Wall clock time and date at job start Wed Apr 1 2020 03:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47099 * 2 1 4 4 C 1.52996 * 109.47218 * 120.00393 * 2 1 3 5 5 H 1.09003 * 112.79935 * 283.79338 * 4 2 1 6 6 N 1.47169 * 113.49210 * 54.64866 * 4 2 1 7 7 S 1.65598 * 135.99289 * 268.08090 * 6 4 2 8 8 O 1.42107 * 106.40178 * 156.08982 * 7 6 4 9 9 O 1.42094 * 106.40655 * 23.16861 * 7 6 4 10 10 N 1.65602 * 107.21993 * 269.62739 * 7 6 4 11 11 C 1.46508 * 120.00102 * 270.00499 * 10 7 6 12 12 C 1.46501 * 120.00144 * 90.00073 * 10 7 6 13 13 C 1.50697 * 109.46976 * 95.00219 * 12 10 7 14 14 H 1.08000 * 119.99996 * 0.02562 * 13 12 10 15 15 C 1.37871 * 119.99974 * 179.72726 * 13 12 10 16 16 N 1.31516 * 120.00122 * 180.27742 * 15 13 12 17 17 Si 1.86804 * 120.00013 * 0.27280 * 15 13 12 18 18 H 1.48497 * 109.46813 * 90.00170 * 17 15 13 19 19 H 1.48495 * 109.47241 * 210.00185 * 17 15 13 20 20 H 1.48496 * 109.47365 * 330.00194 * 17 15 13 21 21 C 1.47161 * 88.00260 * 87.82168 * 6 4 2 22 22 C 1.52963 * 87.84840 * 26.92133 * 21 6 4 23 23 C 1.52514 * 114.09378 * 220.52276 * 22 21 6 24 24 C 1.53179 * 109.25808 * 283.02416 * 23 22 21 25 25 C 1.52981 * 109.41472 * 302.45119 * 24 23 22 26 26 C 1.52977 * 109.71277 * 61.80903 * 25 24 23 27 27 C 1.52524 * 114.09422 * 88.02454 * 22 21 6 28 28 H 1.09000 * 109.47353 * 299.99445 * 1 2 3 29 29 H 1.08999 * 109.47278 * 60.00194 * 1 2 3 30 30 H 1.09002 * 109.47139 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46947 * 240.00284 * 2 1 3 32 32 H 1.08997 * 109.47016 * 65.09376 * 3 2 1 33 33 H 1.09004 * 109.47466 * 185.08744 * 3 2 1 34 34 H 1.09000 * 109.47728 * 305.08780 * 3 2 1 35 35 H 1.08992 * 109.46805 * 269.99898 * 11 10 7 36 36 H 1.09006 * 109.46948 * 29.99774 * 11 10 7 37 37 H 1.08992 * 109.47001 * 149.99562 * 11 10 7 38 38 H 1.08998 * 109.46875 * 335.00101 * 12 10 7 39 39 H 1.08998 * 109.47201 * 215.00348 * 12 10 7 40 40 H 0.97008 * 119.99849 * 179.97438 * 16 15 13 41 41 H 1.09002 * 113.49075 * 141.66944 * 21 6 4 42 42 H 1.09004 * 113.49056 * 272.11475 * 21 6 4 43 43 H 1.08999 * 109.51041 * 42.95858 * 23 22 21 44 44 H 1.09007 * 109.50827 * 163.09161 * 23 22 21 45 45 H 1.09006 * 109.47966 * 182.46969 * 24 23 22 46 46 H 1.08995 * 109.49223 * 62.44157 * 24 23 22 47 47 H 1.09005 * 109.42680 * 301.73763 * 25 24 23 48 48 H 1.08998 * 109.42870 * 181.88454 * 25 24 23 49 49 H 1.08995 * 109.47890 * 178.21238 * 26 25 24 50 50 H 1.09000 * 109.48958 * 58.17781 * 26 25 24 51 51 H 1.09006 * 109.50285 * 196.91119 * 27 22 21 52 52 H 1.09001 * 109.50619 * 317.03387 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.9549 -0.1153 2.1512 6 7 1.4993 -2.0814 1.4031 7 16 0.1976 -2.7667 2.1636 8 8 -0.0658 -3.9878 1.4862 9 8 -0.7691 -1.7359 2.3117 10 7 0.6830 -3.1758 3.6931 11 6 1.2548 -4.4999 3.9506 12 6 0.5407 -2.2137 4.7887 13 6 -0.7525 -2.4710 5.5184 14 1 -1.4031 -3.2714 5.1983 15 6 -1.1021 -1.6886 6.5984 16 7 -2.2281 -1.9166 7.2386 17 14 0.0236 -0.3046 7.1525 18 1 -0.3443 0.9468 6.4427 19 1 -0.1219 -0.1043 8.6167 20 1 1.4318 -0.6561 6.8386 21 6 2.6190 -2.5643 0.5792 22 6 3.4222 -1.3568 1.0658 23 6 4.2703 -0.6963 -0.0161 24 6 5.5216 -1.5440 -0.2650 25 6 6.2990 -1.6995 1.0434 26 6 5.4346 -2.4285 2.0737 27 6 4.1817 -1.5974 2.3665 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.7530 1.9292 0.9321 33 1 3.1261 1.4439 -0.0911 34 1 1.6041 1.9820 -0.8409 35 1 0.4576 -5.1948 4.2144 36 1 1.7654 -4.8555 3.0556 37 1 1.9667 -4.4344 4.7733 38 1 0.5348 -1.2014 4.3848 39 1 1.3762 -2.3242 5.4801 40 1 -2.4739 -1.3663 7.9987 41 1 3.0243 -3.5192 0.9138 42 1 2.4107 -2.5462 -0.4906 43 1 3.6921 -0.6218 -0.9371 44 1 4.5653 0.3009 0.3109 45 1 6.1520 -1.0527 -1.0062 46 1 5.2277 -2.5273 -0.6322 47 1 6.5658 -0.7142 1.4259 48 1 7.2066 -2.2744 0.8597 49 1 6.0031 -2.5653 2.9936 50 1 5.1414 -3.4014 1.6794 51 1 4.4726 -0.6406 2.8002 52 1 3.5430 -2.1359 3.0666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416551531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:55 Heat of formation + Delta-G solvation = -57.713354 kcal Electronic energy + Delta-G solvation = -31657.691903 eV Core-core repulsion = 27784.523825 eV Total energy + Delta-G solvation = -3873.168078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.25183 -36.74852 -36.54797 -35.61482 -35.18169 -34.20676 -32.38028 -31.01623 -30.05545 -28.39521 -26.93117 -25.82770 -25.42459 -25.05318 -23.00723 -21.90530 -21.48121 -20.17656 -18.67959 -17.82289 -17.38262 -16.99267 -16.64536 -15.84723 -15.68094 -15.22609 -14.67817 -14.37026 -14.25324 -14.21145 -14.08632 -13.59835 -13.36464 -13.15075 -13.02399 -12.70286 -12.47756 -12.41541 -12.38175 -12.23819 -12.06349 -11.99380 -11.75906 -11.61437 -11.39015 -11.35729 -11.28820 -11.26269 -11.16662 -10.99488 -10.87005 -10.77895 -10.64383 -10.47128 -10.32194 -10.20003 -10.06260 -9.83344 -9.55614 -8.85561 -8.59274 -8.10632 -6.07979 -4.07085 1.06819 3.25882 3.30830 3.32530 3.44595 4.03887 4.06273 4.37752 4.45271 4.56907 4.59665 4.80311 4.87521 4.90212 5.01661 5.12043 5.15309 5.18342 5.22695 5.27212 5.34879 5.43024 5.46600 5.50254 5.54163 5.62062 5.69262 5.73904 5.80711 5.84652 5.88368 5.91082 5.95013 5.97170 5.98183 6.01097 6.05766 6.09239 6.14546 6.22549 6.28118 6.29114 6.39027 6.42962 6.54443 6.70871 6.75611 7.07401 7.39385 7.58279 8.49432 8.96953 9.50950 11.05727 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011813 B = 0.004554 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.792068 B = 6146.758551 C = 6409.255468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C -0.148 4.148 4 C 0.168 3.832 5 H 0.086 0.914 6 N -1.046 6.046 7 S 2.798 3.202 8 O -0.991 6.991 9 O -0.952 6.952 10 N -0.990 5.990 11 C 0.109 3.891 12 C 0.231 3.769 13 C -0.530 4.530 14 H 0.077 0.923 15 C 0.074 3.926 16 N -0.895 5.895 17 Si 0.871 3.129 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.265 1.265 21 C 0.138 3.862 22 C -0.086 4.086 23 C -0.105 4.105 24 C -0.118 4.118 25 C -0.118 4.118 26 C -0.117 4.117 27 C -0.095 4.095 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.027 0.973 39 H 0.031 0.969 40 H 0.265 0.735 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.067 0.933 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.799 3.191 -15.573 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.205 4.205 4 C 0.062 3.938 5 H 0.104 0.896 6 N -0.883 5.883 7 S 2.809 3.191 8 O -0.975 6.975 9 O -0.936 6.936 10 N -0.831 5.831 11 C -0.037 4.037 12 C 0.107 3.893 13 C -0.569 4.569 14 H 0.095 0.905 15 C -0.129 4.129 16 N -0.533 5.533 17 Si 0.698 3.302 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.190 1.190 21 C 0.012 3.988 22 C -0.088 4.088 23 C -0.143 4.143 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.155 4.155 27 C -0.132 4.132 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.076 0.924 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.086 0.914 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.587 2.970 -15.630 23.715 hybrid contribution 0.566 0.654 0.714 1.122 sum 18.153 3.624 -14.916 23.772 Atomic orbital electron populations 1.21809 0.94090 1.02047 1.02334 1.21362 0.96783 0.96271 0.97519 1.21899 1.01192 0.95175 1.02264 1.22035 0.89806 0.83909 0.98097 0.89626 1.60933 1.44434 1.18027 1.64901 1.01475 0.72361 0.72928 0.72341 1.93537 1.83389 1.46203 1.74415 1.93632 1.55518 1.58507 1.85963 1.57498 1.78631 1.22025 1.24967 1.21217 0.98211 0.83790 1.00525 1.19413 0.98109 0.86639 0.85118 1.21367 1.04201 1.18069 1.13302 0.90526 1.24862 0.95027 0.96980 0.96042 1.69901 1.22527 1.39878 1.21038 0.86933 0.81628 0.83381 0.78266 1.19806 1.20945 1.18966 1.22398 0.83801 0.97543 0.95096 1.22012 0.93393 0.96715 0.96709 1.21573 0.95851 0.98939 0.97966 1.21547 0.96501 1.00321 0.97190 1.21513 0.97947 1.00585 0.95553 1.21523 0.96064 0.98974 0.98892 1.21221 0.96100 1.00707 0.95214 0.91315 0.92787 0.93354 0.90481 0.92314 0.92055 0.92462 0.92791 0.92963 0.91502 0.95515 0.95066 0.92538 0.91020 0.90365 0.91046 0.91200 0.92204 0.91941 0.92110 0.92410 0.91933 0.91920 0.91399 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.21 37.15 0.31 -1.72 16 2 C -0.10 -1.11 2.07 -90.63 -0.19 -1.29 16 3 C -0.15 -1.33 8.98 37.15 0.33 -1.00 16 4 C 0.17 2.12 3.36 -71.94 -0.24 1.88 16 5 H 0.09 1.16 8.10 -51.93 -0.42 0.74 16 6 N -1.05 -15.75 3.22 -117.59 -0.38 -16.13 16 7 S 2.80 57.02 6.13 -107.50 -0.66 56.36 16 8 O -0.99 -21.76 17.21 -57.17 -0.98 -22.74 16 9 O -0.95 -22.72 15.45 -57.17 -0.88 -23.60 16 10 N -0.99 -20.53 3.23 -123.05 -0.40 -20.93 16 11 C 0.11 1.89 10.33 59.85 0.62 2.51 16 12 C 0.23 5.47 4.19 -5.19 -0.02 5.45 16 13 C -0.53 -15.32 9.94 -34.44 -0.34 -15.66 16 14 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 15 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 17 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 21 C 0.14 1.57 7.27 -8.20 -0.06 1.51 16 22 C -0.09 -0.85 0.81 -154.90 -0.13 -0.98 16 23 C -0.11 -0.79 3.61 -26.89 -0.10 -0.89 16 24 C -0.12 -0.80 5.87 -26.65 -0.16 -0.96 16 25 C -0.12 -0.84 5.86 -26.75 -0.16 -1.00 16 26 C -0.12 -0.98 5.87 -26.65 -0.16 -1.13 16 27 C -0.09 -0.96 5.13 -26.89 -0.14 -1.10 16 28 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.77 6.46 -51.93 -0.34 0.43 16 31 H 0.08 0.75 5.57 -51.93 -0.29 0.46 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.46 5.67 -51.93 -0.29 0.16 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 37 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 38 H 0.03 0.64 7.04 -51.93 -0.37 0.27 16 39 H 0.03 0.70 7.01 -51.93 -0.36 0.34 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.07 0.77 7.56 -51.93 -0.39 0.38 16 42 H 0.08 0.79 7.35 -51.93 -0.38 0.41 16 43 H 0.07 0.51 6.00 -51.93 -0.31 0.19 16 44 H 0.07 0.50 6.84 -51.93 -0.36 0.15 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.06 0.53 7.58 -51.93 -0.39 0.13 16 51 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.07 0.88 7.94 -51.93 -0.41 0.47 16 LS Contribution 399.07 15.07 6.01 6.01 Total: -1.00 -34.61 399.07 -11.08 -45.69 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -9.37 Total: -1.79 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -0.52 Total: -12.33 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: 0.00 Total: -64.06 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -1.87 Total: -46.34 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Atomic # 16 Polarization: 57.02 SS G_CDS: -0.66 Total: 56.36 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.61 -11.08 -45.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416551531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.028 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds