Wall clock time and date at job start Wed Apr 1 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00221 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.53004 * 109.47200 * 240.00561 * 2 1 3 13 13 S 1.81396 * 109.47142 * 59.99836 * 12 2 1 14 14 O 1.42102 * 110.54398 * 291.62648 * 13 12 2 15 15 O 1.42095 * 110.54373 * 68.37936 * 13 12 2 16 16 N 1.65608 * 104.44869 * 180.02562 * 13 12 2 17 17 C 1.47014 * 125.64734 * 269.69493 * 16 13 12 18 18 C 1.54334 * 107.26565 * 178.85007 * 17 16 13 19 19 C 1.55157 * 103.01909 * 338.13946 * 18 17 16 20 20 H 1.09005 * 110.99912 * 277.23203 * 19 18 17 21 21 C 1.52995 * 111.03640 * 153.40114 * 19 18 17 22 22 N 1.46896 * 109.47791 * 72.77940 * 21 19 18 23 23 C 1.48543 * 110.99668 * 52.60590 * 22 21 19 24 24 C 1.54932 * 103.22449 * 159.72388 * 23 22 21 25 25 C 1.54596 * 102.92482 * 322.57974 * 24 23 22 26 26 C 1.47902 * 111.00312 * 169.99518 * 22 21 19 27 27 C 1.47420 * 125.64511 * 89.99941 * 16 13 12 28 28 H 1.09004 * 109.46783 * 299.99970 * 1 2 3 29 29 H 1.09005 * 109.46870 * 59.99629 * 1 2 3 30 30 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47438 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47069 * 300.00573 * 3 2 1 33 33 H 1.09004 * 109.46658 * 59.99952 * 3 2 1 34 34 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47211 * 180.02562 * 12 2 1 36 36 H 1.09007 * 109.46376 * 299.99965 * 12 2 1 37 37 H 1.09004 * 109.87966 * 298.39190 * 17 16 13 38 38 H 1.08998 * 109.88986 * 59.55696 * 17 16 13 39 39 H 1.08998 * 110.84743 * 219.66921 * 18 17 16 40 40 H 1.09001 * 110.67124 * 96.52371 * 18 17 16 41 41 H 1.08999 * 109.47018 * 192.78352 * 21 19 18 42 42 H 1.09004 * 109.47345 * 312.77942 * 21 19 18 43 43 H 1.09006 * 110.66382 * 278.15356 * 23 22 21 44 44 H 1.09000 * 110.66492 * 41.28314 * 23 22 21 45 45 H 1.09005 * 110.72301 * 204.22624 * 24 23 22 46 46 H 1.08997 * 110.88345 * 81.01720 * 24 23 22 47 47 H 1.08993 * 110.31249 * 263.04616 * 25 24 23 48 48 H 1.09000 * 110.39240 * 140.91454 * 25 24 23 49 49 H 1.08993 * 109.91667 * 333.51651 * 26 22 21 50 50 H 1.09004 * 109.91060 * 94.61010 * 26 22 21 51 51 H 1.08999 * 110.37444 * 322.93059 * 27 16 13 52 52 H 1.09000 * 110.36924 * 85.25885 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0078 9 1 3.1365 -2.2942 3.6036 10 1 3.1332 -0.1973 4.8220 11 1 1.1526 -1.5964 4.8103 12 6 2.0400 -0.7211 -1.2493 13 16 1.4353 0.1341 -2.7304 14 8 0.0279 -0.0181 -2.8544 15 8 2.0480 1.4102 -2.8543 16 7 2.0530 -0.7406 -3.9937 17 6 3.3455 -0.4997 -4.6517 18 6 3.5086 -1.5738 -5.7479 19 6 2.5522 -2.7014 -5.2775 20 1 3.0328 -3.3357 -4.5326 21 6 2.0571 -3.5317 -6.4633 22 7 3.1497 -4.3800 -6.9575 23 6 3.7467 -5.1756 -5.8543 24 6 4.4571 -6.3347 -6.5973 25 6 3.4863 -6.6470 -7.7592 26 6 2.6521 -5.3656 -7.9416 27 6 1.3951 -1.8856 -4.6488 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7006 1.1553 3.4844 35 1 3.1300 -0.7215 -1.2491 36 1 1.6766 -1.7488 -1.2493 37 1 3.3539 0.4941 -5.0995 38 1 4.1535 -0.5881 -3.9255 39 1 4.5370 -1.9326 -5.7894 40 1 3.1982 -1.1843 -6.7174 41 1 1.2251 -4.1598 -6.1448 42 1 1.7253 -2.8658 -7.2599 43 1 4.4671 -4.5782 -5.2953 44 1 2.9699 -5.5607 -5.1937 45 1 4.5684 -7.2005 -5.9445 46 1 5.4263 -6.0148 -6.9798 47 1 2.8403 -7.4850 -7.4976 48 1 4.0428 -6.8689 -8.6698 49 1 1.5995 -5.5780 -7.7547 50 1 2.7785 -4.9774 -8.9523 51 1 0.8618 -2.4883 -3.9137 52 1 0.7115 -1.5381 -5.4235 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451233032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:29 Heat of formation + Delta-G solvation = -89.458163 kcal Electronic energy + Delta-G solvation = -29747.444924 eV Core-core repulsion = 25872.900288 eV Total energy + Delta-G solvation = -3874.544636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.38378 -38.88211 -38.16153 -38.14509 -36.92318 -34.09253 -33.64793 -31.18679 -30.12129 -29.64708 -28.35712 -27.72275 -27.27370 -25.77734 -23.30071 -22.52840 -21.63971 -21.30768 -20.65997 -19.81287 -18.82229 -17.90452 -17.65902 -16.97455 -16.85693 -16.74550 -16.67881 -15.93001 -15.44508 -15.04791 -14.82623 -14.77436 -14.47975 -14.45223 -14.42820 -14.14429 -13.86467 -13.72775 -13.37924 -13.28081 -13.11486 -13.00706 -12.92460 -12.78340 -12.55296 -12.46261 -12.33202 -12.22613 -12.14335 -12.12015 -12.01256 -11.97664 -11.83431 -11.65814 -11.60036 -11.42891 -11.40243 -11.34807 -10.66299 -10.44201 -9.90097 -9.30923 -8.04859 -6.23835 -0.69306 1.41974 1.44804 1.54602 1.79074 2.42847 2.87288 2.96864 3.15800 3.19341 3.56639 3.72008 3.78539 3.85998 4.00463 4.04863 4.13486 4.18546 4.35253 4.40837 4.42059 4.49415 4.52180 4.57055 4.67338 4.75567 4.76009 4.81137 4.82484 4.83449 4.94179 4.95656 4.99671 5.02907 5.04152 5.08049 5.10718 5.14794 5.20303 5.26071 5.35537 5.36846 5.42718 5.45550 5.53122 5.62657 5.94333 5.99978 6.08795 6.12912 6.31799 6.81028 7.44651 8.95351 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.002798 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.562512 B =10005.836986 C =11192.421247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.517 4.517 5 H 0.063 0.937 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.583 4.583 13 S 2.625 3.375 14 O -0.987 6.987 15 O -0.987 6.987 16 N -1.017 6.017 17 C 0.105 3.895 18 C -0.099 4.099 19 C -0.092 4.092 20 H 0.092 0.908 21 C 0.060 3.940 22 N -0.522 5.522 23 C 0.027 3.973 24 C -0.123 4.123 25 C -0.130 4.130 26 C 0.032 3.968 27 C 0.117 3.883 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.262 0.738 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.042 0.958 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.043 0.957 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.044 0.956 50 H 0.080 0.920 51 H 0.076 0.924 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.573 -14.208 -21.025 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.067 3.933 3 C -0.218 4.218 4 C -0.556 4.556 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.782 3.218 9 H -0.189 1.189 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.716 4.716 13 S 2.725 3.275 14 O -0.978 6.978 15 O -0.978 6.978 16 N -0.856 5.856 17 C -0.019 4.019 18 C -0.138 4.138 19 C -0.113 4.113 20 H 0.110 0.890 21 C -0.068 4.068 22 N -0.246 5.246 23 C -0.100 4.100 24 C -0.161 4.161 25 C -0.168 4.168 26 C -0.096 4.096 27 C -0.008 4.008 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.063 0.937 50 H 0.099 0.901 51 H 0.094 0.906 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.278 -12.892 -21.185 25.582 hybrid contribution -0.350 -0.943 1.875 2.128 sum 5.928 -13.835 -19.310 24.483 Atomic orbital electron populations 1.22210 0.97745 1.00489 1.01337 1.17929 0.92338 0.92133 0.90866 1.22206 0.99850 0.98402 1.01296 1.21312 1.31567 1.12338 0.90361 0.91898 1.25695 0.95142 0.95680 1.01732 1.69949 1.37151 1.23780 1.23847 0.85536 0.78045 0.78737 0.79492 1.18893 1.20907 1.20914 1.30492 1.12362 1.13253 1.15490 1.04446 0.73645 0.74290 0.75106 1.93491 1.31126 1.86945 1.86203 1.93488 1.78565 1.39540 1.86175 1.58543 1.31232 1.47518 1.48337 1.22010 0.83547 1.00290 0.96081 1.22544 1.01115 0.92999 0.97163 1.22433 0.95308 0.96230 0.97304 0.88968 1.22202 0.92224 0.96061 0.96345 1.64812 1.28489 1.19406 1.11885 1.23320 0.98367 0.94662 0.93676 1.22481 0.98936 0.97734 0.96997 1.22398 0.98012 0.96851 0.99525 1.22927 0.97490 0.91851 0.97335 1.22164 0.95588 0.85928 0.97171 0.90940 0.95021 0.94096 0.94076 0.95024 0.90994 0.92878 0.84781 0.84822 0.91711 0.90915 0.88493 0.89917 0.93995 0.89731 0.89773 0.93876 0.90442 0.90787 0.91162 0.90368 0.93731 0.90119 0.90602 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.07 7.77 71.98 0.56 -7.51 16 2 C 0.07 3.40 0.52 -52.93 -0.03 3.37 16 3 C -0.16 -8.07 7.78 71.98 0.56 -7.51 16 4 C -0.52 -27.08 8.01 25.60 0.21 -26.87 16 5 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 6 C 0.02 0.90 5.15 84.65 0.44 1.33 16 7 N -0.91 -50.63 9.35 21.45 0.20 -50.43 16 8 Si 0.96 42.19 29.54 68.60 2.03 44.22 16 9 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 C -0.58 -22.60 5.12 71.98 0.37 -22.23 16 13 S 2.63 99.31 4.69 -56.49 -0.26 99.05 16 14 O -0.99 -42.23 15.22 -127.65 -1.94 -44.17 16 15 O -0.99 -42.47 15.22 -127.65 -1.94 -44.42 16 16 N -1.02 -28.40 3.62 -506.44 -1.83 -30.23 16 17 C 0.11 2.39 6.90 86.73 0.60 2.98 16 18 C -0.10 -1.62 6.37 31.79 0.20 -1.41 16 19 C -0.09 -1.53 2.78 -9.40 -0.03 -1.56 16 20 H 0.09 1.48 6.43 -2.38 -0.02 1.47 16 21 C 0.06 0.86 4.48 86.30 0.39 1.25 16 22 N -0.52 -7.31 5.34 -883.01 -4.72 -12.03 16 23 C 0.03 0.36 5.12 86.65 0.44 0.80 16 24 C -0.12 -1.34 7.06 31.80 0.22 -1.11 16 25 C -0.13 -1.30 6.93 31.47 0.22 -1.08 16 26 C 0.03 0.38 6.69 86.45 0.58 0.96 16 27 C 0.12 2.61 6.36 86.86 0.55 3.17 16 28 H 0.07 3.98 6.06 -2.38 -0.01 3.96 16 29 H 0.03 1.53 5.46 -2.38 -0.01 1.51 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.03 1.53 5.46 -2.39 -0.01 1.52 16 33 H 0.07 3.95 6.08 -2.38 -0.01 3.94 16 34 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 35 H 0.13 4.67 8.14 -2.39 -0.02 4.65 16 36 H 0.13 4.63 8.14 -2.39 -0.02 4.61 16 37 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.26 7.91 -2.39 -0.02 1.24 16 41 H 0.04 0.59 7.81 -2.39 -0.02 0.58 16 42 H 0.08 1.16 7.97 -2.39 -0.02 1.14 16 43 H 0.08 1.11 7.48 -2.38 -0.02 1.09 16 44 H 0.04 0.60 8.02 -2.39 -0.02 0.58 16 45 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.04 0.53 7.57 -2.39 -0.02 0.51 16 50 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 51 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.07 1.56 8.04 -2.39 -0.02 1.54 16 Total: -1.00 -66.86 397.53 -2.32 -69.18 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.87 Total: 24.25 kcal Atomic # 6 Polarization: -60.70 SS G_CDS: 5.28 Total: -55.42 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -6.35 Total: -92.69 kcal Atomic # 8 Polarization: -84.70 SS G_CDS: -3.89 Total: -88.59 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 99.31 SS G_CDS: -0.26 Total: 99.05 kcal Total: -66.86 -2.32 -69.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451233032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.274 kcal (2) G-P(sol) polarization free energy of solvation -66.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds