Wall clock time and date at job start Wed Apr 1 2020 03:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47096 * 2 1 4 4 C 1.50700 * 109.46925 * 240.00352 * 2 1 3 5 5 H 1.08008 * 120.00023 * 240.00068 * 4 2 1 6 6 C 1.37873 * 120.00298 * 60.00037 * 4 2 1 7 7 N 1.31511 * 119.99816 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00212 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46766 * 60.00235 * 8 6 4 10 10 H 1.48503 * 109.47072 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47467 * 300.00230 * 8 6 4 12 12 C 1.52997 * 109.46829 * 120.00423 * 2 1 3 13 13 N 1.46496 * 109.47244 * 299.99449 * 12 2 1 14 14 C 1.34774 * 120.00044 * 180.02562 * 13 12 2 15 15 O 1.21353 * 120.00344 * 0.02562 * 14 13 12 16 16 C 1.49455 * 120.00178 * 180.02562 * 14 13 12 17 17 O 1.21354 * 119.99845 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00178 * 179.97438 * 16 14 13 19 19 C 1.47025 * 125.64806 * 0.03869 * 18 16 14 20 20 C 1.54369 * 107.28571 * 181.05783 * 19 18 16 21 21 C 1.55148 * 102.92386 * 22.13956 * 20 19 18 22 22 H 1.09006 * 111.00243 * 82.63759 * 21 20 19 23 23 C 1.50703 * 111.00988 * 206.45128 * 21 20 19 24 24 C 1.38234 * 120.00257 * 236.82639 * 23 21 20 25 25 C 1.38238 * 119.99675 * 180.27927 * 24 23 21 26 26 C 1.38228 * 120.00120 * 359.47825 * 25 24 23 27 27 C 1.38234 * 120.00000 * 0.52176 * 26 25 24 28 28 C 1.38234 * 119.99503 * 56.84239 * 23 21 20 29 29 C 1.47421 * 125.64669 * 180.02562 * 18 16 14 30 30 H 1.08996 * 109.47372 * 299.99761 * 1 2 3 31 31 H 1.09006 * 109.47146 * 59.99416 * 1 2 3 32 32 H 1.09001 * 109.47255 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46833 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47427 * 299.99984 * 3 2 1 35 35 H 1.09003 * 109.46814 * 60.00777 * 3 2 1 36 36 H 0.97007 * 120.00224 * 179.97438 * 7 6 4 37 37 H 1.09011 * 109.46843 * 179.97438 * 12 2 1 38 38 H 1.09001 * 109.47334 * 59.99887 * 12 2 1 39 39 H 0.97002 * 119.99848 * 0.02562 * 13 12 2 40 40 H 1.08996 * 109.88490 * 300.44102 * 19 18 16 41 41 H 1.09003 * 109.87911 * 61.61249 * 19 18 16 42 42 H 1.09008 * 110.70370 * 263.79361 * 20 19 18 43 43 H 1.09001 * 110.75590 * 140.51380 * 20 19 18 44 44 H 1.08002 * 119.99744 * 359.97438 * 24 23 21 45 45 H 1.08004 * 119.99577 * 179.72816 * 25 24 23 46 46 H 1.07999 * 119.99932 * 180.24104 * 26 25 24 47 47 H 1.08001 * 120.00310 * 179.72161 * 27 26 25 48 48 H 1.07997 * 120.00460 * 0.02562 * 28 23 21 49 49 H 1.09002 * 110.36893 * 37.06766 * 29 18 16 50 50 H 1.09000 * 110.36668 * 274.74110 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 1.8278 -2.5196 -4.0082 10 1 1.8278 -0.4189 -5.2205 11 1 3.8074 -1.1189 -4.0079 12 6 2.0399 -0.7213 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8776 -0.4910 3.6694 15 8 2.5760 -1.4772 3.7808 16 6 1.3791 0.2131 4.8898 17 8 0.6803 1.1991 4.7785 18 7 1.7046 -0.2474 6.1138 19 6 2.5391 -1.4255 6.3921 20 6 2.6154 -1.5816 7.9260 21 6 1.3577 -0.8163 8.4156 22 1 0.4696 -1.4455 8.3558 23 6 1.5536 -0.2952 9.8161 24 6 0.6671 -0.6496 10.8158 25 6 0.8435 -0.1668 12.0990 26 6 1.9125 0.6616 12.3849 27 6 2.7989 1.0161 11.3852 28 6 2.6195 0.5376 10.1008 29 6 1.2832 0.3468 7.3955 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9562 0.8901 36 1 0.7095 1.1620 -3.4844 37 1 3.1300 -0.7217 1.2490 38 1 1.6765 -1.7490 1.2491 39 1 0.9937 0.7578 2.3564 40 1 2.0855 -2.3135 5.9519 41 1 3.5388 -1.2763 5.9842 42 1 3.5233 -1.1208 8.3156 43 1 2.5625 -2.6325 8.2104 44 1 -0.1661 -1.2997 10.5931 45 1 0.1484 -0.4402 12.8791 46 1 2.0525 1.0357 13.3884 47 1 3.6316 1.6669 11.6076 48 1 3.3118 0.8151 9.3196 49 1 0.2625 0.7224 7.3221 50 1 1.9634 1.1482 7.6839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422487729.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:52 Heat of formation + Delta-G solvation = -46.185622 kcal Electronic energy + Delta-G solvation = -29546.690214 eV Core-core repulsion = 25538.578064 eV Total energy + Delta-G solvation = -4008.112149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.79594 -39.80268 -38.49666 -37.40830 -36.43425 -33.57970 -32.99022 -31.28350 -30.88617 -30.35017 -28.79299 -26.41416 -25.71875 -25.35883 -24.53424 -23.21634 -22.55740 -22.10650 -20.47520 -19.71077 -18.84068 -17.73243 -17.49563 -16.73522 -16.34043 -15.83649 -15.63815 -15.32338 -15.04209 -14.83920 -14.72130 -14.09332 -13.92517 -13.76521 -13.66484 -13.50478 -13.27537 -13.07359 -12.90995 -12.80873 -12.54457 -12.23038 -12.08301 -11.71335 -11.55436 -11.39376 -11.38840 -11.19835 -11.08321 -10.92302 -10.85733 -10.73996 -10.39390 -10.20048 -9.64867 -9.51623 -9.28708 -9.22684 -9.02520 -8.87490 -8.80644 -8.56914 -8.36483 -6.02275 -4.13201 0.95439 1.03852 1.66963 2.43857 3.29659 3.34404 3.36883 3.37298 3.47108 3.72751 4.15847 4.30624 4.36673 4.42660 4.59689 4.63795 4.76341 4.80301 4.85159 4.97999 5.03033 5.13828 5.24164 5.25591 5.39018 5.53569 5.61889 5.64422 5.69393 5.72193 5.85071 6.03209 6.11147 6.12000 6.15984 6.23556 6.25947 6.47271 6.62827 6.63807 6.83634 6.85637 6.94675 7.00653 7.13201 7.33144 7.55374 7.59459 7.69149 7.97236 8.00244 8.13091 8.33229 8.41999 8.86653 9.52543 10.99056 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.035348 B = 0.001813 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.937816 B =15440.886768 C =15702.084442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.055 3.945 3 C -0.133 4.133 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.129 3.871 13 N -0.681 5.681 14 C 0.498 3.502 15 O -0.531 6.531 16 C 0.521 3.479 17 O -0.521 6.521 18 N -0.597 5.597 19 C 0.108 3.892 20 C -0.126 4.126 21 C -0.064 4.064 22 H 0.095 0.905 23 C -0.070 4.070 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.117 4.117 28 C -0.114 4.114 29 C 0.114 3.886 30 H 0.008 0.992 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.087 0.913 35 H 0.008 0.992 36 H 0.261 0.739 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.410 0.590 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.084 0.916 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.236 -1.595 27.926 27.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 C -0.191 4.191 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.008 3.992 13 N -0.332 5.332 14 C 0.278 3.722 15 O -0.409 6.409 16 C 0.305 3.695 17 O -0.397 6.397 18 N -0.332 5.332 19 C -0.014 4.014 20 C -0.164 4.164 21 C -0.083 4.083 22 H 0.114 0.886 23 C -0.070 4.070 24 C -0.131 4.131 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.135 4.135 28 C -0.132 4.132 29 C -0.008 4.008 30 H 0.027 0.973 31 H 0.106 0.894 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.106 0.894 35 H 0.027 0.973 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.248 0.752 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.102 0.898 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.253 -1.614 27.645 27.720 hybrid contribution 0.083 -0.084 -0.819 0.827 sum 1.336 -1.698 26.826 26.913 Atomic orbital electron populations 1.21851 0.97578 0.99268 1.00386 1.18385 0.92997 0.92885 0.90278 1.21853 0.98594 0.98249 1.00386 1.20900 1.31744 1.12180 0.89764 0.92420 1.24884 0.94837 0.94922 0.98865 1.69798 1.36437 1.22600 1.23401 0.86614 0.79198 0.79750 0.82161 1.20287 1.21323 1.20294 1.21930 0.98502 0.95993 0.82810 1.46213 1.50516 1.31451 1.05065 1.19836 0.82429 0.85226 0.84746 1.90707 1.37736 1.25872 1.86562 1.20236 0.81057 0.84571 0.83665 1.90761 1.37076 1.25711 1.86143 1.48220 1.50556 1.29767 1.04659 1.22206 0.96123 0.88301 0.94780 1.22884 0.97580 1.01616 0.94338 1.21344 0.99788 0.96617 0.90585 0.88626 1.19565 0.95524 0.97745 0.94212 1.21080 0.99026 1.00138 0.92837 1.21151 0.98002 0.97869 0.96662 1.21177 0.95212 0.98472 0.99310 1.21160 0.99417 0.99886 0.93076 1.21054 0.97690 0.97514 0.96895 1.22381 1.01710 0.95354 0.81404 0.97279 0.89447 0.95360 0.95366 0.89435 0.97287 0.92881 0.92034 0.92037 0.75220 0.90014 0.90081 0.90156 0.89469 0.85936 0.86047 0.86171 0.86005 0.85871 0.89783 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 4 C -0.51 -13.15 8.01 -34.44 -0.28 -13.43 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -23.60 9.35 55.43 0.52 -23.08 16 8 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.13 2.71 4.50 -4.05 -0.02 2.69 16 13 N -0.68 -12.84 4.95 -60.73 -0.30 -13.14 16 14 C 0.50 8.90 7.86 -11.58 -0.09 8.81 16 15 O -0.53 -9.99 14.12 5.49 0.08 -9.91 16 16 C 0.52 8.46 7.91 -11.58 -0.09 8.37 16 17 O -0.52 -9.50 16.73 5.49 0.09 -9.41 16 18 N -0.60 -7.66 3.33 -171.01 -0.57 -8.23 16 19 C 0.11 1.17 5.49 -3.04 -0.02 1.15 16 20 C -0.13 -0.95 6.37 -24.88 -0.16 -1.11 16 21 C -0.06 -0.50 3.26 -89.63 -0.29 -0.79 16 22 H 0.10 0.70 7.96 -51.93 -0.41 0.29 16 23 C -0.07 -0.53 5.00 -104.62 -0.52 -1.05 16 24 C -0.11 -0.80 9.69 -39.58 -0.38 -1.18 16 25 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 26 C -0.12 -0.81 10.05 -39.59 -0.40 -1.20 16 27 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 28 C -0.11 -0.84 8.28 -39.58 -0.33 -1.17 16 29 C 0.11 1.16 6.32 -2.54 -0.02 1.14 16 30 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 31 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 35 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 36 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.41 7.68 5.64 -40.82 -0.23 7.45 16 40 H 0.08 0.95 7.58 -51.93 -0.39 0.56 16 41 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 42 H 0.08 0.55 6.98 -51.92 -0.36 0.19 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.12 0.69 7.98 -52.49 -0.42 0.28 16 45 H 0.12 0.57 8.06 -52.48 -0.42 0.15 16 46 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 47 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 48 H 0.12 0.83 7.02 -52.49 -0.37 0.46 16 49 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 50 H 0.07 0.73 6.85 -51.93 -0.36 0.37 16 LS Contribution 396.52 15.07 5.98 5.98 Total: -1.00 -28.98 396.52 -9.81 -38.79 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.63 Total: 6.22 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -2.96 Total: -2.81 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.35 Total: -44.45 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.17 Total: -19.31 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.98 -9.81 -38.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422487729.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.392 kcal (2) G-P(sol) polarization free energy of solvation -28.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds