Wall clock time and date at job start Wed Apr 1 2020 05:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46973 * 2 1 4 4 C 1.50691 * 109.46967 * 239.99949 * 2 1 3 5 5 H 1.07998 * 120.00437 * 239.99619 * 4 2 1 6 6 C 1.37882 * 120.00096 * 60.00112 * 4 2 1 7 7 N 1.31512 * 119.99872 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00076 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47263 * 60.00059 * 8 6 4 10 10 H 1.48502 * 109.46813 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46921 * 299.99991 * 8 6 4 12 12 C 1.52996 * 109.47053 * 120.00033 * 2 1 3 13 13 S 1.81404 * 109.47438 * 299.99919 * 12 2 1 14 14 O 1.42102 * 110.54037 * 68.37690 * 13 12 2 15 15 O 1.42096 * 110.54050 * 291.62710 * 13 12 2 16 16 N 1.65598 * 104.45238 * 180.02562 * 13 12 2 17 17 C 1.47421 * 125.64861 * 90.02023 * 16 13 12 18 18 C 1.54908 * 104.83100 * 155.82457 * 17 16 13 19 19 C 1.55160 * 101.58019 * 37.01403 * 18 17 16 20 20 H 1.08999 * 110.71873 * 83.03507 * 19 18 17 21 21 C 1.52999 * 110.72081 * 206.13299 * 19 18 17 22 22 N 1.46907 * 109.46903 * 293.54484 * 21 19 18 23 23 C 1.47887 * 111.01481 * 69.12508 * 22 21 19 24 24 C 1.54908 * 104.77420 * 146.33028 * 23 22 21 25 25 C 1.55138 * 101.68619 * 322.97931 * 24 23 22 26 26 C 1.47444 * 110.99660 * 190.00196 * 22 21 19 27 27 C 1.47026 * 125.64830 * 269.97530 * 16 13 12 28 28 H 1.08999 * 109.46878 * 299.99577 * 1 2 3 29 29 H 1.08999 * 109.47548 * 59.99966 * 1 2 3 30 30 H 1.08999 * 109.47286 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47077 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47496 * 300.00574 * 3 2 1 33 33 H 1.09009 * 109.47298 * 60.00009 * 3 2 1 34 34 H 0.96994 * 120.00318 * 179.97438 * 7 6 4 35 35 H 1.08996 * 109.47325 * 180.02562 * 12 2 1 36 36 H 1.08999 * 109.47219 * 59.99782 * 12 2 1 37 37 H 1.08998 * 110.36247 * 36.99547 * 17 16 13 38 38 H 1.08998 * 110.46479 * 274.71247 * 17 16 13 39 39 H 1.08992 * 111.00973 * 278.94104 * 18 17 16 40 40 H 1.09002 * 111.03833 * 155.09669 * 18 17 16 41 41 H 1.09005 * 109.47195 * 173.54929 * 21 19 18 42 42 H 1.08994 * 109.47178 * 53.54210 * 21 19 18 43 43 H 1.08993 * 110.35657 * 27.51601 * 23 22 21 44 44 H 1.09005 * 110.40536 * 265.16436 * 23 22 21 45 45 H 1.09002 * 110.99023 * 204.86730 * 24 23 22 46 46 H 1.08995 * 110.99233 * 81.08878 * 24 23 22 47 47 H 1.08998 * 110.70667 * 154.01981 * 25 24 23 48 48 H 1.09004 * 110.70438 * 277.08217 * 25 24 23 49 49 H 1.08998 * 109.89066 * 117.34098 * 26 22 21 50 50 H 1.09001 * 109.89084 * 356.14657 * 26 22 21 51 51 H 1.08992 * 109.88390 * 61.68241 * 27 16 13 52 52 H 1.09005 * 109.87410 * 300.51995 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8280 -2.5197 -4.0082 10 1 1.8268 -0.4199 -5.2204 11 1 3.8075 -1.1189 -4.0077 12 6 2.0400 -0.7212 1.2492 13 16 1.4354 0.1338 2.7304 14 8 0.0280 -0.0184 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0542 -0.7400 3.9936 17 6 3.3529 -0.5012 4.6490 18 6 3.1969 -1.1011 6.0687 19 6 2.3306 -2.3562 5.7830 20 1 2.9533 -3.1875 5.4525 21 6 1.5204 -2.7478 7.0204 22 7 2.4327 -3.1936 8.0821 23 6 3.2290 -2.0630 8.6064 24 6 3.4260 -2.3821 10.1094 25 6 2.0604 -3.0201 10.4768 26 6 1.6865 -3.8009 9.1993 27 6 1.3989 -1.8820 4.6479 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 0.7087 1.1613 -3.4843 35 1 3.1300 -0.7209 1.2495 36 1 1.6767 -1.7489 1.2492 37 1 3.5564 0.5679 4.7093 38 1 4.1517 -1.0088 4.1084 39 1 2.6759 -0.4091 6.7302 40 1 4.1652 -1.3810 6.4838 41 1 0.8364 -3.5574 6.7656 42 1 0.9505 -1.8867 7.3690 43 1 2.6839 -1.1270 8.4853 44 1 4.1929 -2.0101 8.1001 45 1 3.5982 -1.4711 10.6826 46 1 4.2402 -3.0920 10.2544 47 1 2.1668 -3.6966 11.3248 48 1 1.3201 -2.2492 10.6910 49 1 1.9694 -4.8479 9.3086 50 1 0.6149 -3.7213 9.0163 51 1 1.2518 -2.6872 3.9282 52 1 0.4392 -1.5716 5.0613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451233029.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:23 Heat of formation + Delta-G solvation = -85.664951 kcal Electronic energy + Delta-G solvation = -29721.560080 eV Core-core repulsion = 25847.179929 eV Total energy + Delta-G solvation = -3874.380150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.54448 -38.80698 -38.16270 -38.13878 -36.92138 -34.03282 -33.64224 -31.30903 -30.20886 -29.55707 -28.33476 -27.72011 -27.26454 -25.84361 -23.62342 -21.78667 -21.52559 -21.38662 -21.22107 -19.84247 -18.84135 -17.90665 -17.66483 -16.96029 -16.84364 -16.77218 -16.61972 -15.89028 -15.40631 -15.12273 -14.89342 -14.65067 -14.50048 -14.44655 -14.35401 -14.23679 -13.86329 -13.56707 -13.46525 -13.18629 -13.07195 -13.05723 -12.88053 -12.82546 -12.64757 -12.60719 -12.53147 -12.21204 -12.17262 -12.12092 -11.99996 -11.98085 -11.60786 -11.59214 -11.56643 -11.49130 -11.38367 -11.29715 -10.67056 -10.42555 -9.88732 -9.22434 -8.04058 -6.23025 -0.68789 1.44888 1.45025 1.52578 1.79634 2.43437 2.87358 2.94287 3.16103 3.19710 3.60148 3.67696 3.81317 3.85419 3.96841 4.01973 4.14322 4.17250 4.33787 4.41879 4.46361 4.54650 4.56470 4.58594 4.63655 4.71168 4.75079 4.79552 4.83514 4.83690 4.93576 4.95740 4.99559 5.01732 5.03197 5.04873 5.09622 5.13175 5.15610 5.30796 5.35593 5.36670 5.39575 5.46974 5.54890 5.62785 5.94648 6.08982 6.09088 6.16440 6.32280 6.81192 7.45090 8.95732 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025993 B = 0.002391 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.968104 B =11708.582562 C =11951.029627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.068 3.932 3 C -0.159 4.159 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.271 1.271 12 C -0.584 4.584 13 S 2.626 3.374 14 O -0.988 6.988 15 O -0.987 6.987 16 N -1.018 6.018 17 C 0.101 3.899 18 C -0.119 4.119 19 C -0.080 4.080 20 H 0.103 0.897 21 C 0.062 3.938 22 N -0.536 5.536 23 C 0.031 3.969 24 C -0.131 4.131 25 C -0.142 4.142 26 C 0.038 3.962 27 C 0.114 3.886 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.262 0.738 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.047 0.953 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.064 0.936 49 H 0.080 0.920 50 H 0.054 0.946 51 H 0.076 0.924 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.614 -9.367 24.833 27.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.066 3.934 3 C -0.217 4.217 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.183 4.183 7 N -0.547 5.547 8 Si 0.782 3.218 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.717 4.717 13 S 2.726 3.274 14 O -0.979 6.979 15 O -0.978 6.978 16 N -0.857 5.857 17 C -0.024 4.024 18 C -0.157 4.157 19 C -0.100 4.100 20 H 0.122 0.878 21 C -0.067 4.067 22 N -0.260 5.260 23 C -0.096 4.096 24 C -0.169 4.169 25 C -0.180 4.180 26 C -0.090 4.090 27 C -0.011 4.011 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.073 0.927 51 H 0.094 0.906 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.257 -8.791 24.513 26.567 hybrid contribution -0.301 0.043 -1.241 1.278 sum 4.956 -8.747 23.272 25.351 Atomic orbital electron populations 1.22204 0.97739 1.00471 1.01302 1.17933 0.92360 0.92174 0.90895 1.22201 0.99831 0.98368 1.01300 1.21241 1.31759 1.12322 0.90354 0.91936 1.25706 0.95174 0.95686 1.01735 1.69933 1.37084 1.23674 1.23970 0.85646 0.78756 0.78708 0.78714 1.19690 1.21257 1.19652 1.30495 1.12371 1.13282 1.15508 1.04399 0.73602 0.74296 0.75131 1.93485 1.31234 1.86976 1.86189 1.93483 1.78594 1.39499 1.86196 1.58535 1.31119 1.47428 1.48622 1.22361 0.84030 1.01609 0.94373 1.23148 1.01849 0.96213 0.94538 1.22134 0.96304 0.98459 0.93149 0.87842 1.22241 0.93844 0.99382 0.91245 1.63537 1.23738 1.28659 1.10076 1.23463 0.98841 0.92270 0.95006 1.22754 0.97537 1.01329 0.95263 1.22779 0.97345 0.99826 0.98064 1.22865 0.96986 0.99596 0.89533 1.21909 0.96308 0.87337 0.95578 0.95043 0.90947 0.94128 0.94090 0.90965 0.95031 0.92866 0.84745 0.84809 0.90906 0.89792 0.90979 0.87151 0.89897 0.94851 0.93447 0.89123 0.90173 0.90502 0.89831 0.91767 0.90215 0.92714 0.90554 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.08 7.78 71.98 0.56 -7.52 16 2 C 0.07 3.37 0.52 -52.93 -0.03 3.34 16 3 C -0.16 -8.06 7.77 71.98 0.56 -7.50 16 4 C -0.52 -27.25 8.01 25.60 0.21 -27.05 16 5 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 6 C 0.02 0.88 5.15 84.66 0.44 1.31 16 7 N -0.91 -50.74 9.35 21.45 0.20 -50.54 16 8 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 C -0.58 -22.77 5.12 71.98 0.37 -22.40 16 13 S 2.63 99.49 4.68 -56.49 -0.26 99.23 16 14 O -0.99 -42.52 15.22 -127.65 -1.94 -44.46 16 15 O -0.99 -42.26 14.90 -127.65 -1.90 -44.16 16 16 N -1.02 -28.38 3.62 -506.45 -1.83 -30.21 16 17 C 0.10 2.21 7.07 86.86 0.61 2.82 16 18 C -0.12 -1.91 4.69 31.99 0.15 -1.76 16 19 C -0.08 -1.33 3.18 -9.61 -0.03 -1.36 16 20 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 21 C 0.06 0.94 4.15 86.30 0.36 1.30 16 22 N -0.54 -7.60 5.16 -885.40 -4.57 -12.17 16 23 C 0.03 0.38 4.90 86.77 0.43 0.81 16 24 C -0.13 -1.31 7.08 31.98 0.23 -1.08 16 25 C -0.14 -1.43 6.94 31.77 0.22 -1.21 16 26 C 0.04 0.46 6.87 86.65 0.59 1.06 16 27 C 0.11 2.60 6.49 86.73 0.56 3.16 16 28 H 0.03 1.52 5.46 -2.39 -0.01 1.51 16 29 H 0.07 3.98 6.07 -2.39 -0.01 3.97 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 33 H 0.03 1.53 5.46 -2.38 -0.01 1.51 16 34 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 35 H 0.13 4.70 8.14 -2.39 -0.02 4.68 16 36 H 0.13 4.69 8.14 -2.39 -0.02 4.67 16 37 H 0.07 1.74 7.66 -2.39 -0.02 1.72 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.20 6.69 -2.39 -0.02 1.18 16 40 H 0.11 1.28 6.17 -2.39 -0.01 1.27 16 41 H 0.08 1.19 8.03 -2.38 -0.02 1.17 16 42 H 0.03 0.55 7.81 -2.39 -0.02 0.54 16 43 H 0.05 0.63 6.11 -2.39 -0.01 0.61 16 44 H 0.09 1.01 6.22 -2.38 -0.01 0.99 16 45 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.05 0.66 7.55 -2.39 -0.02 0.65 16 51 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.06 1.50 7.82 -2.38 -0.02 1.49 16 Total: -1.00 -67.32 390.39 -2.18 -69.50 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.89 Total: 24.50 kcal Atomic # 6 Polarization: -61.29 SS G_CDS: 5.22 Total: -56.06 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -6.20 Total: -92.92 kcal Atomic # 8 Polarization: -84.78 SS G_CDS: -3.84 Total: -88.62 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 99.49 SS G_CDS: -0.26 Total: 99.23 kcal Total: -67.32 -2.18 -69.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451233029.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.168 kcal (2) G-P(sol) polarization free energy of solvation -67.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds