Wall clock time and date at job start Wed Apr 1 2020 04:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47170 * 2 1 4 4 C 1.53004 * 109.46789 * 240.00341 * 2 1 3 5 5 N 1.46498 * 109.47244 * 60.00310 * 4 2 1 6 6 S 1.65603 * 119.99899 * 164.99941 * 5 4 2 7 7 O 1.42099 * 104.27558 * 181.06918 * 6 5 4 8 8 O 1.42104 * 104.27639 * 308.92538 * 6 5 4 9 9 C 1.81402 * 104.44950 * 64.99549 * 6 5 4 10 10 C 1.52996 * 109.47072 * 173.74312 * 9 6 5 11 11 C 1.50706 * 115.55234 * 65.23492 * 10 9 6 12 12 H 1.07994 * 120.00151 * 264.76882 * 11 10 9 13 13 C 1.37871 * 119.99871 * 84.77164 * 11 10 9 14 14 N 1.31517 * 120.00239 * 2.07432 * 13 11 10 15 15 Si 1.86800 * 120.00106 * 182.07825 * 13 11 10 16 16 H 1.48503 * 109.47138 * 59.99762 * 15 13 11 17 17 H 1.48498 * 109.47100 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47028 * 300.00060 * 15 13 11 19 19 C 1.53003 * 117.50223 * 279.56778 * 10 9 6 20 20 C 1.53001 * 117.50044 * 210.90772 * 10 9 6 21 21 C 1.52995 * 109.47079 * 120.00352 * 2 1 3 22 22 N 1.46901 * 109.46967 * 284.53188 * 21 2 1 23 23 C 1.48537 * 111.00046 * 58.92442 * 22 21 2 24 24 C 1.54934 * 103.23153 * 159.71995 * 23 22 21 25 25 C 1.54603 * 102.91664 * 322.58286 * 24 23 22 26 26 C 1.47906 * 110.99948 * 176.31662 * 22 21 2 27 27 H 1.08998 * 109.47055 * 321.35357 * 1 2 3 28 28 H 1.08999 * 109.46834 * 81.35467 * 1 2 3 29 29 H 1.08997 * 109.46916 * 201.35068 * 1 2 3 30 30 H 1.09002 * 109.47345 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47491 * 300.00650 * 3 2 1 32 32 H 1.09003 * 109.47332 * 59.99807 * 3 2 1 33 33 H 1.09002 * 109.46350 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.47171 * 299.99488 * 4 2 1 35 35 H 0.96993 * 119.99883 * 344.99545 * 5 4 2 36 36 H 1.09000 * 109.47242 * 293.74264 * 9 6 5 37 37 H 1.08997 * 109.46884 * 53.74472 * 9 6 5 38 38 H 0.96997 * 120.00292 * 185.02594 * 14 13 11 39 39 H 1.09007 * 117.49275 * 359.97438 * 19 10 9 40 40 H 1.08998 * 117.50373 * 145.01613 * 19 10 9 41 41 H 1.09005 * 117.49894 * 214.97772 * 20 10 9 42 42 H 1.08993 * 117.49776 * 359.97310 * 20 10 9 43 43 H 1.08997 * 109.47324 * 44.53368 * 21 2 1 44 44 H 1.08997 * 109.47081 * 164.53535 * 21 2 1 45 45 H 1.09005 * 110.66358 * 278.15437 * 23 22 21 46 46 H 1.09002 * 110.66777 * 41.27868 * 23 22 21 47 47 H 1.08996 * 110.72664 * 204.22895 * 24 23 22 48 48 H 1.09004 * 110.72319 * 80.93528 * 24 23 22 49 49 H 1.08998 * 110.30941 * 263.03955 * 25 24 23 50 50 H 1.09007 * 110.38740 * 140.91652 * 25 24 23 51 51 H 1.08997 * 109.91577 * 333.50662 * 26 22 21 52 52 H 1.08997 * 109.91945 * 94.60810 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5517 -0.0305 -2.4454 6 16 2.2318 -0.3494 -3.9213 7 8 1.5364 0.5046 -4.8194 8 8 3.6282 -0.2018 -3.7029 9 6 1.8181 -2.0857 -4.2447 10 6 2.2612 -2.4604 -5.6603 11 6 3.7482 -2.4346 -5.9043 12 1 4.2109 -1.5552 -6.3271 13 6 4.5178 -3.5339 -5.5876 14 7 3.9490 -4.6196 -5.1109 15 14 6.3685 -3.4810 -5.8357 16 1 6.9473 -2.3887 -5.0127 17 1 6.9606 -4.7786 -5.4222 18 1 6.6690 -3.2334 -7.2687 19 6 1.3484 -2.0512 -6.8180 20 6 1.4424 -3.5206 -6.3996 21 6 2.0400 -0.7213 1.2492 22 7 1.8756 0.1510 2.4197 23 6 0.4507 0.5255 2.6084 24 6 0.3916 0.9577 4.0951 25 6 1.3528 -0.0386 4.7831 26 6 2.2770 -0.5462 3.6608 27 1 -0.3633 0.8026 0.6418 28 1 -0.3633 0.1545 -1.0160 29 1 -0.3633 -0.9571 0.3741 30 1 3.1301 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2493 35 1 0.8300 0.6135 -2.3729 36 1 2.3307 -2.7219 -3.5232 37 1 0.7411 -2.2259 -4.1520 38 1 4.4960 -5.3659 -4.8199 39 1 0.4318 -1.5153 -6.5709 40 1 1.8232 -1.7636 -7.7560 41 1 1.9791 -4.1992 -7.0626 42 1 0.5883 -3.9514 -5.8772 43 1 1.4705 -1.6388 1.3969 44 1 3.0949 -0.9648 1.1229 45 1 0.1814 1.3557 1.9554 46 1 -0.1992 -0.3314 2.4307 47 1 -0.6197 0.8517 4.4877 48 1 0.7473 1.9813 4.2136 49 1 0.7926 -0.8674 5.2158 50 1 1.9356 0.4665 5.5536 51 1 2.1554 -1.6224 3.5381 52 1 3.3154 -0.3146 3.8976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451452584.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:44 Heat of formation + Delta-G solvation = -43.488774 kcal Electronic energy + Delta-G solvation = -29833.640873 eV Core-core repulsion = 25961.089619 eV Total energy + Delta-G solvation = -3872.551254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.97095 -37.32355 -36.73077 -36.19024 -35.04498 -33.39745 -32.01985 -31.02644 -29.17750 -28.17126 -27.31145 -26.69757 -25.44466 -24.71858 -21.29616 -21.17073 -21.04218 -19.73873 -19.19853 -18.61906 -17.02790 -16.52088 -16.37511 -16.17880 -15.49971 -15.24766 -14.88137 -14.70613 -14.24391 -14.17987 -13.96277 -13.86918 -13.67610 -13.43787 -13.07257 -12.93294 -12.55156 -12.13761 -11.97805 -11.83485 -11.76901 -11.72255 -11.62738 -11.49033 -11.27246 -11.17239 -11.05703 -10.99973 -10.88077 -10.85787 -10.81056 -10.65545 -10.57507 -10.43272 -10.37273 -10.08594 -9.64933 -9.13863 -9.04091 -8.61726 -8.51063 -8.05732 -6.12338 -4.23915 1.10170 3.34142 3.35984 3.44935 3.46879 3.76432 4.34200 4.39590 4.40573 4.54598 4.62381 4.69925 4.73726 4.84075 4.99516 5.05316 5.16618 5.19665 5.23986 5.30510 5.31954 5.35604 5.47907 5.51454 5.53112 5.55387 5.62503 5.65884 5.70181 5.78256 5.81917 5.88557 5.90704 5.92671 5.98916 6.05823 6.23220 6.27432 6.31718 6.38706 6.41580 6.63244 6.68069 6.74799 6.83114 7.01326 7.23762 7.32210 7.45926 7.80817 8.21639 8.81940 9.47772 10.95197 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.002928 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.994888 B = 9560.228442 C =10336.973865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.067 4.067 3 C -0.131 4.131 4 C 0.127 3.873 5 N -1.130 6.130 6 S 2.608 3.392 7 O -0.975 6.975 8 O -0.950 6.950 9 C -0.554 4.554 10 C 0.041 3.959 11 C -0.514 4.514 12 H 0.067 0.933 13 C 0.081 3.919 14 N -0.876 5.876 15 Si 0.889 3.111 16 H -0.268 1.268 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.209 4.209 20 C -0.136 4.136 21 C 0.055 3.945 22 N -0.510 5.510 23 C 0.026 3.974 24 C -0.128 4.128 25 C -0.131 4.131 26 C 0.034 3.966 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.408 0.592 36 H 0.129 0.871 37 H 0.099 0.901 38 H 0.263 0.737 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.048 0.952 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.064 0.936 50 H 0.070 0.930 51 H 0.044 0.956 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 6.990 18.336 21.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.068 4.068 3 C -0.188 4.188 4 C 0.000 4.000 5 N -0.888 5.888 6 S 2.705 3.295 7 O -0.965 6.965 8 O -0.940 6.940 9 C -0.687 4.687 10 C 0.038 3.962 11 C -0.551 4.551 12 H 0.085 0.915 13 C -0.124 4.124 14 N -0.511 5.511 15 Si 0.715 3.285 16 H -0.192 1.192 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.247 4.247 20 C -0.175 4.175 21 C -0.074 4.074 22 N -0.234 5.234 23 C -0.102 4.102 24 C -0.166 4.166 25 C -0.169 4.169 26 C -0.094 4.094 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.242 0.758 36 H 0.147 0.853 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.066 0.934 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.062 0.938 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.027 7.731 17.742 20.952 hybrid contribution -0.160 -1.422 0.369 1.477 sum -8.187 6.309 18.111 20.853 Atomic orbital electron populations 1.22436 0.94600 1.02189 1.02575 1.20699 0.95761 0.97171 0.93215 1.21760 1.01636 0.94014 1.01414 1.21230 0.99844 0.94930 0.84011 1.55989 1.52929 1.56134 1.23737 1.05096 0.74420 0.78017 0.71976 1.93503 1.75329 1.64719 1.62987 1.93537 1.30880 1.85849 1.83686 1.29984 1.07623 1.22090 1.09039 1.18273 0.93027 1.01000 0.83883 1.20507 0.89262 1.00953 1.44348 0.91468 1.24942 0.98801 0.94565 0.94046 1.70000 1.35466 1.04627 1.41041 0.86684 0.85117 0.77544 0.79141 1.19249 1.21156 1.19907 1.23198 1.01318 0.99202 1.00947 1.22522 1.00578 0.90582 1.03808 1.22359 1.01825 0.93436 0.89750 1.64801 1.18157 1.38475 1.01955 1.23714 0.89645 1.00474 0.96328 1.22540 0.99145 0.99762 0.95130 1.22385 0.97622 0.99005 0.97882 1.22864 1.00141 0.96664 0.89748 0.91133 0.92137 0.92676 0.92323 0.93078 0.91490 0.89946 0.92022 0.75776 0.85291 0.88220 0.92770 0.90769 0.89586 0.89342 0.91711 0.94234 0.90022 0.88943 0.93417 0.91310 0.90828 0.91738 0.91143 0.93809 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 7.19 37.16 0.27 -1.17 16 2 C -0.07 -0.70 0.53 -154.51 -0.08 -0.78 16 3 C -0.13 -1.44 7.79 37.15 0.29 -1.15 16 4 C 0.13 1.66 4.96 -4.04 -0.02 1.64 16 5 N -1.13 -16.47 5.08 -10.61 -0.05 -16.53 16 6 S 2.61 52.16 5.19 -107.50 -0.56 51.60 16 7 O -0.97 -21.38 18.08 -57.54 -1.04 -22.42 16 8 O -0.95 -22.53 17.17 -57.54 -0.99 -23.52 16 9 C -0.55 -11.48 5.93 37.16 0.22 -11.26 16 10 C 0.04 0.99 1.39 -155.66 -0.22 0.77 16 11 C -0.51 -14.12 8.20 -34.44 -0.28 -14.40 16 12 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 13 C 0.08 2.22 5.43 -17.82 -0.10 2.12 16 14 N -0.88 -24.06 12.72 55.43 0.70 -23.36 16 15 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.21 -4.65 9.96 -26.69 -0.27 -4.92 16 20 C -0.14 -3.13 9.22 -26.69 -0.25 -3.37 16 21 C 0.06 0.54 4.15 -3.83 -0.02 0.53 16 22 N -0.51 -4.66 4.29 -230.45 -0.99 -5.65 16 23 C 0.03 0.20 4.19 -1.90 -0.01 0.19 16 24 C -0.13 -0.86 7.06 -24.87 -0.18 -1.04 16 25 C -0.13 -0.88 6.93 -25.37 -0.18 -1.05 16 26 C 0.03 0.27 6.70 -2.75 -0.02 0.26 16 27 H 0.07 0.55 4.78 -51.93 -0.25 0.30 16 28 H 0.06 0.56 6.26 -51.93 -0.33 0.23 16 29 H 0.05 0.47 7.33 -51.93 -0.38 0.09 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.57 7.20 -51.93 -0.37 0.20 16 32 H 0.07 0.67 5.74 -51.93 -0.30 0.37 16 33 H 0.08 1.19 7.70 -51.93 -0.40 0.79 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.41 5.09 6.46 -34.47 -0.22 4.87 16 36 H 0.13 2.73 8.14 -51.92 -0.42 2.31 16 37 H 0.10 1.74 8.09 -51.93 -0.42 1.32 16 38 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 39 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 41 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.04 0.37 7.61 -51.93 -0.40 -0.02 16 44 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 45 H 0.09 0.71 4.65 -51.93 -0.24 0.47 16 46 H 0.05 0.37 6.95 -51.93 -0.36 0.01 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 51 H 0.04 0.35 7.68 -51.93 -0.40 -0.04 16 52 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 405.33 15.07 6.11 6.11 Total: -1.00 -32.31 405.33 -11.76 -44.08 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -9.10 Total: 6.86 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: -0.83 Total: -33.64 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.34 Total: -45.54 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -2.03 Total: -45.94 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 52.16 SS G_CDS: -0.56 Total: 51.60 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.31 -11.76 -44.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451452584.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.588 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds