -2.4075 25 6 4.5367 8.8710 -2.3915 26 6 3.1800 8.6658 -2.5588 27 6 2.6922 7.3856 -2.7430 28 6 3.8269 3.2460 1.5616 29 6 2.4087 2.9244 1.9366 30 8 1.9458 3.4438 2.9301 31 7 1.6312 2.0980 1.2360 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 1.8932 -0.5138 0.8901 37 1 3.9916 0.7743 0.6242 38 1 3.8482 1.0994 -1.1215 39 1 4.5112 3.4955 -2.4144 40 1 2.7756 5.2337 -5.0751 41 1 4.3006 4.4307 -4.6300 42 1 3.3002 2.7680 -7.7598 43 1 5.5955 5.6748 -2.5943 44 1 6.4655 7.9563 -2.2764 45 1 4.9179 9.8713 -2.2479 46 1 2.5012 9.5057 -2.5459 47 1 1.6323 7.2253 -2.8740 48 1 4.5069 2.6854 2.2029 49 1 4.0019 4.3137 1.6939 50 1 0.7376 1.9222 1.5698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346009568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:33 Heat of formation + Delta-G solvation = -72.554955 kcal Electronic energy + Delta-G solvation = -31498.672532 eV Core-core repulsion = 27489.416922 eV Total energy + Delta-G solvation = -4009.255609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.88730 -39.33367 -38.30361 -36.82898 -35.27232 -33.83322 -32.79460 -31.99851 -31.01930 -30.46743 -29.07443 -28.84152 -25.70647 -24.67779 -23.22643 -22.32110 -21.99218 -21.68068 -20.79254 -19.85217 -18.85045 -17.25181 -16.90976 -16.42496 -16.21579 -16.16384 -15.46142 -15.24958 -14.92520 -14.71410 -14.57873 -14.17444 -14.12648 -13.76083 -13.56512 -13.41283 -13.29834 -13.01336 -12.68445 -12.63746 -12.43687 -12.15704 -11.95255 -11.93335 -11.61394 -11.44521 -11.24725 -11.18808 -11.02336 -10.96460 -10.84686 -10.78185 -10.64246 -10.50649 -9.84181 -9.59753 -9.41741 -9.28820 -8.88532 -8.58611 -8.51316 -8.46702 -8.20680 -6.15674 -4.19444 1.75996 1.78475 2.88943 3.00896 3.19330 3.28896 3.30291 3.44357 3.61825 4.20629 4.32778 4.46983 4.49146 4.57603 4.74433 5.01948 5.03269 5.13284 5.21430 5.24418 5.25247 5.29573 5.35015 5.38890 5.46189 5.52354 5.56688 5.65972 5.69952 5.81332 5.85741 5.88317 5.91159 5.92009 6.05922 6.13838 6.19223 6.33130 6.41053 6.53661 6.82355 6.83572 6.85945 6.94168 7.07585 7.38479 7.43444 7.54301 7.56805 7.80616 8.05377 8.19166 8.42852 8.69332 8.86409 9.45672 10.94883 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.006754 B = 0.005587 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4144.473022 B = 5010.064232 C = 8312.317346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C 0.136 3.864 4 H 0.083 0.917 5 C -0.120 4.120 6 C -0.115 4.115 7 H 0.104 0.896 8 C 0.510 3.490 9 O -0.538 6.538 10 N -0.697 5.697 11 C 0.185 3.815 12 H 0.086 0.914 13 C 0.024 3.976 14 C -0.519 4.519 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.889 3.111 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.071 4.071 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.135 4.135 26 C -0.122 4.122 27 C -0.108 4.108 28 C -0.115 4.115 29 C 0.540 3.460 30 O -0.570 6.570 31 N -0.706 5.706 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.400 0.600 40 H 0.033 0.967 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.102 0.898 49 H 0.103 0.897 50 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.159 -2.134 11.229 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.031 3.969 4 H 0.100 0.900 5 C -0.158 4.158 6 C -0.137 4.137 7 H 0.122 0.878 8 C 0.295 3.705 9 O -0.415 6.415 10 N -0.346 5.346 11 C 0.081 3.919 12 H 0.104 0.896 13 C -0.014 4.014 14 C -0.557 4.557 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.717 3.283 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.072 4.072 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.153 4.153 26 C -0.140 4.140 27 C -0.126 4.126 28 C -0.155 4.155 29 C 0.327 3.673 30 O -0.450 6.450 31 N -0.358 5.358 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.235 0.765 40 H 0.051 0.949 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.137 0.863 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 3.501 -1.396 11.738 12.329 hybrid contribution -0.319 -1.180 -0.651 1.385 sum 3.182 -2.576 11.087 11.819 Atomic orbital electron populations 1.21796 0.95439 1.01963 1.02173 1.21900 0.96694 0.95506 1.03070 1.21044 0.94961 0.93380 0.87545 0.89951 1.21896 0.94527 0.94860 1.04534 1.21483 1.01884 0.95512 0.94777 0.87775 1.20308 0.84725 0.82642 0.82813 1.90723 1.27802 1.48136 1.74824 1.45980 1.33769 1.44243 1.10596 1.20232 0.95829 0.82813 0.93039 0.89648 1.19392 0.98067 0.97058 0.86849 1.21130 1.35621 1.03195 0.95725 0.92371 1.24987 0.95300 0.97660 0.96161 1.69963 1.42827 1.38340 1.01799 0.86581 0.79224 0.84125 0.78351 1.19664 1.21021 1.21037 1.20535 0.93634 0.96483 0.96590 1.20891 0.95051 0.96647 1.00071 1.21041 0.99143 0.92961 1.01170 1.20999 0.93701 0.98428 1.02149 1.21046 0.95440 0.96797 1.00753 1.21014 0.99694 0.92286 0.99652 1.21471 0.94256 1.04706 0.95103 1.19760 0.88227 0.77158 0.82138 1.90712 1.74481 1.51706 1.28065 1.45447 1.17789 1.47069 1.25469 0.92343 0.92881 0.91991 0.90114 0.91380 0.89923 0.88584 0.76508 0.94851 0.95738 0.92889 0.86588 0.86738 0.86841 0.86628 0.86279 0.87962 0.87900 0.76889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.75 37.16 0.36 -1.20 16 2 C -0.13 -1.31 5.58 -26.73 -0.15 -1.46 16 3 C 0.14 1.64 2.39 -68.37 -0.16 1.47 16 4 H 0.08 1.25 7.27 -51.93 -0.38 0.87 16 5 C -0.12 -1.21 4.93 -26.60 -0.13 -1.34 16 6 C -0.11 -1.31 3.07 -91.55 -0.28 -1.59 16 7 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 8 C 0.51 8.01 5.57 -10.99 -0.06 7.95 16 9 O -0.54 -10.54 14.31 5.56 0.08 -10.46 16 10 N -0.70 -11.21 4.02 -54.93 -0.22 -11.43 16 11 C 0.19 3.54 2.12 -69.08 -0.15 3.40 16 12 H 0.09 1.82 7.44 -51.93 -0.39 1.44 16 13 C 0.02 0.54 4.50 -27.88 -0.13 0.41 16 14 C -0.52 -12.83 8.84 -34.44 -0.30 -13.14 16 15 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.89 -24.60 13.29 55.43 0.74 -23.86 16 18 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C -0.07 -1.28 4.91 -104.62 -0.51 -1.79 16 23 C -0.11 -1.75 9.33 -39.58 -0.37 -2.12 16 24 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 25 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 26 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 27 C -0.11 -1.86 9.67 -39.58 -0.38 -2.25 16 28 C -0.12 -1.42 5.21 -28.10 -0.15 -1.57 16 29 C 0.54 8.41 6.39 -11.87 -0.08 8.33 16 30 O -0.57 -11.11 17.78 5.56 0.10 -11.01 16 31 N -0.71 -9.56 4.93 -54.85 -0.27 -9.83 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.51 6.63 -51.93 -0.34 0.16 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.66 8.11 -51.92 -0.42 0.24 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.40 5.78 8.60 -40.82 -0.35 5.43 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.12 1.71 7.71 -52.49 -0.40 1.30 16 44 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 47 H 0.12 1.99 8.04 -52.49 -0.42 1.57 16 48 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.10 1.40 8.10 -51.93 -0.42 0.98 16 50 H 0.39 5.18 6.98 -40.82 -0.28 4.89 16 LS Contribution 405.40 15.07 6.11 6.11 Total: -1.00 -32.74 405.40 -10.29 -43.04 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -8.03 Total: 12.77 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -3.78 Total: -10.16 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.25 Total: -45.12 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: 0.18 Total: -21.47 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.74 -10.29 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346009568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.517 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds