Wall clock time and date at job start Wed Apr 1 2020 03:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47147 * 2 1 4 4 C 1.50693 * 109.47504 * 240.00035 * 2 1 3 5 5 H 1.08001 * 120.00171 * 240.00283 * 4 2 1 6 6 C 1.37875 * 120.00443 * 59.99660 * 4 2 1 7 7 N 1.31514 * 119.99480 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00574 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.46918 * 59.99966 * 8 6 4 10 10 H 1.48497 * 109.47531 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47039 * 300.00506 * 8 6 4 12 12 C 1.52999 * 109.46946 * 119.99657 * 2 1 3 13 13 N 1.46505 * 109.47192 * 300.00266 * 12 2 1 14 14 C 1.34777 * 119.99724 * 180.02562 * 13 12 2 15 15 O 1.21343 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.49452 * 119.99621 * 180.02562 * 14 13 12 17 17 O 1.21343 * 119.99953 * 359.97438 * 16 14 13 18 18 N 1.34777 * 119.99622 * 179.97438 * 16 14 13 19 19 C 1.46499 * 119.99665 * 179.72283 * 18 16 14 20 20 C 1.53004 * 109.47198 * 180.27868 * 19 18 16 21 21 H 1.08998 * 110.26599 * 54.29987 * 20 19 18 22 22 C 1.54345 * 110.30313 * 176.37312 * 20 19 18 23 23 C 1.54493 * 102.32425 * 145.20553 * 22 20 19 24 24 C 1.51374 * 105.21107 * 333.76604 * 23 22 20 25 25 C 1.38496 * 130.38440 * 197.09949 * 24 23 22 26 26 C 1.38107 * 120.21575 * 180.02562 * 25 24 23 27 27 C 1.38252 * 119.92800 * 359.97438 * 26 25 24 28 28 C 1.38097 * 119.94103 * 359.97438 * 27 26 25 29 29 C 1.38208 * 109.76124 * 17.13034 * 24 23 22 30 30 H 1.08990 * 109.46922 * 300.00299 * 1 2 3 31 31 H 1.08994 * 109.46561 * 60.00326 * 1 2 3 32 32 H 1.08998 * 109.46368 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47357 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46873 * 299.99978 * 3 2 1 35 35 H 1.09003 * 109.47092 * 59.99577 * 3 2 1 36 36 H 0.97009 * 119.99998 * 179.97438 * 7 6 4 37 37 H 1.08995 * 109.47276 * 180.02562 * 12 2 1 38 38 H 1.09001 * 109.47054 * 60.00176 * 12 2 1 39 39 H 0.97000 * 119.99792 * 359.97438 * 13 12 2 40 40 H 0.97001 * 120.00485 * 0.02562 * 18 16 14 41 41 H 1.09009 * 109.47454 * 300.27637 * 19 18 16 42 42 H 1.08998 * 109.47492 * 60.27932 * 19 18 16 43 43 H 1.08998 * 110.82525 * 263.49092 * 22 20 19 44 44 H 1.09000 * 110.82519 * 27.04480 * 22 20 19 45 45 H 1.09001 * 110.34264 * 214.80336 * 23 22 20 46 46 H 1.08997 * 110.22618 * 92.67815 * 23 22 20 47 47 H 1.08004 * 119.89704 * 0.04055 * 25 24 23 48 48 H 1.07991 * 120.03635 * 180.02562 * 26 25 24 49 49 H 1.08005 * 120.02982 * 180.02562 * 27 26 25 50 50 H 1.07999 * 119.89202 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3216 -1.1203 -4.0079 9 1 1.8261 -2.5203 -4.0076 10 1 1.8272 -0.4200 -5.2204 11 1 3.8066 -1.1209 -4.0080 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8776 -0.4907 3.6696 15 8 2.5753 -1.4772 3.7810 16 6 1.3789 0.2136 4.8898 17 8 0.6809 1.1998 4.7783 18 7 1.7045 -0.2469 6.1139 19 6 1.2206 0.4469 7.3100 20 6 1.7353 -0.2709 8.5593 21 1 2.8203 -0.3674 8.5193 22 6 1.3124 0.4961 9.8302 23 6 1.0649 -0.6478 10.8386 24 6 0.7056 -1.8514 9.9937 25 6 0.0906 -3.0420 10.3435 26 6 -0.1386 -4.0127 9.3883 27 6 0.2463 -3.7958 8.0783 28 6 0.8586 -2.6088 7.7273 29 6 1.0910 -1.6349 8.6843 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 0.7096 1.1617 -3.4845 37 1 3.1300 -0.7208 1.2496 38 1 1.6767 -1.7488 1.2493 39 1 0.9942 0.7583 2.3564 40 1 2.2628 -1.0351 6.2030 41 1 1.5840 1.4747 7.3059 42 1 0.1307 0.4470 7.3141 43 1 2.1141 1.1501 10.1730 44 1 0.3975 1.0620 9.6547 45 1 0.2404 -0.3939 11.5049 46 1 1.9695 -0.8457 11.4135 47 1 -0.2109 -3.2119 11.3666 48 1 -0.6188 -4.9399 9.6642 49 1 0.0674 -4.5537 7.3298 50 1 1.1586 -2.4401 6.7037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422313453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:06 Heat of formation + Delta-G solvation = -56.150579 kcal Electronic energy + Delta-G solvation = -29641.720377 eV Core-core repulsion = 25633.176115 eV Total energy + Delta-G solvation = -4008.544262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.86391 -40.13721 -38.34984 -36.58075 -36.44686 -34.83218 -33.29426 -31.61215 -30.88998 -29.70694 -28.85004 -26.45856 -25.72313 -25.37926 -24.68624 -23.00408 -22.70395 -21.38670 -20.81506 -19.92469 -18.96695 -18.19253 -17.05877 -16.62752 -15.99493 -15.85418 -15.65672 -15.51382 -15.41132 -14.92576 -14.78513 -14.47678 -14.31102 -13.62733 -13.50731 -13.46531 -13.02859 -12.95241 -12.93101 -12.71700 -12.36815 -12.22383 -12.04564 -11.70636 -11.42672 -11.41832 -11.39554 -11.29413 -11.17246 -10.97654 -10.86392 -10.74267 -10.39862 -10.20325 -9.65261 -9.54852 -9.31456 -9.22586 -9.07646 -8.81818 -8.81067 -8.60401 -8.36975 -6.02556 -4.13436 1.07006 1.12789 1.65686 2.56610 3.29631 3.34353 3.37339 3.47383 3.47705 3.87875 3.99513 4.15260 4.38642 4.39509 4.62214 4.75125 4.78849 4.81660 4.90397 4.98807 5.05980 5.22221 5.23919 5.27689 5.40376 5.43979 5.51314 5.55056 5.73238 5.80269 5.87844 6.11056 6.12538 6.18958 6.23285 6.28909 6.34615 6.46817 6.62743 6.73148 6.82255 6.85107 6.93900 7.00319 7.08680 7.33134 7.55050 7.66349 7.71031 7.96651 7.99997 8.12541 8.32151 8.40990 8.86472 9.52334 10.98788 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.002023 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.859030 B =13835.859332 C =14573.570244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.128 3.872 13 N -0.680 5.680 14 C 0.495 3.505 15 O -0.536 6.536 16 C 0.507 3.493 17 O -0.519 6.519 18 N -0.707 5.707 19 C 0.127 3.873 20 C -0.063 4.063 21 H 0.096 0.904 22 C -0.111 4.111 23 C -0.081 4.081 24 C -0.097 4.097 25 C -0.110 4.110 26 C -0.118 4.118 27 C -0.118 4.118 28 C -0.102 4.102 29 C -0.097 4.097 30 H 0.008 0.992 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.087 0.913 35 H 0.008 0.992 36 H 0.261 0.739 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.411 0.589 40 H 0.412 0.588 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.118 0.882 48 H 0.123 0.877 49 H 0.125 0.875 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.861 -2.846 26.973 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 C -0.191 4.191 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.006 3.994 13 N -0.331 5.331 14 C 0.274 3.726 15 O -0.415 6.415 16 C 0.288 3.712 17 O -0.394 6.394 18 N -0.362 5.362 19 C 0.003 3.997 20 C -0.081 4.081 21 H 0.114 0.886 22 C -0.149 4.149 23 C -0.118 4.118 24 C -0.097 4.097 25 C -0.128 4.128 26 C -0.136 4.136 27 C -0.136 4.136 28 C -0.120 4.120 29 C -0.097 4.097 30 H 0.027 0.973 31 H 0.106 0.894 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.106 0.894 35 H 0.027 0.973 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.248 0.752 40 H 0.249 0.751 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.136 0.864 48 H 0.141 0.859 49 H 0.143 0.857 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.962 -2.697 26.781 26.933 hybrid contribution 0.293 -0.610 -0.890 1.118 sum -0.669 -3.307 25.890 26.109 Atomic orbital electron populations 1.21856 0.97591 0.99282 1.00401 1.18381 0.92979 0.92870 0.90262 1.21857 0.98610 0.98255 1.00398 1.20901 1.31742 1.12187 0.89773 0.92416 1.24886 0.94834 0.94925 0.98875 1.69800 1.36434 1.22618 1.23403 0.86612 0.79202 0.79758 0.82142 1.20278 1.21327 1.20283 1.21946 0.98540 0.96034 0.82860 1.46226 1.50357 1.31370 1.05153 1.19971 0.82402 0.85246 0.84955 1.90720 1.37981 1.25982 1.86785 1.20494 0.81067 0.84708 0.84980 1.90754 1.36426 1.25399 1.86846 1.45895 1.53179 1.32246 1.04883 1.21503 0.99963 0.96114 0.82096 1.21004 1.00694 0.91551 0.94872 0.88630 1.22326 1.02441 0.97046 0.93098 1.21064 1.01836 0.91650 0.97261 1.20556 0.98608 0.95493 0.95005 1.20606 0.99769 0.92958 0.99497 1.21070 1.00257 0.99042 0.93260 1.21112 0.98732 0.97197 0.96514 1.20828 0.98976 0.93058 0.99170 1.20469 0.99552 0.95543 0.94092 0.97266 0.89432 0.95350 0.95351 0.89430 0.97273 0.92880 0.91996 0.91996 0.75177 0.75099 0.90466 0.90678 0.89887 0.90220 0.90511 0.90092 0.86356 0.85904 0.85674 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 4 C -0.51 -13.15 8.01 -34.44 -0.28 -13.43 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -23.59 9.35 55.43 0.52 -23.07 16 8 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.13 2.68 4.50 -4.04 -0.02 2.66 16 13 N -0.68 -12.64 4.95 -60.73 -0.30 -12.94 16 14 C 0.49 8.66 7.89 -11.58 -0.09 8.57 16 15 O -0.54 -10.16 16.48 5.50 0.09 -10.07 16 16 C 0.51 7.75 7.89 -11.58 -0.09 7.66 16 17 O -0.52 -8.98 16.48 5.50 0.09 -8.89 16 18 N -0.71 -8.31 4.53 -60.73 -0.27 -8.59 16 19 C 0.13 1.20 4.93 -4.04 -0.02 1.18 16 20 C -0.06 -0.47 2.93 -90.74 -0.27 -0.74 16 21 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 22 C -0.11 -0.63 6.60 -25.24 -0.17 -0.80 16 23 C -0.08 -0.48 6.77 -26.77 -0.18 -0.66 16 24 C -0.10 -0.81 6.14 -104.21 -0.64 -1.45 16 25 C -0.11 -0.90 10.04 -39.53 -0.40 -1.30 16 26 C -0.12 -0.99 10.05 -39.62 -0.40 -1.39 16 27 C -0.12 -1.12 10.05 -39.63 -0.40 -1.51 16 28 C -0.10 -1.05 9.35 -39.54 -0.37 -1.41 16 29 C -0.10 -0.89 5.57 -104.21 -0.58 -1.47 16 30 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 31 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 35 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 36 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.41 7.55 5.63 -40.82 -0.23 7.32 16 40 H 0.41 4.53 6.23 -40.82 -0.25 4.27 16 41 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.45 7.91 -51.93 -0.41 0.04 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 48 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 49 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 50 H 0.12 1.31 5.86 -52.49 -0.31 1.00 16 LS Contribution 398.32 15.07 6.00 6.00 Total: -1.00 -29.13 398.32 -9.94 -39.07 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -7.58 Total: 9.65 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -3.46 Total: -6.75 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -0.06 Total: -44.60 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.18 Total: -18.96 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.13 -9.94 -39.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422313453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.082 kcal (2) G-P(sol) polarization free energy of solvation -29.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds