Wall clock time and date at job start Wed Apr 1 2020 05:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46673 * 2 1 4 4 N 1.46499 * 109.47078 * 119.99813 * 2 1 3 5 5 C 1.34784 * 119.99971 * 300.00178 * 4 2 1 6 6 O 1.21547 * 119.99723 * 359.72726 * 5 4 2 7 7 C 1.47843 * 119.99609 * 179.97438 * 5 4 2 8 8 C 1.39574 * 120.14686 * 359.72872 * 7 5 4 9 9 C 1.37959 * 119.85259 * 179.76687 * 8 7 5 10 10 C 1.38360 * 120.14316 * 0.52808 * 9 8 7 11 11 C 1.38357 * 120.29352 * 359.69957 * 10 9 8 12 12 C 1.37955 * 120.14572 * 0.04443 * 11 10 9 13 13 C 1.50697 * 109.47070 * 239.99943 * 2 1 3 14 14 O 1.21281 * 120.00365 * 25.00120 * 13 2 1 15 15 N 1.34774 * 119.99797 * 204.99767 * 13 2 1 16 16 C 1.46497 * 120.00133 * 180.02562 * 15 13 2 17 17 H 1.09000 * 110.01411 * 325.06446 * 16 15 13 18 18 C 1.53881 * 110.03497 * 86.45415 * 16 15 13 19 19 C 1.54258 * 106.59763 * 119.28482 * 18 16 15 20 20 C 1.54887 * 104.20058 * 23.61301 * 19 18 16 21 21 H 1.08995 * 110.75846 * 80.55135 * 20 19 18 22 22 C 1.50697 * 110.76004 * 203.74464 * 20 19 18 23 23 H 1.07998 * 120.00301 * 118.54353 * 22 20 19 24 24 C 1.37878 * 119.99701 * 298.54251 * 22 20 19 25 25 N 1.31517 * 120.00252 * 359.97438 * 24 22 20 26 26 Si 1.86801 * 120.00156 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47093 * 89.99889 * 26 24 22 28 28 H 1.48498 * 109.47217 * 210.00197 * 26 24 22 29 29 H 1.48504 * 109.46981 * 330.00166 * 26 24 22 30 30 C 1.54269 * 110.03233 * 203.62277 * 16 15 13 31 31 H 1.08998 * 109.47453 * 300.00086 * 1 2 3 32 32 H 1.09005 * 109.47378 * 60.00161 * 1 2 3 33 33 H 1.09000 * 109.47321 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46768 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47401 * 299.99489 * 3 2 1 36 36 H 1.08998 * 109.47251 * 59.99790 * 3 2 1 37 37 H 0.96999 * 119.99984 * 120.00025 * 4 2 1 38 38 H 1.07997 * 120.07461 * 359.97438 * 8 7 5 39 39 H 1.07999 * 119.92852 * 180.25345 * 9 8 7 40 40 H 1.08005 * 119.85366 * 179.72507 * 10 9 8 41 41 H 1.08007 * 119.93216 * 180.02562 * 11 10 9 42 42 H 1.08001 * 120.07453 * 179.97438 * 12 11 10 43 43 H 0.97004 * 120.00212 * 0.02562 * 15 13 2 44 44 H 1.09001 * 110.02986 * 238.57178 * 18 16 15 45 45 H 1.08992 * 110.02708 * 0.02562 * 18 16 15 46 46 H 1.09000 * 110.48743 * 142.29003 * 19 18 16 47 47 H 1.08996 * 110.49166 * 264.80078 * 19 18 16 48 48 H 0.96995 * 120.00127 * 179.97438 * 25 24 22 49 49 H 1.08991 * 110.48647 * 335.78010 * 30 16 15 50 50 H 1.08997 * 110.48784 * 98.42793 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6927 -0.2301 2.4203 6 8 0.9980 0.7611 2.5318 7 6 2.1851 -0.9273 3.6274 8 6 2.9826 -2.0660 3.5029 9 6 3.4427 -2.7091 4.6334 10 6 3.1062 -2.2341 5.8885 11 6 2.3121 -1.1086 6.0190 12 6 1.8497 -0.4531 4.8966 13 6 2.0323 -0.7104 -1.2304 14 8 1.3371 -0.7705 -2.2223 15 7 3.2543 -1.2789 -1.2286 16 6 3.7429 -1.9690 -2.4249 17 1 2.9163 -2.4659 -2.9327 18 6 4.4173 -0.9638 -3.3750 19 6 5.8829 -1.4194 -3.5303 20 6 5.8486 -2.9310 -3.1943 21 1 5.5067 -3.5098 -4.0523 22 6 7.2031 -3.4073 -2.7368 23 1 7.3255 -3.8137 -1.7437 24 6 8.2860 -3.3244 -3.5861 25 7 8.1369 -2.8301 -4.7956 26 14 9.9650 -3.9156 -3.0193 27 1 10.1242 -5.3525 -3.3583 28 1 11.0232 -3.1263 -3.6993 29 1 10.0821 -3.7378 -1.5496 30 6 4.8223 -3.0004 -2.0362 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6765 1.9564 0.8899 37 1 2.5760 -1.4792 1.1072 38 1 3.2417 -2.4408 2.5238 39 1 4.0633 -3.5879 4.5384 40 1 3.4653 -2.7438 6.7704 41 1 2.0533 -0.7426 7.0016 42 1 1.2296 0.4251 4.9998 43 1 3.8103 -1.2311 -0.4352 44 1 3.9185 -0.9735 -4.3441 45 1 4.3814 0.0374 -2.9457 46 1 6.2243 -1.2638 -4.5538 47 1 6.5248 -0.8854 -2.8298 48 1 8.8988 -2.7714 -5.3930 49 1 5.2925 -2.7233 -1.0928 50 1 4.3896 -3.9986 -1.9692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452562710.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:12 Heat of formation + Delta-G solvation = -74.806060 kcal Electronic energy + Delta-G solvation = -30353.660258 eV Core-core repulsion = 26344.307033 eV Total energy + Delta-G solvation = -4009.353225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.05035 -40.80090 -39.38098 -38.73652 -36.67552 -35.36306 -33.74812 -33.49011 -31.85400 -31.23880 -29.98827 -28.94350 -28.30596 -26.13330 -25.28860 -24.21313 -23.38542 -21.88134 -21.25309 -21.05292 -20.48843 -19.72666 -18.49237 -18.22409 -17.26438 -16.84958 -16.63522 -16.53470 -16.32663 -16.06109 -15.94921 -15.55244 -15.32736 -15.18354 -14.72659 -14.50274 -14.34075 -14.15757 -14.04064 -13.66852 -13.59336 -13.41276 -13.14497 -13.02422 -12.94728 -12.79290 -12.59155 -12.51921 -12.42718 -12.41402 -12.12396 -11.99773 -11.66443 -11.37690 -11.25548 -11.06564 -10.79464 -10.62091 -10.44661 -10.41331 -10.11724 -9.92750 -9.89351 -8.08088 -6.18245 -0.13087 0.44385 1.29781 1.44406 1.45947 1.54794 1.81479 1.97758 1.98720 2.46570 2.92433 3.23341 3.40158 3.60263 3.81009 3.85808 3.93573 3.98001 4.02721 4.04569 4.19272 4.26434 4.48927 4.51953 4.59394 4.64487 4.68123 4.69563 4.74896 4.76543 4.88202 4.90968 5.00521 5.05842 5.08014 5.11169 5.17367 5.17775 5.22964 5.25334 5.36755 5.41590 5.47135 5.54543 5.62296 5.68686 5.94848 5.96980 6.01988 6.30860 6.38660 6.42995 6.93045 7.01917 7.09436 7.49869 9.00231 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010045 B = 0.002945 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.909160 B = 9506.570794 C =11761.530687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.170 3.830 3 C -0.157 4.157 4 N -0.713 5.713 5 C 0.567 3.433 6 O -0.556 6.556 7 C -0.156 4.156 8 C -0.090 4.090 9 C -0.131 4.131 10 C -0.092 4.092 11 C -0.132 4.132 12 C -0.075 4.075 13 C 0.518 3.482 14 O -0.561 6.561 15 N -0.703 5.703 16 C 0.150 3.850 17 H 0.076 0.924 18 C -0.126 4.126 19 C -0.090 4.090 20 C 0.040 3.960 21 H 0.000 1.000 22 C -0.526 4.526 23 H 0.062 0.938 24 C 0.010 3.990 25 N -0.921 5.921 26 Si 0.951 3.049 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.262 1.262 30 C -0.106 4.106 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.410 0.590 38 H 0.140 0.860 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.129 0.871 43 H 0.409 0.591 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.036 0.964 47 H 0.038 0.962 48 H 0.258 0.742 49 H 0.078 0.922 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.355 2.903 21.763 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.081 3.919 3 C -0.215 4.215 4 N -0.369 5.369 5 C 0.357 3.643 6 O -0.435 6.435 7 C -0.159 4.159 8 C -0.109 4.109 9 C -0.149 4.149 10 C -0.110 4.110 11 C -0.149 4.149 12 C -0.093 4.093 13 C 0.303 3.697 14 O -0.439 6.439 15 N -0.354 5.354 16 C 0.045 3.955 17 H 0.094 0.906 18 C -0.164 4.164 19 C -0.129 4.129 20 C 0.021 3.979 21 H 0.018 0.982 22 C -0.564 4.564 23 H 0.080 0.920 24 C -0.189 4.189 25 N -0.561 5.561 26 Si 0.778 3.222 27 H -0.205 1.205 28 H -0.216 1.216 29 H -0.187 1.187 30 C -0.144 4.144 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.248 0.752 38 H 0.158 0.842 39 H 0.168 0.832 40 H 0.171 0.829 41 H 0.168 0.832 42 H 0.147 0.853 43 H 0.247 0.753 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.067 0.933 49 H 0.096 0.904 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.243 3.590 20.928 24.511 hybrid contribution 1.541 -0.510 -0.334 1.657 sum -10.702 3.080 20.594 23.412 Atomic orbital electron populations 1.21990 0.91606 1.02870 1.03824 1.20477 0.96402 0.93680 0.81381 1.22155 1.01899 0.92946 1.04471 1.45984 1.54157 1.32287 1.04484 1.18516 0.79108 0.83432 0.83292 1.90697 1.38976 1.26847 1.86971 1.19899 1.03934 0.98932 0.93110 1.21573 0.95218 0.93535 1.00579 1.21494 1.00309 1.00988 0.92128 1.21797 0.95279 0.95255 0.98631 1.21461 0.98241 0.96139 0.99100 1.21393 0.97413 0.99203 0.91338 1.20700 0.81471 0.78215 0.89339 1.90716 1.57686 1.59536 1.35942 1.46231 1.17004 1.55205 1.17007 1.21579 0.96114 0.92455 0.85303 0.90605 1.22533 0.96686 0.98457 0.98754 1.22081 0.92970 0.98237 0.99592 1.19529 0.93118 0.92452 0.92770 0.98230 1.21492 0.94087 1.40775 1.00028 0.91968 1.25772 1.02561 0.95492 0.95028 1.70102 1.31547 1.46626 1.07786 0.85656 0.79738 0.78035 0.78815 1.20469 1.21648 1.18650 1.22570 0.94649 0.97175 0.99998 0.89941 0.90899 0.92462 0.91310 0.90848 0.89476 0.75200 0.84238 0.83192 0.82930 0.83185 0.85312 0.75345 0.93050 0.92004 0.94531 0.94332 0.93314 0.90366 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 7.93 71.98 0.57 -2.88 16 2 C 0.17 3.89 0.98 2.86 0.00 3.89 16 3 C -0.16 -3.48 8.38 71.98 0.60 -2.87 16 4 N -0.71 -13.54 4.81 -429.16 -2.06 -15.61 16 5 C 0.57 12.12 7.19 86.78 0.62 12.74 16 6 O -0.56 -14.73 12.55 -3.86 -0.05 -14.77 16 7 C -0.16 -2.79 5.87 -20.09 -0.12 -2.91 16 8 C -0.09 -1.26 9.54 22.53 0.21 -1.05 16 9 C -0.13 -1.50 10.03 22.23 0.22 -1.27 16 10 C -0.09 -0.93 10.04 22.33 0.22 -0.71 16 11 C -0.13 -1.56 10.03 22.23 0.22 -1.34 16 12 C -0.07 -1.24 9.60 22.53 0.22 -1.02 16 13 C 0.52 14.22 6.64 87.66 0.58 14.80 16 14 O -0.56 -19.71 15.77 -3.03 -0.05 -19.76 16 15 N -0.70 -17.95 4.69 -439.10 -2.06 -20.01 16 16 C 0.15 4.87 3.23 45.72 0.15 5.01 16 17 H 0.08 2.63 7.61 -2.39 -0.02 2.61 16 18 C -0.13 -4.64 6.59 31.32 0.21 -4.44 16 19 C -0.09 -4.07 5.56 31.67 0.18 -3.89 16 20 C 0.04 1.87 2.82 -10.25 -0.03 1.84 16 21 H 0.00 -0.03 8.14 -2.39 -0.02 -0.04 16 22 C -0.53 -26.95 8.54 25.60 0.22 -26.73 16 23 H 0.06 3.03 7.78 -2.91 -0.02 3.01 16 24 C 0.01 0.54 5.33 84.65 0.45 0.99 16 25 N -0.92 -52.42 12.02 21.45 0.26 -52.16 16 26 Si 0.95 41.81 29.54 68.60 2.03 43.84 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 28 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 29 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 30 C -0.11 -3.68 5.94 31.67 0.19 -3.49 16 31 H 0.08 2.02 6.17 -2.39 -0.01 2.01 16 32 H 0.07 1.79 7.87 -2.38 -0.02 1.77 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 2.05 6.15 -2.39 -0.01 2.03 16 37 H 0.41 6.15 5.28 -92.71 -0.49 5.66 16 38 H 0.14 1.45 6.41 -2.91 -0.02 1.43 16 39 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 40 H 0.15 0.73 8.06 -2.91 -0.02 0.71 16 41 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.13 2.23 7.65 -2.91 -0.02 2.21 16 43 H 0.41 8.27 7.09 -92.70 -0.66 7.61 16 44 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 45 H 0.06 2.13 7.92 -2.39 -0.02 2.11 16 46 H 0.04 1.86 7.37 -2.39 -0.02 1.84 16 47 H 0.04 1.76 8.04 -2.39 -0.02 1.74 16 48 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 49 H 0.08 2.45 7.63 -2.39 -0.02 2.44 16 50 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -67.04 399.25 2.61 -64.44 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.19 Total: 27.37 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 4.73 Total: -13.33 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -3.86 Total: -87.78 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.10 Total: -34.54 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -67.04 2.61 -64.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452562710.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.368 kcal (2) G-P(sol) polarization free energy of solvation -67.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds