Wall clock time and date at job start Wed Apr 1 2020 04:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.46929 * 239.99834 * 2 1 3 5 5 H 1.08000 * 119.99854 * 239.99792 * 4 2 1 6 6 C 1.37870 * 119.99736 * 60.00289 * 4 2 1 7 7 N 1.31510 * 120.00342 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99769 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47322 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47403 * 119.99858 * 8 6 4 11 11 H 1.48502 * 109.47211 * 239.99814 * 8 6 4 12 12 C 1.52998 * 109.47408 * 120.00157 * 2 1 3 13 13 N 1.46507 * 109.46643 * 299.99990 * 12 2 1 14 14 S 1.65610 * 119.99730 * 165.00023 * 13 12 2 15 15 O 1.42094 * 106.40196 * 311.45743 * 14 13 12 16 16 O 1.42099 * 106.40029 * 178.53921 * 14 13 12 17 17 N 1.65598 * 107.21631 * 64.99634 * 14 13 12 18 18 C 1.46938 * 120.66001 * 90.00566 * 17 14 13 19 19 C 1.53165 * 108.74516 * 126.25124 * 18 17 14 20 20 C 1.53088 * 109.35888 * 54.81388 * 19 18 17 21 21 H 1.08997 * 109.54926 * 58.91517 * 20 19 18 22 22 C 1.53084 * 109.23505 * 179.19255 * 20 19 18 23 23 C 1.53009 * 109.38302 * 59.37575 * 22 20 19 24 24 C 1.52990 * 109.52809 * 60.08189 * 23 22 20 25 25 C 1.53019 * 109.51725 * 300.19672 * 24 23 22 26 26 C 1.52972 * 109.40290 * 59.86212 * 25 24 23 27 27 H 1.08995 * 109.46214 * 59.66483 * 26 25 24 28 28 C 1.46919 * 120.66239 * 269.99690 * 17 14 13 29 29 H 1.09003 * 109.46879 * 300.00300 * 1 2 3 30 30 H 1.08998 * 109.47370 * 60.00085 * 1 2 3 31 31 H 1.09000 * 109.47229 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46911 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46920 * 300.00191 * 3 2 1 34 34 H 1.08995 * 109.47314 * 60.00370 * 3 2 1 35 35 H 0.96999 * 120.00043 * 180.02562 * 7 6 4 36 36 H 1.08999 * 109.47571 * 180.02562 * 12 2 1 37 37 H 1.09000 * 109.47272 * 59.99601 * 12 2 1 38 38 H 0.96994 * 120.00264 * 344.99926 * 13 12 2 39 39 H 1.09002 * 109.59656 * 6.46959 * 18 17 14 40 40 H 1.09010 * 109.59081 * 246.03033 * 18 17 14 41 41 H 1.08994 * 109.49042 * 294.84805 * 19 18 17 42 42 H 1.09003 * 109.49044 * 174.77630 * 19 18 17 43 43 H 1.09003 * 109.46823 * 299.41713 * 22 20 19 44 44 H 1.08994 * 109.49651 * 179.35652 * 22 20 19 45 45 H 1.09002 * 109.46193 * 300.06773 * 23 22 20 46 46 H 1.09004 * 109.45683 * 180.09685 * 23 22 20 47 47 H 1.09007 * 109.46051 * 60.21163 * 24 23 22 48 48 H 1.08993 * 109.46050 * 180.18825 * 24 23 22 49 49 H 1.08998 * 109.48361 * 179.83949 * 25 24 23 50 50 H 1.08997 * 109.48025 * 299.88330 * 25 24 23 51 51 H 1.09003 * 109.56907 * 113.72487 * 28 17 14 52 52 H 1.08993 * 109.57300 * 353.35481 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3212 -1.1205 -4.0079 9 1 3.1463 -2.2872 -3.6038 10 1 1.1659 -1.5868 -4.8160 11 1 3.1465 -0.1875 -4.8165 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 16 1.6257 -0.7781 3.9213 15 8 1.0839 -2.0791 3.7397 16 8 1.1156 0.1511 4.8677 17 7 3.2277 -0.9854 4.2860 18 6 3.9686 0.0486 5.0215 19 6 4.6290 -0.5950 6.2444 20 6 5.4890 -1.7782 5.7927 21 1 6.2472 -1.4311 5.0907 22 6 6.1636 -2.4069 7.0147 23 6 5.0920 -2.8799 7.9991 24 6 4.1976 -3.9193 7.3209 25 6 3.5279 -3.2954 6.0946 26 6 4.6026 -2.8247 5.1131 27 1 5.2129 -3.6746 4.8077 28 6 3.9364 -2.2068 3.8807 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 0.7082 1.1608 -3.4844 36 1 3.1301 -0.7209 1.2494 37 1 1.6767 -1.7489 1.2492 38 1 1.1850 0.8645 2.3729 39 1 3.2811 0.8298 5.3461 40 1 4.7347 0.4782 4.3760 41 1 3.8588 -0.9464 6.9309 42 1 5.2572 0.1400 6.7475 43 1 6.8008 -1.6668 7.4988 44 1 6.7682 -3.2571 6.6992 45 1 4.4867 -2.0295 8.3132 46 1 5.5711 -3.3262 8.8706 47 1 4.8022 -4.7715 7.0103 48 1 3.4327 -4.2530 8.0219 49 1 2.8930 -4.0373 5.6102 50 1 2.9214 -2.4446 6.4051 51 1 4.6969 -1.9590 3.1402 52 1 3.2271 -2.9163 3.4548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416525181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:26 Heat of formation + Delta-G solvation = -105.529366 kcal Electronic energy + Delta-G solvation = -30787.070121 eV Core-core repulsion = 26911.828585 eV Total energy + Delta-G solvation = -3875.241536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.25876 -37.10734 -36.74809 -35.85611 -35.53116 -33.17744 -32.48847 -31.08055 -30.51138 -29.40044 -25.69003 -25.53356 -24.98691 -24.48104 -23.31596 -22.43563 -21.35155 -19.52266 -18.90657 -18.37850 -17.40628 -17.21089 -16.00607 -15.76980 -15.71178 -15.27311 -14.85313 -14.70252 -14.22630 -14.11147 -13.89809 -13.73651 -13.35278 -13.11065 -13.07110 -12.89765 -12.51690 -12.26555 -12.18662 -12.01449 -11.84267 -11.75443 -11.66935 -11.47910 -11.38069 -11.23270 -11.13044 -11.06225 -10.92075 -10.83670 -10.64557 -10.40505 -10.35817 -10.17727 -10.16249 -10.01137 -9.64948 -9.34424 -8.97524 -8.78898 -8.74015 -8.37504 -6.01566 -4.12428 0.90507 3.16599 3.26046 3.35004 3.38179 3.85003 4.38085 4.40298 4.44346 4.51450 4.62218 4.90056 4.94543 4.99810 5.03119 5.15899 5.24985 5.27631 5.30907 5.35893 5.45309 5.52042 5.58880 5.66478 5.72664 5.74286 5.81131 5.82137 5.87289 5.96105 5.99233 6.06751 6.08278 6.21002 6.21221 6.31111 6.38561 6.47515 6.51135 6.66361 6.77602 6.92218 7.02047 7.08258 7.36016 7.57098 7.59939 7.70351 8.04015 8.15902 8.39966 8.88198 9.53425 10.99589 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018340 B = 0.003120 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.344242 B = 8971.743714 C = 9517.227584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.063 3.937 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.132 3.868 13 N -1.118 6.118 14 S 2.783 3.217 15 O -0.979 6.979 16 O -0.992 6.992 17 N -1.004 6.004 18 C 0.121 3.879 19 C -0.130 4.130 20 C -0.080 4.080 21 H 0.072 0.928 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.091 4.091 27 H 0.080 0.920 28 C 0.122 3.878 29 H 0.009 0.991 30 H 0.084 0.916 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.007 0.993 35 H 0.259 0.741 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.413 0.587 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.067 0.933 50 H 0.063 0.937 51 H 0.070 0.930 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.798 -4.082 17.996 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.061 3.939 3 C -0.188 4.188 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.007 3.993 13 N -0.882 5.882 14 S 2.791 3.209 15 O -0.962 6.962 16 O -0.977 6.977 17 N -0.843 5.843 18 C -0.005 4.005 19 C -0.169 4.169 20 C -0.098 4.098 21 H 0.091 0.909 22 C -0.150 4.150 23 C -0.160 4.160 24 C -0.155 4.155 25 C -0.157 4.157 26 C -0.111 4.111 27 H 0.098 0.902 28 C -0.004 4.004 29 H 0.028 0.972 30 H 0.102 0.898 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.249 0.751 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.088 0.912 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.038 -4.430 18.397 20.970 hybrid contribution 0.530 0.077 -1.195 1.309 sum 9.568 -4.352 17.202 20.160 Atomic orbital electron populations 1.21816 0.97694 0.99274 1.00172 1.18259 0.92913 0.92594 0.90117 1.21814 0.98341 0.98494 1.00132 1.21050 1.31499 1.12060 0.90011 0.92428 1.24890 0.94881 0.94919 0.98856 1.69822 1.36585 1.22788 1.23087 0.86540 0.78626 0.79694 0.83117 1.19791 1.21080 1.21137 1.21569 0.96986 0.95805 0.84949 1.55860 1.78076 1.30451 1.23836 1.01834 0.72687 0.73449 0.72916 1.93583 1.75907 1.40287 1.86461 1.93562 1.78327 1.64698 1.61066 1.58068 1.30227 1.26223 1.69822 1.21375 0.96563 0.89649 0.92876 1.22031 0.99590 0.97520 0.97734 1.21104 0.96886 0.95068 0.96791 0.90913 1.21567 0.97422 1.00139 0.95878 1.21588 0.97497 0.99095 0.97814 1.21521 0.98746 0.98074 0.97187 1.21635 0.97652 1.00722 0.95677 1.21431 0.96718 0.97756 0.95220 0.90193 1.21484 0.97319 0.85478 0.96112 0.97209 0.89768 0.95422 0.95524 0.89662 0.97364 0.93066 0.93268 0.91868 0.75109 0.89242 0.91455 0.90827 0.91086 0.92133 0.92040 0.91715 0.92441 0.92104 0.92233 0.91461 0.91839 0.91189 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.08 37.16 0.30 -2.78 16 2 C 0.06 1.44 0.51 -155.66 -0.08 1.36 16 3 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 4 C -0.51 -12.95 8.01 -34.44 -0.28 -13.22 16 5 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.54 9.35 55.43 0.52 -23.02 16 8 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.13 2.57 5.08 -4.04 -0.02 2.55 16 13 N -1.12 -19.32 5.39 -10.61 -0.06 -19.37 16 14 S 2.78 45.51 6.18 -107.50 -0.66 44.85 16 15 O -0.98 -18.57 16.20 -57.17 -0.93 -19.49 16 16 O -0.99 -17.95 16.73 -57.17 -0.96 -18.90 16 17 N -1.00 -12.86 2.81 -113.58 -0.32 -13.18 16 18 C 0.12 1.31 6.47 -3.72 -0.02 1.28 16 19 C -0.13 -1.19 4.62 -26.60 -0.12 -1.31 16 20 C -0.08 -0.69 2.48 -90.50 -0.22 -0.91 16 21 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 22 C -0.11 -0.84 5.45 -26.68 -0.15 -0.99 16 23 C -0.12 -0.96 5.64 -26.73 -0.15 -1.11 16 24 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16 25 C -0.12 -1.26 4.82 -26.74 -0.13 -1.39 16 26 C -0.09 -0.89 2.45 -90.55 -0.22 -1.11 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 C 0.12 1.41 5.87 -3.76 -0.02 1.39 16 29 H 0.01 0.19 7.20 -51.93 -0.37 -0.18 16 30 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 34 H 0.01 0.15 6.60 -51.93 -0.34 -0.19 16 35 H 0.26 6.65 8.31 -40.82 -0.34 6.32 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.27 7.75 -51.93 -0.40 0.87 16 38 H 0.41 7.01 6.47 -34.48 -0.22 6.78 16 39 H 0.09 1.01 6.92 -51.93 -0.36 0.65 16 40 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.07 0.74 4.73 -51.93 -0.25 0.49 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.53 6.40 -51.93 -0.33 0.20 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.06 0.76 5.98 -51.93 -0.31 0.44 16 51 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.09 1.20 6.92 -51.93 -0.36 0.84 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -29.31 387.33 -11.70 -41.00 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -9.04 Total: 5.30 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -1.07 Total: -18.38 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.14 Total: -55.57 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -1.88 Total: -38.40 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 45.51 SS G_CDS: -0.66 Total: 44.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.31 -11.70 -41.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416525181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.525 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds