Wall clock time and date at job start Wed Apr 1 2020 04:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.31006 * 120.00082 * 2 1 4 4 C 1.50692 * 119.99913 * 0.02562 * 3 2 1 5 5 O 1.42904 * 109.46885 * 134.99780 * 4 3 2 6 6 C 1.35899 * 116.99933 * 179.97438 * 5 4 3 7 7 C 1.38753 * 120.05848 * 0.02562 * 6 5 4 8 8 C 1.38123 * 119.94674 * 180.02562 * 7 6 5 9 9 C 1.38284 * 120.05228 * 0.02562 * 8 7 6 10 10 C 1.38242 * 120.11706 * 0.02562 * 9 8 7 11 11 C 1.50693 * 119.97393 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47115 * 90.00074 * 11 10 9 13 13 O 1.21279 * 120.00143 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99763 * 179.97438 * 12 11 10 15 15 C 1.46965 * 120.59323 * 179.97438 * 14 12 11 16 16 C 1.53374 * 108.63702 * 235.25034 * 15 14 12 17 17 N 1.46968 * 108.63080 * 310.57409 * 16 15 14 18 18 C 1.36934 * 120.58904 * 235.19759 * 17 16 15 19 19 H 1.08009 * 119.99376 * 151.84519 * 18 17 16 20 20 C 1.38804 * 120.00824 * 331.57781 * 18 17 16 21 21 N 1.31627 * 119.99593 * 342.82852 * 20 18 17 22 22 Si 1.86794 * 120.00637 * 162.82757 * 20 18 17 23 23 H 1.48504 * 109.47167 * 59.99793 * 22 20 18 24 24 H 1.48497 * 109.47420 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47203 * 300.00107 * 22 20 18 26 26 C 1.46960 * 118.80978 * 55.48071 * 17 16 15 27 27 C 1.46963 * 120.59877 * 0.02562 * 14 12 11 28 28 C 1.38163 * 120.05288 * 0.22676 * 10 9 8 29 29 H 1.09002 * 109.47332 * 59.99442 * 1 2 3 30 30 H 1.09000 * 109.47491 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47249 * 299.99414 * 1 2 3 32 32 H 1.08001 * 120.00392 * 180.02562 * 2 1 3 33 33 H 1.07998 * 119.99783 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47321 * 15.00296 * 4 3 2 35 35 H 1.08997 * 109.47415 * 254.99817 * 4 3 2 36 36 H 1.08007 * 120.02402 * 359.97438 * 7 6 5 37 37 H 1.08002 * 119.96948 * 179.97438 * 8 7 6 38 38 H 1.08000 * 119.93942 * 179.97438 * 9 8 7 39 39 H 1.09001 * 109.47403 * 329.99889 * 11 10 9 40 40 H 1.09007 * 109.47129 * 209.99952 * 11 10 9 41 41 H 1.08996 * 109.61476 * 115.50253 * 15 14 12 42 42 H 1.09010 * 109.61052 * 354.99038 * 15 14 12 43 43 H 1.09003 * 109.60871 * 190.82753 * 16 15 14 44 44 H 1.08999 * 109.74926 * 70.40483 * 16 15 14 45 45 H 0.97003 * 120.00012 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.61464 * 64.26783 * 26 17 16 47 47 H 1.09004 * 109.60410 * 184.77119 * 26 17 16 48 48 H 1.08997 * 109.60925 * 244.49552 * 27 14 12 49 49 H 1.09004 * 109.60691 * 4.83230 * 27 14 12 50 50 H 1.07997 * 120.03066 * 179.73999 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 0.0006 5 8 1.9958 3.3282 0.9533 6 6 1.4316 4.5581 1.0794 7 6 0.3348 4.9025 0.3024 8 6 -0.2365 6.1534 0.4320 9 6 0.2841 7.0623 1.3349 10 6 1.3774 6.7220 2.1094 11 6 1.9425 7.7152 3.0919 12 6 1.2619 7.5451 4.4257 13 8 0.4024 6.7009 4.5647 14 7 1.6086 8.3312 5.4641 15 6 0.9531 8.1771 6.7704 16 6 0.3691 9.5322 7.1887 17 7 1.4091 10.5592 7.0349 18 6 1.7605 11.3586 8.0898 19 1 2.7592 11.7654 8.1497 20 6 0.8317 11.6505 9.0791 21 7 -0.4511 11.4584 8.8548 22 14 1.4019 12.3159 10.7287 23 1 2.1220 13.5983 10.5231 24 1 0.2244 12.5448 11.6040 25 1 2.3128 11.3341 11.3703 26 6 2.0605 10.7171 5.7271 27 6 2.6480 9.3587 5.3102 28 6 1.9557 5.4739 1.9798 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 2.0470 -0.9353 -0.0004 33 1 3.2419 1.1345 -0.0004 34 1 0.3672 2.2579 0.2670 35 1 1.4568 2.8875 -0.9919 36 1 -0.0714 4.1934 -0.4038 37 1 -1.0900 6.4220 -0.1729 38 1 -0.1638 8.0400 1.4344 39 1 1.7729 8.7271 2.7238 40 1 3.0131 7.5447 3.2058 41 1 1.6837 7.8496 7.5100 42 1 0.1521 7.4417 6.6933 43 1 0.0503 9.4873 8.2301 44 1 -0.4835 9.7771 6.5554 45 1 -1.1002 11.6628 9.5460 46 1 1.3268 11.0430 4.9898 47 1 2.8590 11.4552 5.8030 48 1 3.4996 9.1156 5.9455 49 1 2.9686 9.4016 4.2693 50 1 2.8124 5.2100 2.5821 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449949318.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:13 Heat of formation + Delta-G solvation = -18.619052 kcal Electronic energy + Delta-G solvation = -29313.303224 eV Core-core repulsion = 25306.386451 eV Total energy + Delta-G solvation = -4006.916773 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.43341 -40.79637 -38.90827 -38.18577 -36.30558 -35.61771 -33.76161 -33.01938 -31.97897 -31.33898 -29.19416 -29.11482 -28.09748 -26.49699 -25.40507 -24.42487 -23.53106 -22.79426 -21.81815 -20.13620 -19.62093 -18.79999 -18.69711 -17.78330 -17.40405 -17.01920 -16.95270 -16.76275 -16.68125 -16.19497 -15.66715 -15.47736 -15.32598 -15.06387 -14.95497 -14.68608 -14.58543 -14.22843 -14.20382 -13.99777 -13.65739 -13.35146 -13.31561 -13.09930 -12.86291 -12.68323 -12.62193 -12.49343 -12.44693 -12.29679 -12.08177 -12.02197 -11.95352 -11.83333 -11.67175 -11.56368 -10.83136 -10.59029 -10.10679 -9.80219 -9.77014 -9.13474 -8.64659 -7.87663 -5.36387 0.32427 0.51028 1.04299 1.48507 1.51329 1.57690 1.68023 2.08429 2.39801 2.51847 2.82136 3.27169 3.61381 3.63713 3.76468 3.82726 3.93515 4.04018 4.12039 4.21746 4.26847 4.27765 4.30327 4.34098 4.41391 4.42070 4.42744 4.51816 4.57053 4.63416 4.67738 4.74664 4.79010 4.81969 4.91083 5.02147 5.07757 5.08688 5.09952 5.27550 5.32679 5.46677 5.47635 5.60976 5.61723 5.63459 5.69530 5.72470 5.84604 6.36130 6.46773 6.56034 7.10133 7.22886 7.80439 8.33627 9.17335 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024744 B = 0.001855 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.297330 B =15090.491423 C =15374.992697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.132 4.132 3 C -0.185 4.185 4 C 0.081 3.919 5 O -0.330 6.330 6 C 0.115 3.885 7 C -0.213 4.213 8 C -0.082 4.082 9 C -0.157 4.157 10 C -0.033 4.033 11 C -0.094 4.094 12 C 0.509 3.491 13 O -0.588 6.588 14 N -0.603 5.603 15 C 0.103 3.897 16 C 0.171 3.829 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.076 0.924 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.969 3.031 23 H -0.273 1.273 24 H -0.299 1.299 25 H -0.278 1.278 26 C 0.124 3.876 27 C 0.097 3.903 28 C -0.157 4.157 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.133 0.867 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.067 0.933 44 H -0.008 1.008 45 H 0.250 0.750 46 H 0.018 0.982 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.123 0.877 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.115 -16.789 -22.166 28.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C -0.203 4.203 4 C 0.007 3.993 5 O -0.245 6.245 6 C 0.070 3.930 7 C -0.232 4.232 8 C -0.100 4.100 9 C -0.175 4.175 10 C -0.034 4.034 11 C -0.133 4.133 12 C 0.299 3.701 13 O -0.469 6.469 14 N -0.335 5.335 15 C -0.022 4.022 16 C 0.044 3.956 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.094 0.906 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.797 3.203 23 H -0.198 1.198 24 H -0.225 1.225 25 H -0.204 1.204 26 C -0.002 4.002 27 C -0.027 4.027 28 C -0.176 4.176 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.151 0.849 33 H 0.137 0.863 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.010 0.990 45 H 0.059 0.941 46 H 0.036 0.964 47 H 0.099 0.901 48 H 0.093 0.907 49 H 0.141 0.859 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.722 -17.255 -21.886 28.452 hybrid contribution -0.403 0.512 1.238 1.399 sum 5.319 -16.743 -20.649 27.111 Atomic orbital electron populations 1.21041 0.92640 1.03695 1.02266 1.23125 0.97014 0.97946 0.96909 1.22559 1.00599 0.92376 1.04732 1.22034 0.97199 0.88028 0.92059 1.86054 1.56311 1.22476 1.59655 1.19068 0.93255 0.84913 0.95777 1.21459 0.98481 0.99500 1.03720 1.21213 0.99121 0.92425 0.97200 1.21182 0.96962 1.01276 0.98073 1.19231 0.95368 0.93599 0.95184 1.20770 1.02280 1.01216 0.89024 1.21154 0.82522 0.80098 0.86347 1.90661 1.34682 1.36884 1.84632 1.48158 1.39332 1.35530 1.10527 1.22051 0.97231 0.98676 0.84209 1.20855 0.89128 0.85842 0.99767 1.44252 1.43922 1.37495 1.07566 1.19542 0.95171 1.24308 1.00210 0.90602 1.25863 0.94914 1.00565 1.03390 1.70182 1.00808 1.53600 1.33735 0.85317 0.76673 0.78577 0.79718 1.19809 1.22523 1.20373 1.21597 0.96277 0.95746 0.86590 1.22520 0.89320 0.87192 1.03637 1.20356 1.03361 0.92962 1.00873 0.90528 0.90439 0.91953 0.84903 0.86252 0.90633 0.89964 0.83481 0.83249 0.85173 0.85229 0.85100 0.91888 0.91133 0.91481 0.99009 0.94113 0.96359 0.90059 0.90686 0.85949 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.70 71.23 0.62 -0.75 16 2 C -0.13 -1.51 10.26 25.64 0.26 -1.25 16 3 C -0.18 -2.68 9.89 25.64 0.25 -2.43 16 4 C 0.08 1.33 4.87 71.23 0.35 1.67 16 5 O -0.33 -7.90 10.12 -92.42 -0.94 -8.84 16 6 C 0.11 2.87 6.69 22.51 0.15 3.02 16 7 C -0.21 -4.46 9.04 22.37 0.20 -4.26 16 8 C -0.08 -1.70 10.04 22.25 0.22 -1.48 16 9 C -0.16 -3.75 9.70 22.28 0.22 -3.53 16 10 C -0.03 -0.85 4.37 -19.88 -0.09 -0.93 16 11 C -0.09 -2.13 4.17 29.10 0.12 -2.01 16 12 C 0.51 17.00 7.69 87.66 0.67 17.68 16 13 O -0.59 -24.71 15.44 -3.02 -0.05 -24.75 16 14 N -0.60 -20.90 2.95 -817.24 -2.41 -23.31 16 15 C 0.10 4.25 6.59 86.42 0.57 4.82 16 16 C 0.17 8.44 5.51 86.42 0.48 8.91 16 17 N -0.61 -29.44 2.96 -697.44 -2.06 -31.50 16 18 C -0.26 -13.82 9.57 84.03 0.80 -13.02 16 19 H 0.08 3.79 7.89 -2.91 -0.02 3.77 16 20 C -0.05 -2.84 4.91 84.86 0.42 -2.43 16 21 N -0.94 -55.30 11.20 21.65 0.24 -55.06 16 22 Si 0.97 43.98 29.59 68.60 2.03 46.01 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 26 C 0.12 4.56 6.70 86.55 0.58 5.14 16 27 C 0.10 2.74 6.52 86.55 0.56 3.30 16 28 C -0.16 -4.15 9.64 22.37 0.22 -3.93 16 29 H 0.08 0.61 8.02 -2.39 -0.02 0.59 16 30 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.74 7.49 -2.38 -0.02 0.73 16 32 H 0.13 1.10 8.06 -2.91 -0.02 1.07 16 33 H 0.12 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.08 1.14 5.50 -2.38 -0.01 1.12 16 35 H 0.08 1.09 7.66 -2.39 -0.02 1.08 16 36 H 0.15 2.23 6.30 -2.91 -0.02 2.21 16 37 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.13 2.32 7.67 -2.39 -0.02 2.30 16 40 H 0.13 2.22 7.85 -2.38 -0.02 2.20 16 41 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.07 3.02 6.99 -2.38 -0.02 3.01 16 43 H 0.07 3.72 6.00 -2.39 -0.01 3.71 16 44 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 45 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 46 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.08 2.75 7.93 -2.39 -0.02 2.73 16 48 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.12 2.30 5.91 -2.39 -0.01 2.28 16 50 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -73.52 402.94 4.35 -69.17 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.92 Total: 19.75 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 6.61 Total: 8.53 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -4.23 Total: -109.87 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.98 Total: -33.59 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -73.52 4.35 -69.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449949318.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.551 kcal (2) G-P(sol) polarization free energy of solvation -73.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds