Wall clock time and date at job start Wed Apr 1 2020 05:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47001 * 2 1 4 4 C 1.50696 * 109.47036 * 240.00143 * 2 1 3 5 5 H 1.08004 * 119.99635 * 240.83543 * 4 2 1 6 6 C 1.37875 * 120.00237 * 60.83689 * 4 2 1 7 7 N 1.31519 * 119.99792 * 194.57844 * 6 4 2 8 8 Si 1.86797 * 120.00062 * 14.57412 * 6 4 2 9 9 H 1.48505 * 109.46716 * 84.45715 * 8 6 4 10 10 H 1.48501 * 109.47168 * 204.45501 * 8 6 4 11 11 H 1.48495 * 109.47145 * 324.45910 * 8 6 4 12 12 C 1.53000 * 109.46769 * 119.99729 * 2 1 3 13 13 S 1.81397 * 109.47305 * 299.99849 * 12 2 1 14 14 O 1.42102 * 110.53920 * 68.37967 * 13 12 2 15 15 O 1.42094 * 110.54704 * 291.62792 * 13 12 2 16 16 N 1.65607 * 104.44888 * 180.02562 * 13 12 2 17 17 C 1.46493 * 119.99880 * 65.00045 * 16 13 12 18 18 C 1.53000 * 109.47237 * 164.99827 * 17 16 13 19 19 C 1.53093 * 109.52688 * 294.68024 * 18 17 16 20 20 C 1.53041 * 109.29037 * 182.43096 * 19 18 17 21 21 N 1.46852 * 109.51190 * 59.18505 * 20 19 18 22 22 C 1.46900 * 110.99868 * 174.16533 * 21 20 19 23 23 C 1.53002 * 117.49765 * 248.62629 * 22 21 20 24 24 C 1.52993 * 117.50012 * 180.02562 * 22 21 20 25 25 C 1.46839 * 111.19735 * 298.26547 * 21 20 19 26 26 C 1.53036 * 109.53014 * 61.74229 * 25 21 20 27 27 H 1.09004 * 109.47203 * 310.23187 * 1 2 3 28 28 H 1.09000 * 109.47237 * 70.23324 * 1 2 3 29 29 H 1.08996 * 109.47165 * 190.23016 * 1 2 3 30 30 H 1.08993 * 109.47361 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47283 * 299.99903 * 3 2 1 32 32 H 1.09000 * 109.47324 * 60.00031 * 3 2 1 33 33 H 0.96993 * 119.99598 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46886 * 179.97438 * 12 2 1 35 35 H 1.08995 * 109.47265 * 60.00440 * 12 2 1 36 36 H 0.96997 * 120.00073 * 245.00197 * 16 13 12 37 37 H 1.09004 * 109.47104 * 45.00126 * 17 16 13 38 38 H 1.09005 * 109.47670 * 284.99975 * 17 16 13 39 39 H 1.09003 * 109.51865 * 54.87589 * 18 17 16 40 40 H 1.08999 * 109.49019 * 62.49373 * 19 18 17 41 41 H 1.08997 * 109.50852 * 302.38134 * 19 18 17 42 42 H 1.08992 * 109.46362 * 299.17573 * 20 19 18 43 43 H 1.08997 * 109.46255 * 179.19251 * 20 19 18 44 44 H 1.09003 * 115.55001 * 34.32706 * 22 21 20 45 45 H 1.09002 * 117.49787 * 359.97438 * 23 22 21 46 46 H 1.08993 * 117.49764 * 145.02160 * 23 22 21 47 47 H 1.08998 * 117.50355 * 214.98115 * 24 22 21 48 48 H 1.09001 * 117.49998 * 359.97438 * 24 22 21 49 49 H 1.09003 * 109.46086 * 181.76051 * 25 21 20 50 50 H 1.09009 * 109.46388 * 301.73034 * 25 21 20 51 51 H 1.08996 * 109.49765 * 60.75561 * 26 25 21 52 52 H 1.08991 * 109.50441 * 180.84181 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6421 -1.5963 -1.1314 6 6 1.7136 -0.2293 -2.4826 7 7 1.8970 -0.9847 -3.5435 8 14 1.0212 1.4952 -2.6723 9 1 2.1371 2.4736 -2.7240 10 1 0.2328 1.5767 -3.9281 11 1 0.1434 1.8061 -1.5156 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1340 2.7304 14 8 0.0279 -0.0183 2.8543 15 8 2.0479 1.4101 2.8544 16 7 2.0541 -0.7399 3.9937 17 6 3.5025 -0.7962 4.2054 18 6 3.7923 -1.3320 5.6090 19 6 3.2764 -0.3380 6.6528 20 6 3.6228 -0.8498 8.0529 21 7 5.0784 -1.0019 8.1733 22 6 5.4586 -1.3590 9.5465 23 6 6.2215 -0.3137 10.3628 24 6 6.9475 -1.5541 9.8393 25 6 5.5906 -1.9870 7.2123 26 6 5.3028 -1.5092 5.7873 27 1 -0.3634 0.6638 0.7846 28 1 -0.3634 0.3475 -0.9671 29 1 -0.3633 -1.0113 0.1825 30 1 3.1299 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6724 -0.6465 -4.4244 34 1 3.1300 -0.7216 1.2491 35 1 1.6767 -1.7488 1.2493 36 1 1.4574 -1.2145 4.5934 37 1 3.9237 0.2041 4.1043 38 1 3.9528 -1.4567 3.4643 39 1 3.2947 -2.2926 5.7420 40 1 2.1949 -0.2401 6.5584 41 1 3.7455 0.6329 6.4939 42 1 3.1421 -1.8143 8.2162 43 1 3.2693 -0.1370 8.7978 44 1 4.7529 -1.9968 10.0789 45 1 6.4417 0.6387 9.8807 46 1 6.0179 -0.2637 11.4324 47 1 7.2218 -2.3203 10.5644 48 1 7.6450 -1.4179 9.0129 49 1 6.6663 -2.1004 7.3470 50 1 5.1006 -2.9463 7.3795 51 1 5.8037 -0.5566 5.6148 52 1 5.6698 -2.2477 5.0747 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451461830.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:58 Heat of formation + Delta-G solvation = -60.379050 kcal Electronic energy + Delta-G solvation = -29345.200800 eV Core-core repulsion = 25471.917128 eV Total energy + Delta-G solvation = -3873.283671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.41059 -38.49168 -38.20910 -37.91256 -36.91417 -35.73272 -34.03664 -32.56058 -31.69876 -28.96758 -28.14325 -27.37864 -27.04845 -24.29709 -23.49142 -22.85600 -21.67413 -21.53192 -20.78714 -20.05221 -18.79993 -18.12179 -17.73694 -17.36375 -17.06224 -16.88698 -16.09435 -15.90444 -15.67906 -15.53353 -15.07652 -15.04950 -14.94188 -14.75465 -14.45538 -14.19736 -14.15649 -14.01124 -13.59014 -13.32332 -13.22869 -13.07574 -13.02327 -12.87205 -12.70260 -12.63872 -12.56685 -12.33225 -12.09237 -11.99637 -11.85306 -11.80508 -11.72981 -11.41924 -11.35162 -11.19197 -10.98729 -10.94322 -10.68124 -10.52610 -10.24205 -9.21323 -8.34584 -6.33597 -0.62877 1.30243 1.35467 1.43051 1.88483 2.29734 2.79985 2.81651 2.93045 2.99797 3.30518 3.69021 3.76632 3.82624 3.90004 4.04195 4.08360 4.10839 4.24808 4.26761 4.28371 4.35734 4.46894 4.48965 4.53310 4.61290 4.62316 4.68236 4.70105 4.75818 4.78013 4.81290 4.82843 4.95189 4.96368 4.97629 5.02026 5.11279 5.13444 5.16966 5.24016 5.30188 5.33525 5.39377 5.52648 5.53495 5.63678 6.15301 6.16738 6.23788 6.26967 6.69309 7.30591 8.81104 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026549 B = 0.002306 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.387717 B =12137.884372 C =12526.343982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.043 3.957 3 C -0.187 4.187 4 C -0.501 4.501 5 H 0.051 0.949 6 C 0.024 3.976 7 N -0.935 5.935 8 Si 0.917 3.083 9 H -0.276 1.276 10 H -0.306 1.306 11 H -0.222 1.222 12 C -0.584 4.584 13 S 2.617 3.383 14 O -0.989 6.989 15 O -0.985 6.985 16 N -1.110 6.110 17 C 0.109 3.891 18 C -0.086 4.086 19 C -0.114 4.114 20 C 0.063 3.937 21 N -0.523 5.523 22 C -0.007 4.007 23 C -0.165 4.165 24 C -0.168 4.168 25 C 0.060 3.940 26 C -0.112 4.112 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.064 0.936 33 H 0.266 0.734 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.423 0.577 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.107 0.893 48 H 0.096 0.904 49 H 0.081 0.919 50 H 0.036 0.964 51 H 0.068 0.932 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.686 -2.851 27.670 28.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.041 3.959 3 C -0.243 4.243 4 C -0.540 4.540 5 H 0.069 0.931 6 C -0.174 4.174 7 N -0.574 5.574 8 Si 0.747 3.253 9 H -0.203 1.203 10 H -0.235 1.235 11 H -0.147 1.147 12 C -0.716 4.716 13 S 2.713 3.287 14 O -0.979 6.979 15 O -0.975 6.975 16 N -0.872 5.872 17 C -0.017 4.017 18 C -0.107 4.107 19 C -0.152 4.152 20 C -0.065 4.065 21 N -0.248 5.248 22 C -0.116 4.116 23 C -0.203 4.203 24 C -0.206 4.206 25 C -0.068 4.068 26 C -0.150 4.150 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.260 0.740 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.123 0.877 47 H 0.126 0.874 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.054 0.946 51 H 0.087 0.913 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.463 -1.550 27.360 28.402 hybrid contribution -0.518 -0.749 -0.741 1.174 sum 6.944 -2.298 26.619 27.606 Atomic orbital electron populations 1.22693 0.96891 1.02130 1.01548 1.18221 0.92720 0.92159 0.92806 1.22843 1.03007 0.97480 1.01005 1.20923 1.32311 1.11542 0.89180 0.93112 1.25683 0.95491 1.00481 0.95792 1.70054 1.50376 1.37552 0.99433 0.86713 0.79816 0.81878 0.76933 1.20269 1.23523 1.14680 1.30393 1.13072 1.13505 1.14622 1.04596 0.73501 0.74881 0.75721 1.93531 1.31176 1.87015 1.86183 1.93515 1.78442 1.39740 1.85820 1.55301 1.15415 1.70766 1.45695 1.21614 0.78728 1.02468 0.98852 1.21355 0.97259 0.99511 0.92533 1.21659 1.00993 0.99091 0.93494 1.22031 0.86946 0.99967 0.97520 1.61708 1.12797 1.47255 1.03035 1.22481 0.95414 1.03061 0.90627 1.23082 1.03302 0.94378 0.99573 1.23093 0.93237 1.00706 1.03544 1.22074 1.00568 0.92666 0.91448 1.21630 0.94406 1.02758 0.96214 0.93113 0.92593 0.91695 0.91029 0.93923 0.91729 0.92532 0.84074 0.84224 0.74044 0.90835 0.89827 0.89465 0.91075 0.91989 0.94344 0.90762 0.89070 0.89215 0.87735 0.87446 0.88601 0.90031 0.94602 0.91313 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.62 6.95 71.98 0.50 -7.12 16 2 C 0.04 1.91 0.52 -52.93 -0.03 1.89 16 3 C -0.19 -8.00 7.22 71.98 0.52 -7.48 16 4 C -0.50 -26.80 8.62 25.60 0.22 -26.58 16 5 H 0.05 2.92 7.99 -2.91 -0.02 2.90 16 6 C 0.02 1.37 5.31 84.65 0.45 1.82 16 7 N -0.94 -56.71 13.96 21.45 0.30 -56.42 16 8 Si 0.92 44.06 22.79 68.60 1.56 45.62 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 10 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 11 H -0.22 -9.77 4.67 99.48 0.46 -9.31 16 12 C -0.58 -19.88 4.99 71.98 0.36 -19.53 16 13 S 2.62 81.98 4.50 -56.49 -0.25 81.72 16 14 O -0.99 -35.91 15.93 -127.65 -2.03 -37.94 16 15 O -0.99 -35.61 15.11 -127.65 -1.93 -37.54 16 16 N -1.11 -23.84 5.46 -187.49 -1.02 -24.87 16 17 C 0.11 1.99 5.53 86.38 0.48 2.47 16 18 C -0.09 -1.27 2.28 -10.72 -0.02 -1.29 16 19 C -0.11 -1.87 5.23 30.64 0.16 -1.71 16 20 C 0.06 0.93 5.43 86.33 0.47 1.40 16 21 N -0.52 -7.85 4.80 -871.12 -4.18 -12.04 16 22 C -0.01 -0.09 5.30 44.91 0.24 0.14 16 23 C -0.17 -1.97 10.46 30.58 0.32 -1.65 16 24 C -0.17 -1.80 9.70 30.58 0.30 -1.50 16 25 C 0.06 0.78 5.34 86.33 0.46 1.25 16 26 C -0.11 -1.48 5.38 30.65 0.16 -1.32 16 27 H 0.05 2.05 6.21 -2.39 -0.01 2.03 16 28 H 0.06 2.52 4.32 -2.39 -0.01 2.51 16 29 H 0.06 2.67 8.11 -2.39 -0.02 2.65 16 30 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.04 1.89 2.28 -2.39 -0.01 1.88 16 32 H 0.06 2.57 5.46 -2.39 -0.01 2.56 16 33 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.14 4.23 8.14 -2.39 -0.02 4.21 16 35 H 0.14 4.33 8.14 -2.39 -0.02 4.31 16 36 H 0.42 7.37 8.37 -96.74 -0.81 6.56 16 37 H 0.07 1.51 7.69 -2.38 -0.02 1.49 16 38 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.15 7.64 -2.39 -0.02 1.13 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.07 1.10 8.12 -2.39 -0.02 1.08 16 44 H 0.09 1.11 8.08 -2.39 -0.02 1.09 16 45 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.10 1.09 7.23 -2.39 -0.02 1.07 16 49 H 0.08 0.99 6.68 -2.39 -0.02 0.97 16 50 H 0.04 0.46 8.14 -2.38 -0.02 0.44 16 51 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -69.94 392.01 -3.13 -73.07 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: -0.15 Total: 27.60 kcal Atomic # 6 Polarization: -63.79 SS G_CDS: 4.58 Total: -59.20 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -4.91 Total: -93.32 kcal Atomic # 8 Polarization: -71.52 SS G_CDS: -3.96 Total: -75.48 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.56 Total: 45.62 kcal Atomic # 16 Polarization: 81.98 SS G_CDS: -0.25 Total: 81.72 kcal Total: -69.94 -3.13 -73.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451461830.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.687 kcal (2) G-P(sol) polarization free energy of solvation -69.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds