Wall clock time and date at job start Wed Apr 1 2020 04:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.31006 * 120.00082 * 2 1 4 4 C 1.50692 * 119.99913 * 0.02562 * 3 2 1 5 5 O 1.42904 * 109.46885 * 134.99780 * 4 3 2 6 6 C 1.35899 * 116.99933 * 179.97438 * 5 4 3 7 7 C 1.38753 * 120.05848 * 0.02562 * 6 5 4 8 8 C 1.38123 * 119.94674 * 180.02562 * 7 6 5 9 9 C 1.38284 * 120.05228 * 0.02562 * 8 7 6 10 10 C 1.38242 * 120.11706 * 0.02562 * 9 8 7 11 11 C 1.50693 * 119.97393 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47115 * 90.00074 * 11 10 9 13 13 O 1.21279 * 120.00143 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99763 * 179.97438 * 12 11 10 15 15 C 1.46965 * 120.59323 * 179.97438 * 14 12 11 16 16 C 1.53374 * 108.63702 * 235.25034 * 15 14 12 17 17 N 1.46968 * 108.63080 * 310.57409 * 16 15 14 18 18 C 1.36934 * 120.58904 * 235.19759 * 17 16 15 19 19 H 1.08009 * 119.99376 * 151.84519 * 18 17 16 20 20 C 1.38804 * 120.00824 * 331.57781 * 18 17 16 21 21 N 1.31627 * 119.99593 * 342.82852 * 20 18 17 22 22 Si 1.86794 * 120.00637 * 162.82757 * 20 18 17 23 23 H 1.48504 * 109.47167 * 59.99793 * 22 20 18 24 24 H 1.48497 * 109.47420 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47203 * 300.00107 * 22 20 18 26 26 C 1.46960 * 118.80978 * 55.48071 * 17 16 15 27 27 C 1.46963 * 120.59877 * 0.02562 * 14 12 11 28 28 C 1.38163 * 120.05288 * 0.22676 * 10 9 8 29 29 H 1.09002 * 109.47332 * 59.99442 * 1 2 3 30 30 H 1.09000 * 109.47491 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47249 * 299.99414 * 1 2 3 32 32 H 1.08001 * 120.00392 * 180.02562 * 2 1 3 33 33 H 1.07998 * 119.99783 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47321 * 15.00296 * 4 3 2 35 35 H 1.08997 * 109.47415 * 254.99817 * 4 3 2 36 36 H 1.08007 * 120.02402 * 359.97438 * 7 6 5 37 37 H 1.08002 * 119.96948 * 179.97438 * 8 7 6 38 38 H 1.08000 * 119.93942 * 179.97438 * 9 8 7 39 39 H 1.09001 * 109.47403 * 329.99889 * 11 10 9 40 40 H 1.09007 * 109.47129 * 209.99952 * 11 10 9 41 41 H 1.08996 * 109.61476 * 115.50253 * 15 14 12 42 42 H 1.09010 * 109.61052 * 354.99038 * 15 14 12 43 43 H 1.09003 * 109.60871 * 190.82753 * 16 15 14 44 44 H 1.08999 * 109.74926 * 70.40483 * 16 15 14 45 45 H 0.97003 * 120.00012 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.61464 * 64.26783 * 26 17 16 47 47 H 1.09004 * 109.60410 * 184.77119 * 26 17 16 48 48 H 1.08997 * 109.60925 * 244.49552 * 27 14 12 49 49 H 1.09004 * 109.60691 * 4.83230 * 27 14 12 50 50 H 1.07997 * 120.03066 * 179.73999 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 0.0006 5 8 1.9958 3.3282 0.9533 6 6 1.4316 4.5581 1.0794 7 6 0.3348 4.9025 0.3024 8 6 -0.2365 6.1534 0.4320 9 6 0.2841 7.0623 1.3349 10 6 1.3774 6.7220 2.1094 11 6 1.9425 7.7152 3.0919 12 6 1.2619 7.5451 4.4257 13 8 0.4024 6.7009 4.5647 14 7 1.6086 8.3312 5.4641 15 6 0.9531 8.1771 6.7704 16 6 0.3691 9.5322 7.1887 17 7 1.4091 10.5592 7.0349 18 6 1.7605 11.3586 8.0898 19 1 2.7592 11.7654 8.1497 20 6 0.8317 11.6505 9.0791 21 7 -0.4511 11.4584 8.8548 22 14 1.4019 12.3159 10.7287 23 1 2.1220 13.5983 10.5231 24 1 0.2244 12.5448 11.6040 25 1 2.3128 11.3341 11.3703 26 6 2.0605 10.7171 5.7271 27 6 2.6480 9.3587 5.3102 28 6 1.9557 5.4739 1.9798 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 2.0470 -0.9353 -0.0004 33 1 3.2419 1.1345 -0.0004 34 1 0.3672 2.2579 0.2670 35 1 1.4568 2.8875 -0.9919 36 1 -0.0714 4.1934 -0.4038 37 1 -1.0900 6.4220 -0.1729 38 1 -0.1638 8.0400 1.4344 39 1 1.7729 8.7271 2.7238 40 1 3.0131 7.5447 3.2058 41 1 1.6837 7.8496 7.5100 42 1 0.1521 7.4417 6.6933 43 1 0.0503 9.4873 8.2301 44 1 -0.4835 9.7771 6.5554 45 1 -1.1002 11.6628 9.5460 46 1 1.3268 11.0430 4.9898 47 1 2.8590 11.4552 5.8030 48 1 3.4996 9.1156 5.9455 49 1 2.9686 9.4016 4.2693 50 1 2.8124 5.2100 2.5821 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449949318.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:14 Heat of formation + Delta-G solvation = -0.894400 kcal Electronic energy + Delta-G solvation = -29312.534625 eV Core-core repulsion = 25306.386451 eV Total energy + Delta-G solvation = -4006.148175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.42131 -39.55861 -37.89586 -36.68289 -35.70136 -33.88882 -32.69713 -31.17581 -30.63685 -30.25772 -28.50562 -27.90128 -26.59996 -25.82762 -23.65693 -22.88680 -22.58768 -21.63528 -20.38132 -19.03655 -18.67436 -17.80548 -17.15748 -16.70516 -16.14348 -16.11972 -16.06466 -15.36072 -15.12352 -14.83669 -14.69861 -14.21909 -13.95040 -13.74036 -13.68283 -13.51369 -13.32911 -13.28938 -13.12427 -12.85072 -12.56247 -12.47522 -12.21655 -11.83057 -11.73705 -11.55653 -11.38977 -11.22130 -11.15344 -10.84883 -10.78709 -10.73125 -10.58714 -10.24673 -9.96568 -9.85787 -9.56330 -9.42423 -8.81530 -8.58679 -8.23572 -8.20682 -6.71560 -5.85114 -3.30720 1.25393 1.43509 1.60194 3.01745 3.13780 3.34914 3.40583 3.41502 3.44088 3.81525 4.38324 4.43992 4.58762 4.64951 4.72203 4.83628 4.86968 4.91264 4.95496 5.01060 5.13329 5.19019 5.24721 5.31255 5.33035 5.39947 5.47283 5.53322 5.56826 5.66424 5.73551 5.77260 5.89007 5.96903 6.11740 6.15834 6.22322 6.26554 6.34654 6.37840 6.39571 6.50332 6.57566 6.68619 6.70724 6.88225 7.26758 7.31439 7.55145 7.71675 7.93676 8.36015 8.60707 9.11604 9.74435 10.31225 11.22204 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024744 B = 0.001855 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.297330 B =15090.491423 C =15374.992697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 C -0.164 4.164 4 C 0.086 3.914 5 O -0.313 6.313 6 C 0.128 3.872 7 C -0.213 4.213 8 C -0.079 4.079 9 C -0.140 4.140 10 C -0.018 4.018 11 C -0.103 4.103 12 C 0.511 3.489 13 O -0.547 6.547 14 N -0.598 5.598 15 C 0.088 3.912 16 C 0.159 3.841 17 N -0.591 5.591 18 C -0.259 4.259 19 H 0.067 0.933 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.905 3.095 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.131 3.869 27 C 0.088 3.912 28 C -0.137 4.137 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.023 0.977 45 H 0.256 0.744 46 H 0.023 0.977 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.531 -16.267 -20.246 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C -0.182 4.182 4 C 0.011 3.989 5 O -0.227 6.227 6 C 0.083 3.917 7 C -0.232 4.232 8 C -0.097 4.097 9 C -0.159 4.159 10 C -0.019 4.019 11 C -0.143 4.143 12 C 0.298 3.702 13 O -0.425 6.425 14 N -0.331 5.331 15 C -0.036 4.036 16 C 0.032 3.968 17 N -0.314 5.314 18 C -0.388 4.388 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.544 5.544 22 Si 0.735 3.265 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.003 3.997 27 C -0.037 4.037 28 C -0.155 4.155 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.117 0.883 44 H 0.041 0.959 45 H 0.066 0.934 46 H 0.041 0.959 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.091 0.909 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.088 -16.737 -19.925 26.341 hybrid contribution 0.117 0.427 0.741 0.863 sum 4.205 -16.310 -19.184 25.529 Atomic orbital electron populations 1.20982 0.93177 1.02836 1.02302 1.22873 0.96452 0.97755 0.98869 1.22528 1.00464 0.92372 1.02798 1.21823 0.96919 0.88072 0.92093 1.86075 1.55647 1.22379 1.58583 1.18864 0.92693 0.84620 0.95510 1.21151 0.99176 0.98999 1.03853 1.20854 0.98660 0.92730 0.97488 1.20921 0.96889 1.00466 0.97594 1.19102 0.94768 0.93380 0.94633 1.20732 1.01290 0.99959 0.92344 1.20326 0.83253 0.81324 0.85275 1.90680 1.32768 1.35163 1.83861 1.48072 1.38977 1.34655 1.11362 1.22491 0.97307 1.01396 0.82360 1.21187 0.89534 0.83765 1.02302 1.43999 1.43855 1.37616 1.05888 1.19143 0.94934 1.25183 0.99549 0.91514 1.25092 0.94870 0.99411 1.00131 1.70016 0.99727 1.51614 1.33089 0.86337 0.77525 0.78884 0.83796 1.20828 1.21601 1.20937 1.21356 0.96306 0.92961 0.89069 1.22473 0.90376 0.90389 1.00497 1.20192 1.02811 0.92379 1.00162 0.91445 0.91665 0.91042 0.86382 0.86203 0.91124 0.91241 0.85891 0.85831 0.85900 0.87719 0.88041 0.92252 0.90186 0.88311 0.95893 0.93386 0.95870 0.91476 0.91537 0.90887 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.70 36.00 0.31 -0.47 16 2 C -0.14 -0.92 10.26 -36.03 -0.37 -1.29 16 3 C -0.16 -1.27 9.89 -36.03 -0.36 -1.63 16 4 C 0.09 0.75 4.87 36.00 0.18 0.93 16 5 O -0.31 -3.82 10.12 -19.42 -0.20 -4.02 16 6 C 0.13 1.65 6.69 -39.21 -0.26 1.39 16 7 C -0.21 -2.41 9.04 -39.43 -0.36 -2.77 16 8 C -0.08 -0.90 10.04 -39.61 -0.40 -1.30 16 9 C -0.14 -1.79 9.70 -39.56 -0.38 -2.18 16 10 C -0.02 -0.25 4.37 -104.65 -0.46 -0.70 16 11 C -0.10 -1.32 4.17 -29.04 -0.12 -1.44 16 12 C 0.51 8.88 7.69 -10.98 -0.08 8.80 16 13 O -0.55 -11.47 15.44 5.56 0.09 -11.39 16 14 N -0.60 -10.77 2.95 -172.24 -0.51 -11.27 16 15 C 0.09 1.79 6.59 -3.60 -0.02 1.76 16 16 C 0.16 3.78 5.51 -3.59 -0.02 3.76 16 17 N -0.59 -14.27 2.96 -171.80 -0.51 -14.78 16 18 C -0.26 -6.83 9.57 -15.06 -0.14 -6.98 16 19 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 20 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 21 N -0.90 -25.70 11.20 55.49 0.62 -25.08 16 22 Si 0.91 21.18 29.59 -169.99 -5.03 16.15 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.13 2.52 6.70 -3.40 -0.02 2.50 16 27 C 0.09 1.37 6.52 -3.39 -0.02 1.35 16 28 C -0.14 -1.86 9.64 -39.43 -0.38 -2.24 16 29 H 0.07 0.33 8.02 -51.93 -0.42 -0.08 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.46 7.49 -51.93 -0.39 0.08 16 32 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.07 0.58 5.50 -51.93 -0.29 0.29 16 35 H 0.07 0.52 7.66 -51.93 -0.40 0.12 16 36 H 0.12 1.08 6.30 -52.48 -0.33 0.75 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.10 1.15 7.67 -51.93 -0.40 0.75 16 40 H 0.10 1.06 7.85 -51.92 -0.41 0.66 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.65 6.99 -51.92 -0.36 1.29 16 43 H 0.10 2.60 6.00 -51.93 -0.31 2.29 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 48 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.07 0.87 5.91 -51.93 -0.31 0.56 16 50 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 402.94 15.07 6.07 6.07 Total: -1.00 -32.75 402.94 -10.26 -43.01 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.80 Total: 1.79 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -3.00 Total: -0.48 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.39 Total: -51.14 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.11 Total: -15.41 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.75 -10.26 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449949318.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.115 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds