Wall clock time and date at job start Wed Apr 1 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47152 * 2 1 4 4 H 1.08998 * 109.29870 * 305.41812 * 3 2 1 5 5 C 1.52919 * 109.30091 * 186.03822 * 3 2 1 6 6 C 1.53349 * 108.67190 * 188.93442 * 5 3 2 7 7 H 1.08995 * 109.67453 * 307.79951 * 6 5 3 8 8 C 1.50701 * 109.67281 * 187.26599 * 6 5 3 9 9 O 1.21280 * 120.00097 * 359.97438 * 8 6 5 10 10 N 1.34776 * 119.99995 * 180.02562 * 8 6 5 11 11 C 1.46501 * 120.00182 * 175.14547 * 10 8 6 12 12 H 1.09001 * 109.46812 * 326.66976 * 11 10 8 13 13 C 1.52993 * 109.47412 * 86.66739 * 11 10 8 14 14 C 1.50694 * 109.47425 * 185.72026 * 13 11 10 15 15 H 1.08005 * 119.99766 * 355.54040 * 14 13 11 16 16 C 1.37875 * 120.00496 * 175.54216 * 14 13 11 17 17 N 1.31512 * 119.99924 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00199 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47259 * 59.99969 * 18 16 14 20 20 H 1.48499 * 109.47423 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47007 * 299.99892 * 18 16 14 22 22 C 1.50695 * 109.47069 * 206.67102 * 11 10 8 23 23 C 1.38241 * 120.00017 * 319.72572 * 22 11 10 24 24 C 1.38237 * 119.99808 * 179.81230 * 23 22 11 25 25 C 1.38231 * 120.00282 * 0.39594 * 24 23 22 26 26 C 1.38236 * 119.99940 * 359.85018 * 25 24 23 27 27 C 1.38236 * 120.00170 * 139.99685 * 22 11 10 28 28 C 1.53073 * 108.42296 * 67.53135 * 6 5 3 29 29 C 1.50194 * 109.83578 * 310.88768 * 28 6 5 30 30 O 1.21272 * 118.26058 * 197.79081 * 29 28 6 31 31 N 1.33349 * 123.49118 * 18.07132 * 29 28 6 32 32 H 1.09004 * 109.47095 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46934 * 299.99135 * 1 2 3 34 34 H 1.08992 * 109.47772 * 60.00027 * 1 2 3 35 35 H 1.09002 * 109.47166 * 240.00364 * 2 1 3 36 36 H 1.09003 * 109.47308 * 120.00161 * 2 1 3 37 37 H 1.08994 * 109.60215 * 308.68887 * 5 3 2 38 38 H 1.08993 * 109.60391 * 69.02000 * 5 3 2 39 39 H 0.97003 * 119.99933 * 355.13353 * 10 8 6 40 40 H 1.09005 * 109.47363 * 305.71919 * 13 11 10 41 41 H 1.08999 * 109.47132 * 65.71598 * 13 11 10 42 42 H 0.96996 * 120.00385 * 179.97438 * 17 16 14 43 43 H 1.08002 * 119.99567 * 359.97438 * 23 22 11 44 44 H 1.08004 * 119.99500 * 180.22153 * 24 23 22 45 45 H 1.08003 * 120.00341 * 179.83559 * 25 24 23 46 46 H 1.07999 * 119.99841 * 179.97438 * 26 25 24 47 47 H 1.07994 * 120.00013 * 359.97438 * 27 22 11 48 48 H 1.09008 * 109.40181 * 71.22918 * 28 6 5 49 49 H 1.09003 * 109.39991 * 191.05035 * 28 6 5 50 50 H 0.97000 * 117.94567 * 177.50112 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9809 -0.8384 5 6 3.5616 1.4406 -0.1518 6 6 4.0793 2.8664 0.0737 7 1 3.5353 3.5600 -0.5674 8 6 5.5510 2.9280 -0.2445 9 8 6.1335 1.9310 -0.6154 10 7 6.2201 4.0909 -0.1159 11 6 7.6701 4.1283 -0.3219 12 1 8.1088 3.1878 0.0112 13 6 7.9689 4.3322 -1.8084 14 6 9.4544 4.2306 -2.0408 15 1 10.1252 4.1117 -1.2027 16 6 9.9573 4.2895 -3.3232 17 7 9.1405 4.4338 -4.3438 18 14 11.7987 4.1642 -3.6111 19 1 12.2938 2.8644 -3.0910 20 1 12.0795 4.2548 -5.0665 21 1 12.4868 5.2745 -2.9047 22 6 8.2607 5.2664 0.4699 23 6 7.6011 6.4796 0.5338 24 6 8.1410 7.5222 1.2633 25 6 9.3444 7.3544 1.9223 26 6 10.0066 6.1428 1.8544 27 6 9.4649 5.0989 1.1279 28 6 3.8534 3.2365 1.5418 29 6 2.4399 2.9168 1.9363 30 8 1.9924 3.4338 2.9379 31 7 1.6525 2.0904 1.2468 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8901 34 1 -0.3634 0.5138 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 4.0019 0.7706 0.5866 38 1 3.8287 1.1064 -1.1543 39 1 5.7416 4.9030 0.1129 40 1 7.4569 3.5659 -2.3905 41 1 7.6194 5.3173 -2.1176 42 1 9.4942 4.4755 -5.2460 43 1 6.6627 6.6119 0.0158 44 1 7.6238 8.4689 1.3161 45 1 9.7676 8.1699 2.4902 46 1 10.9470 6.0119 2.3689 47 1 9.9821 4.1524 1.0748 48 1 4.5444 2.6720 2.1679 49 1 4.0308 4.3033 1.6776 50 1 0.7647 1.9125 1.5948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346009570.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:42 Heat of formation + Delta-G solvation = -72.020584 kcal Electronic energy + Delta-G solvation = -30324.052107 eV Core-core repulsion = 26314.819670 eV Total energy + Delta-G solvation = -4009.232437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.88918 -39.56505 -38.56640 -37.20828 -35.18406 -34.10462 -32.80661 -32.29846 -31.05228 -30.45161 -29.24403 -28.59336 -25.96452 -24.79732 -23.22247 -22.39453 -22.12880 -21.98921 -20.27621 -19.60929 -19.42824 -17.67506 -17.20610 -16.75272 -16.35400 -15.98371 -15.52328 -15.28275 -14.87007 -14.71494 -14.69281 -14.45475 -14.09158 -14.06136 -13.74776 -13.58542 -13.39173 -13.01889 -12.96276 -12.76213 -12.48753 -12.25599 -12.13749 -11.73473 -11.55821 -11.51356 -11.31952 -11.23765 -11.12131 -11.07374 -10.83631 -10.78217 -10.65576 -10.25043 -10.09913 -9.90951 -9.46170 -9.31839 -9.10108 -8.57882 -8.49535 -8.35277 -8.07043 -6.00887 -4.02395 1.79205 1.82789 2.45411 2.92350 3.05379 3.33788 3.37693 3.38984 3.47410 4.22481 4.23337 4.39631 4.40533 4.48806 4.55878 4.74168 4.78092 4.89955 5.07392 5.20208 5.23417 5.25406 5.26510 5.32425 5.35535 5.37701 5.49647 5.51291 5.52625 5.61639 5.70354 5.82467 5.87857 5.89080 5.96184 6.03363 6.16600 6.36065 6.47724 6.55063 6.68946 6.78530 6.84166 6.88228 7.11342 7.12288 7.40729 7.57911 7.67710 7.93960 7.97720 8.00759 8.34156 8.59938 9.01772 9.60753 11.10740 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010999 B = 0.003084 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.044351 B = 9078.148542 C =11095.108020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C 0.138 3.862 4 H 0.079 0.921 5 C -0.112 4.112 6 C -0.112 4.112 7 H 0.103 0.897 8 C 0.516 3.484 9 O -0.528 6.528 10 N -0.720 5.720 11 C 0.181 3.819 12 H 0.088 0.912 13 C 0.026 3.974 14 C -0.514 4.514 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.050 4.050 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.134 4.134 26 C -0.121 4.121 27 C -0.099 4.099 28 C -0.126 4.126 29 C 0.526 3.474 30 O -0.559 6.559 31 N -0.714 5.714 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.392 0.608 40 H 0.032 0.968 41 H 0.015 0.985 42 H 0.261 0.739 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.107 0.893 49 H 0.106 0.894 50 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.949 -2.492 10.577 17.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.174 4.174 3 C 0.033 3.967 4 H 0.097 0.903 5 C -0.150 4.150 6 C -0.134 4.134 7 H 0.121 0.879 8 C 0.301 3.699 9 O -0.404 6.404 10 N -0.371 5.371 11 C 0.078 3.922 12 H 0.106 0.894 13 C -0.012 4.012 14 C -0.552 4.552 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.050 4.050 23 C -0.138 4.138 24 C -0.139 4.139 25 C -0.152 4.152 26 C -0.139 4.139 27 C -0.118 4.118 28 C -0.166 4.166 29 C 0.313 3.687 30 O -0.438 6.438 31 N -0.368 5.368 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.226 0.774 40 H 0.050 0.950 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.140 0.860 48 H 0.125 0.875 49 H 0.124 0.876 50 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -13.508 -2.896 10.548 17.382 hybrid contribution 0.577 0.404 -0.304 0.767 sum -12.931 -2.492 10.244 16.684 Atomic orbital electron populations 1.21812 0.95456 1.02217 1.01841 1.21917 0.96320 0.95447 1.03745 1.21119 0.95757 0.93648 0.86160 0.90317 1.21775 0.92421 0.95420 1.05378 1.21464 0.95026 0.99824 0.97080 0.87858 1.20152 0.88226 0.83660 0.77894 1.90744 1.69364 1.34998 1.45304 1.46290 1.09610 1.10133 1.71062 1.20344 0.77078 0.96104 0.98669 0.89383 1.19403 0.97278 0.97527 0.86968 1.21036 0.91679 1.50098 0.92433 0.92383 1.24944 0.97693 0.95260 0.96198 1.69946 1.34454 1.50149 0.98754 0.86685 0.85827 0.78677 0.77029 1.20158 1.21337 1.20246 1.19940 0.95123 0.95116 0.94842 1.20826 1.00349 0.93053 0.99544 1.20984 0.96317 0.98391 0.98201 1.20988 0.95968 0.97306 1.00980 1.21050 0.99558 0.93548 0.99707 1.20983 0.95257 0.99356 0.96189 1.21652 0.93970 1.04898 0.96049 1.20047 0.87996 0.77872 0.82805 1.90765 1.74577 1.51892 1.26552 1.45707 1.18472 1.47155 1.25433 0.92178 0.92885 0.92256 0.89878 0.91019 0.90098 0.88345 0.77409 0.95011 0.96665 0.92979 0.86750 0.86685 0.86853 0.86607 0.86040 0.87529 0.87576 0.76639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 9.76 37.16 0.36 -0.46 16 2 C -0.14 -0.85 5.57 -26.73 -0.15 -0.99 16 3 C 0.14 1.03 3.07 -68.37 -0.21 0.82 16 4 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 5 C -0.11 -1.09 3.98 -26.59 -0.11 -1.20 16 6 C -0.11 -1.22 2.60 -91.55 -0.24 -1.45 16 7 H 0.10 0.97 8.13 -51.93 -0.42 0.55 16 8 C 0.52 8.04 7.10 -10.98 -0.08 7.96 16 9 O -0.53 -10.54 15.59 5.56 0.09 -10.45 16 10 N -0.72 -11.30 4.92 -54.94 -0.27 -11.57 16 11 C 0.18 3.55 2.19 -69.09 -0.15 3.40 16 12 H 0.09 1.88 7.46 -51.93 -0.39 1.50 16 13 C 0.03 0.65 4.73 -27.89 -0.13 0.52 16 14 C -0.51 -14.03 8.64 -34.44 -0.30 -14.32 16 15 H 0.06 1.52 6.43 -52.48 -0.34 1.19 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 18 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.05 -0.89 4.49 -104.62 -0.47 -1.36 16 23 C -0.12 -1.89 9.06 -39.58 -0.36 -2.25 16 24 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 25 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 26 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 27 C -0.10 -1.72 8.63 -39.58 -0.34 -2.06 16 28 C -0.13 -1.30 5.27 -28.09 -0.15 -1.45 16 29 C 0.53 6.01 7.71 -11.86 -0.09 5.92 16 30 O -0.56 -8.54 17.78 5.56 0.10 -8.44 16 31 N -0.71 -6.25 5.12 -54.85 -0.28 -6.53 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.27 6.67 -51.93 -0.35 -0.08 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.85 8.11 -51.93 -0.42 0.42 16 38 H 0.10 1.05 7.90 -51.93 -0.41 0.63 16 39 H 0.39 5.01 6.87 -40.82 -0.28 4.73 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.02 0.40 8.13 -51.93 -0.42 -0.03 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.11 1.61 6.91 -52.49 -0.36 1.25 16 44 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 45 H 0.11 1.30 8.06 -52.48 -0.42 0.87 16 46 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 47 H 0.12 2.07 7.83 -52.49 -0.41 1.66 16 48 H 0.11 1.13 8.09 -51.92 -0.42 0.71 16 49 H 0.11 1.01 8.12 -51.93 -0.42 0.59 16 50 H 0.40 3.14 7.04 -40.82 -0.29 2.86 16 LS Contribution 404.99 15.07 6.10 6.10 Total: -1.00 -34.64 404.99 -10.12 -44.76 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.87 Total: 7.32 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -3.70 Total: -11.96 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.19 Total: -43.95 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.19 Total: -18.89 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.64 -10.12 -44.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346009570.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.262 kcal (2) G-P(sol) polarization free energy of solvation -34.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds