Wall clock time and date at job start Wed Apr 1 2020 03:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47100 * 2 1 4 4 C 1.52999 * 109.46961 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.46807 * 179.97438 * 4 3 2 6 6 C 1.46849 * 110.99952 * 169.99614 * 5 4 3 7 7 C 1.53042 * 109.52612 * 185.83614 * 6 5 4 8 8 C 1.53118 * 109.27862 * 300.82522 * 7 6 5 9 9 N 1.46491 * 109.52369 * 177.55694 * 8 7 6 10 10 S 1.65605 * 120.00091 * 145.27318 * 9 8 7 11 11 O 1.42104 * 104.27775 * 180.79711 * 10 9 8 12 12 O 1.42096 * 104.27503 * 308.65499 * 10 9 8 13 13 C 1.81398 * 104.44862 * 64.72753 * 10 9 8 14 14 C 1.52997 * 109.47141 * 173.42361 * 13 10 9 15 15 C 1.50698 * 115.55147 * 65.26476 * 14 13 10 16 16 H 1.08005 * 120.00425 * 268.59660 * 15 14 13 17 17 C 1.37880 * 119.99949 * 88.59549 * 15 14 13 18 18 N 1.31512 * 120.00232 * 174.66253 * 17 15 14 19 19 Si 1.86801 * 120.00039 * 354.66064 * 17 15 14 20 20 H 1.48499 * 109.47053 * 92.56930 * 19 17 15 21 21 H 1.48496 * 109.47263 * 212.57419 * 19 17 15 22 22 H 1.48498 * 109.46965 * 332.57448 * 19 17 15 23 23 C 1.52995 * 117.49769 * 279.59900 * 14 13 10 24 24 C 1.53000 * 117.50028 * 210.93750 * 14 13 10 25 25 C 1.53121 * 109.15997 * 57.65026 * 8 7 6 26 26 C 1.46847 * 111.00181 * 294.20527 * 5 4 3 27 27 H 1.08996 * 109.47279 * 60.00312 * 1 2 3 28 28 H 1.09004 * 109.46928 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46940 * 299.99729 * 1 2 3 30 30 H 1.08995 * 109.47058 * 239.99700 * 2 1 3 31 31 H 1.09002 * 109.46932 * 119.99929 * 2 1 3 32 32 H 1.08997 * 109.46895 * 59.99983 * 3 2 1 33 33 H 1.08996 * 109.46800 * 299.99982 * 3 2 1 34 34 H 1.08995 * 109.47411 * 59.99569 * 4 3 2 35 35 H 1.09002 * 109.46718 * 299.99713 * 4 3 2 36 36 H 1.09006 * 109.45816 * 65.82584 * 6 5 4 37 37 H 1.09004 * 109.45507 * 305.85048 * 6 5 4 38 38 H 1.08995 * 109.50188 * 180.87837 * 7 6 5 39 39 H 1.08998 * 109.49720 * 60.76334 * 7 6 5 40 40 H 1.09008 * 109.52223 * 297.68421 * 8 7 6 41 41 H 0.97000 * 120.00052 * 324.99770 * 9 8 7 42 42 H 1.08998 * 109.46908 * 293.41891 * 13 10 9 43 43 H 1.09002 * 109.47133 * 53.41943 * 13 10 9 44 44 H 0.97001 * 120.00388 * 179.97438 * 18 17 15 45 45 H 1.09006 * 117.49958 * 359.97438 * 23 14 13 46 46 H 1.09002 * 117.50208 * 145.01782 * 23 14 13 47 47 H 1.08990 * 117.49945 * 214.97829 * 24 14 13 48 48 H 1.08999 * 117.49471 * 359.97438 * 24 14 13 49 49 H 1.08992 * 109.50262 * 62.28950 * 25 8 7 50 50 H 1.09007 * 109.50144 * 182.40673 * 25 8 7 51 51 H 1.09003 * 109.45999 * 294.18089 * 26 5 4 52 52 H 1.08998 * 109.46147 * 54.15772 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8275 -0.0013 6 6 5.5081 2.8737 0.2363 7 6 5.9576 4.3301 0.3737 8 6 5.6072 5.0905 -0.9083 9 7 5.9825 6.4988 -0.7603 10 16 6.5425 7.3482 -2.0670 11 8 6.8174 8.6435 -1.5512 12 8 7.5808 6.5344 -2.5950 13 6 5.1339 7.4033 -3.2085 14 6 5.4740 8.3075 -4.3950 15 6 6.5880 7.8201 -5.2852 16 1 7.6065 8.1220 -5.0902 17 6 6.3071 6.9888 -6.3486 18 7 7.2614 6.6480 -7.1870 19 14 4.5710 6.3463 -6.5987 20 1 3.8318 7.2585 -7.5079 21 1 4.6270 4.9887 -7.1978 22 1 3.8739 6.2811 -5.2891 23 6 5.3408 9.8182 -4.1929 24 6 4.3230 9.0684 -5.0561 25 6 4.1002 4.9860 -1.1586 26 6 3.7046 3.5106 -1.2517 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9336 0.9285 0.8892 36 1 6.0285 2.4106 -0.6021 37 1 5.7430 2.3330 1.1531 38 1 7.0351 4.3647 0.5344 39 1 5.4479 4.7899 1.2204 40 1 6.1481 4.6558 -1.7490 41 1 5.8991 6.9349 0.1021 42 1 4.9184 6.3973 -3.5685 43 1 4.2606 7.7983 -2.6893 44 1 7.0638 6.0628 -7.9349 45 1 5.0105 10.1679 -3.2147 46 1 6.0587 10.4596 -4.7041 47 1 4.3717 9.2169 -6.1347 48 1 3.3234 8.9246 -4.6460 49 1 3.5613 5.4561 -0.3361 50 1 3.8508 5.4893 -2.0928 51 1 4.2335 3.0445 -2.0830 52 1 2.6298 3.4327 -1.4156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346432259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:02 Heat of formation + Delta-G solvation = -61.880043 kcal Electronic energy + Delta-G solvation = -29769.476618 eV Core-core repulsion = 25896.127859 eV Total energy + Delta-G solvation = -3873.348759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.49203 -37.14526 -36.56137 -36.21443 -35.16445 -34.50554 -32.18057 -31.20337 -31.03962 -28.52844 -28.23799 -25.55722 -24.31723 -23.36036 -22.23651 -21.72242 -21.02564 -20.19186 -19.56575 -18.63332 -17.08256 -16.84990 -16.40721 -15.95623 -15.55909 -15.31653 -15.07267 -15.06137 -14.55860 -14.34820 -14.07070 -13.89183 -13.71390 -13.46931 -13.21544 -13.00638 -12.69263 -12.62945 -12.44214 -12.32680 -11.87573 -11.66798 -11.57220 -11.42610 -11.36154 -11.32260 -11.23449 -11.22165 -11.08111 -10.94991 -10.89695 -10.69011 -10.64457 -10.48197 -10.35085 -10.10283 -9.75751 -9.26036 -9.17022 -8.68027 -8.52123 -8.47257 -6.18615 -4.25981 0.94475 3.19784 3.29298 3.30045 3.34711 3.63571 4.32626 4.39779 4.49054 4.60598 4.67537 4.71056 4.80647 4.83709 4.85952 4.92902 5.01933 5.06368 5.09143 5.16968 5.23562 5.32353 5.35995 5.38950 5.46189 5.49003 5.53344 5.57245 5.65005 5.66990 5.69548 5.75266 5.80910 5.85092 5.95258 5.97193 5.99684 6.02826 6.04763 6.09083 6.19122 6.34871 6.42059 6.64903 6.86797 6.87853 6.89811 7.05584 7.22454 7.58257 8.35394 8.87032 9.42510 10.92906 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011511 B = 0.003434 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.957657 B = 8151.182794 C = 9396.387712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.118 4.118 4 C 0.054 3.946 5 N -0.539 5.539 6 C 0.056 3.944 7 C -0.116 4.116 8 C 0.146 3.854 9 N -1.126 6.126 10 S 2.613 3.387 11 O -0.969 6.969 12 O -0.941 6.941 13 C -0.577 4.577 14 C 0.002 3.998 15 C -0.509 4.509 16 H 0.087 0.913 17 C 0.089 3.911 18 N -0.882 5.882 19 Si 0.873 3.127 20 H -0.275 1.275 21 H -0.291 1.291 22 H -0.256 1.256 23 C -0.177 4.177 24 C -0.185 4.185 25 C -0.143 4.143 26 C 0.052 3.948 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.410 0.590 42 H 0.125 0.875 43 H 0.108 0.892 44 H 0.267 0.733 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.075 0.925 51 H 0.039 0.961 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.778 -10.647 16.291 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.073 4.073 5 N -0.264 5.264 6 C -0.073 4.073 7 C -0.156 4.156 8 C 0.038 3.962 9 N -0.881 5.881 10 S 2.709 3.291 11 O -0.960 6.960 12 O -0.931 6.931 13 C -0.709 4.709 14 C -0.001 4.001 15 C -0.546 4.546 16 H 0.105 0.895 17 C -0.116 4.116 18 N -0.518 5.518 19 Si 0.701 3.299 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.181 1.181 23 C -0.214 4.214 24 C -0.224 4.224 25 C -0.182 4.182 26 C -0.076 4.076 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.243 0.757 42 H 0.143 0.857 43 H 0.126 0.874 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.114 0.886 47 H 0.110 0.890 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.094 0.906 51 H 0.057 0.943 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.004 -10.249 16.242 22.135 hybrid contribution -1.354 -0.866 -0.793 1.792 sum -12.358 -11.115 15.449 22.692 Atomic orbital electron populations 1.21762 0.95775 1.01507 1.01907 1.21495 0.95977 0.96821 1.01921 1.21647 0.94548 0.96552 1.02821 1.22121 0.95613 0.88801 1.00812 1.61973 1.13820 1.15399 1.35206 1.22082 0.87305 0.96828 1.01053 1.21825 1.01648 0.94497 0.97603 1.20837 0.94657 0.81123 0.99599 1.56041 1.85127 1.20178 1.26785 1.04966 0.76868 0.73473 0.73827 1.93517 1.84152 1.40097 1.78187 1.93579 1.51777 1.68679 1.79020 1.30390 1.17798 1.09575 1.13098 1.18845 0.98027 0.88941 0.94261 1.20351 0.92877 1.30535 1.10865 0.89548 1.24948 0.96938 0.94838 0.94877 1.69895 1.32892 1.34679 1.14299 0.86932 0.85506 0.78156 0.79339 1.20108 1.21739 1.18065 1.23022 1.02597 0.95776 0.99989 1.22982 0.93358 1.06902 0.99154 1.22282 0.96444 0.96228 1.03275 1.22135 1.01270 0.94080 0.90135 0.92730 0.92867 0.92705 0.92159 0.92048 0.91115 0.91830 0.94818 0.90842 0.94320 0.90372 0.90472 0.90477 0.89002 0.75694 0.85667 0.87393 0.92297 0.90002 0.88648 0.88955 0.90674 0.90151 0.90634 0.94311 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.12 -0.90 5.14 -26.73 -0.14 -1.04 16 4 C 0.05 0.45 4.96 -3.83 -0.02 0.44 16 5 N -0.54 -5.26 4.66 -234.67 -1.09 -6.36 16 6 C 0.06 0.54 5.46 -3.83 -0.02 0.52 16 7 C -0.12 -1.21 5.63 -26.65 -0.15 -1.36 16 8 C 0.15 1.86 2.75 -67.81 -0.19 1.68 16 9 N -1.13 -15.68 5.37 -4.79 -0.03 -15.70 16 10 S 2.61 50.64 5.17 -107.50 -0.56 50.08 16 11 O -0.97 -20.58 18.08 -57.54 -1.04 -21.62 16 12 O -0.94 -22.24 17.10 -57.54 -0.98 -23.23 16 13 C -0.58 -11.04 4.51 37.16 0.17 -10.87 16 14 C 0.00 0.04 0.79 -155.67 -0.12 -0.08 16 15 C -0.51 -14.16 8.79 -34.44 -0.30 -14.47 16 16 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 17 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 18 N -0.88 -26.62 13.96 55.43 0.77 -25.85 16 19 Si 0.87 20.75 24.96 -169.99 -4.24 16.51 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.26 -5.52 5.68 56.52 0.32 -5.20 16 23 C -0.18 -3.63 9.96 -26.70 -0.27 -3.89 16 24 C -0.19 -3.80 7.67 -26.69 -0.20 -4.01 16 25 C -0.14 -1.64 5.65 -26.65 -0.15 -1.79 16 26 C 0.05 0.55 5.29 -3.84 -0.02 0.53 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 34 H 0.03 0.30 8.12 -51.93 -0.42 -0.13 16 35 H 0.07 0.56 7.99 -51.93 -0.41 0.14 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.64 8.02 -51.93 -0.42 0.22 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 1.34 7.49 -51.92 -0.39 0.95 16 41 H 0.41 4.70 8.80 -34.47 -0.30 4.40 16 42 H 0.13 2.36 5.59 -51.92 -0.29 2.07 16 43 H 0.11 1.66 8.09 -51.92 -0.42 1.24 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 46 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 47 H 0.09 1.98 7.33 -51.93 -0.38 1.60 16 48 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 49 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.08 0.91 6.06 -51.92 -0.31 0.59 16 51 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.08 0.79 6.21 -51.93 -0.32 0.46 16 LS Contribution 407.59 15.07 6.14 6.14 Total: -1.00 -33.77 407.59 -11.89 -45.67 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -9.56 Total: 7.86 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: -1.30 Total: -33.50 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.34 Total: -47.91 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -2.02 Total: -44.85 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.24 Total: 16.51 kcal Atomic # 16 Polarization: 50.64 SS G_CDS: -0.56 Total: 50.08 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.77 -11.89 -45.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346432259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.215 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds