Wall clock time and date at job start Wed Apr 1 2020 03:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47068 * 2 1 4 4 C 1.50700 * 109.47021 * 240.00182 * 2 1 3 5 5 H 1.08003 * 120.00004 * 240.00099 * 4 2 1 6 6 C 1.37876 * 120.00112 * 59.99505 * 4 2 1 7 7 N 1.31511 * 120.00147 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00135 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46955 * 60.00387 * 8 6 4 10 10 H 1.48497 * 109.47058 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47233 * 300.00738 * 8 6 4 12 12 C 1.53003 * 109.47277 * 120.00285 * 2 1 3 13 13 N 1.46507 * 109.46661 * 299.99992 * 12 2 1 14 14 C 1.34778 * 119.99628 * 180.02562 * 13 12 2 15 15 O 1.21285 * 119.99777 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99978 * 179.97438 * 14 13 12 17 17 N 1.46498 * 109.47177 * 179.97438 * 16 14 13 18 18 C 1.40175 * 120.61199 * 90.00031 * 17 16 14 19 19 C 1.38723 * 120.45732 * 48.86575 * 18 17 16 20 20 C 1.38181 * 119.72928 * 179.33219 * 19 18 17 21 21 C 1.38307 * 120.04913 * 359.96136 * 20 19 18 22 22 C 1.38296 * 120.24974 * 0.28553 * 21 20 19 23 23 C 1.38132 * 119.95392 * 0.07797 * 22 21 20 24 24 C 1.50497 * 120.33586 * 178.37267 * 23 22 21 25 25 C 1.53063 * 110.28486 * 104.15724 * 24 23 22 26 26 C 1.52887 * 109.50476 * 43.13943 * 25 24 23 27 27 C 1.34577 * 120.61708 * 269.72148 * 17 16 14 28 28 O 1.21286 * 119.92105 * 4.88477 * 27 17 16 29 29 H 1.08999 * 109.46914 * 299.99759 * 1 2 3 30 30 H 1.09001 * 109.47378 * 59.99719 * 1 2 3 31 31 H 1.09008 * 109.47329 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46858 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46987 * 299.99877 * 3 2 1 34 34 H 1.08998 * 109.46785 * 59.99858 * 3 2 1 35 35 H 0.96999 * 120.00513 * 179.97438 * 7 6 4 36 36 H 1.08993 * 109.47092 * 180.02562 * 12 2 1 37 37 H 1.09001 * 109.47055 * 59.99612 * 12 2 1 38 38 H 0.96997 * 119.99999 * 359.97438 * 13 12 2 39 39 H 1.09001 * 109.46814 * 59.99597 * 16 14 13 40 40 H 1.08996 * 109.46983 * 299.99672 * 16 14 13 41 41 H 1.07996 * 120.13335 * 359.35776 * 19 18 17 42 42 H 1.08001 * 119.97475 * 179.97438 * 20 19 18 43 43 H 1.08005 * 119.87636 * 180.30160 * 21 20 19 44 44 H 1.08000 * 120.01897 * 180.08299 * 22 21 20 45 45 H 1.08998 * 109.33572 * 224.40659 * 24 23 22 46 46 H 1.09000 * 109.33164 * 344.07706 * 24 23 22 47 47 H 1.08993 * 109.46681 * 163.14824 * 25 24 23 48 48 H 1.09003 * 109.46236 * 283.13961 * 25 24 23 49 49 H 1.08995 * 109.25986 * 163.57327 * 26 25 24 50 50 H 1.09006 * 109.25694 * 283.05081 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8277 -0.4192 -5.2205 11 1 3.8073 -1.1190 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5750 -1.4770 3.7807 16 6 1.3759 0.2198 4.9000 17 7 1.8641 -0.4709 6.0961 18 6 3.0873 -0.1113 6.6787 19 6 3.3782 1.2201 6.9382 20 6 4.5828 1.5564 7.5256 21 6 5.4932 0.5682 7.8535 22 6 5.2060 -0.7588 7.5905 23 6 4.0065 -1.1002 6.9966 24 6 3.7005 -2.5378 6.6732 25 6 2.7043 -3.1090 7.6853 26 6 1.5993 -2.0854 7.9472 27 6 1.1440 -1.4585 6.6592 28 8 0.1248 -1.8436 6.1263 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.7093 1.1618 -3.4844 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7490 1.2492 38 1 0.9943 0.7582 2.3564 39 1 0.2858 0.2199 4.9003 40 1 1.7393 1.2474 4.8996 41 1 2.6658 1.9905 6.6824 42 1 4.8135 2.5917 7.7290 43 1 6.4319 0.8338 8.3171 44 1 5.9190 -1.5275 7.8494 45 1 3.2735 -2.5996 5.6723 46 1 4.6215 -3.1197 6.7093 47 1 2.2653 -4.0234 7.2864 48 1 3.2219 -3.3315 8.6184 49 1 0.7543 -2.5825 8.4235 50 1 1.9792 -1.3080 8.6102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457986138.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:09 Heat of formation + Delta-G solvation = -48.657247 kcal Electronic energy + Delta-G solvation = -31055.551405 eV Core-core repulsion = 27047.332078 eV Total energy + Delta-G solvation = -4008.219327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.43178 -39.16646 -38.66900 -36.42244 -35.49678 -35.23620 -33.28412 -31.24182 -30.99447 -30.10597 -28.87484 -26.76693 -25.72687 -25.49289 -24.69346 -23.77815 -22.68933 -20.88870 -20.47125 -19.61874 -18.79286 -17.45912 -17.11123 -16.97628 -16.10934 -16.04073 -15.68311 -15.12069 -14.91859 -14.68544 -14.60572 -14.45446 -14.26992 -13.82118 -13.43689 -13.34458 -13.09375 -13.06503 -12.86706 -12.83209 -12.19564 -12.04011 -11.82132 -11.71531 -11.65425 -11.34786 -11.19333 -11.15412 -10.94276 -10.84264 -10.73246 -10.38397 -10.35092 -10.20416 -9.92464 -9.63470 -9.48274 -9.25315 -8.96370 -8.79995 -8.45721 -8.31565 -8.25947 -6.02053 -4.12199 1.02155 1.13870 2.39463 2.67653 3.00528 3.30221 3.34387 3.37934 3.48372 3.82123 4.27038 4.40358 4.46669 4.60393 4.68902 4.78442 4.87541 5.02116 5.05179 5.11105 5.13472 5.24619 5.26476 5.28874 5.40030 5.45021 5.55045 5.68148 5.72364 5.84688 5.97827 6.13260 6.21272 6.24576 6.29873 6.32979 6.44014 6.50691 6.68675 6.77790 6.82245 6.93398 7.02078 7.03097 7.20979 7.35434 7.55658 7.69149 7.92595 8.01024 8.04217 8.15067 8.38471 8.67763 8.88199 9.53554 10.99341 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.002655 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.825202 B =10543.590941 C =10900.771453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.135 3.865 13 N -0.714 5.714 14 C 0.491 3.509 15 O -0.539 6.539 16 C 0.091 3.909 17 N -0.544 5.544 18 C 0.147 3.853 19 C -0.132 4.132 20 C -0.107 4.107 21 C -0.127 4.127 22 C -0.100 4.100 23 C -0.080 4.080 24 C -0.101 4.101 25 C -0.103 4.103 26 C -0.138 4.138 27 C 0.527 3.473 28 O -0.525 6.525 29 H 0.006 0.994 30 H 0.086 0.914 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.086 0.914 34 H 0.006 0.994 35 H 0.260 0.740 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.398 0.602 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.099 0.901 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.133 1.918 24.022 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.012 3.988 13 N -0.365 5.365 14 C 0.275 3.725 15 O -0.417 6.417 16 C -0.034 4.034 17 N -0.270 5.270 18 C 0.055 3.945 19 C -0.152 4.152 20 C -0.125 4.125 21 C -0.146 4.146 22 C -0.119 4.119 23 C -0.082 4.082 24 C -0.138 4.138 25 C -0.141 4.141 26 C -0.178 4.178 27 C 0.317 3.683 28 O -0.400 6.400 29 H 0.025 0.975 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.233 0.767 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.119 0.881 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.117 0.883 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.919 1.081 23.609 24.140 hybrid contribution 0.151 0.093 -1.063 1.078 sum 5.070 1.174 22.546 23.139 Atomic orbital electron populations 1.21832 0.97713 0.99239 1.00070 1.18351 0.92819 0.92731 0.90521 1.21824 0.98525 0.98351 1.00062 1.20948 1.31550 1.12116 0.89928 0.92540 1.24872 0.94837 0.94919 0.98827 1.69788 1.36636 1.22719 1.23340 0.86632 0.79225 0.79828 0.82175 1.20265 1.21308 1.20285 1.21704 0.97980 0.95804 0.83298 1.46249 1.52615 1.31821 1.05856 1.20794 0.81258 0.85401 0.85064 1.90615 1.38238 1.26216 1.86631 1.21491 1.02143 0.96499 0.83288 1.45095 1.19170 1.36477 1.26272 1.17556 0.86120 0.93087 0.97745 1.21016 0.98438 0.94643 1.01070 1.20988 0.93330 0.99559 0.98651 1.21151 0.99653 0.92821 1.00932 1.20958 0.95813 0.96518 0.98588 1.19780 0.93262 0.95660 0.99476 1.20785 1.00324 0.91205 1.01495 1.21473 0.94827 0.97831 0.99923 1.21692 1.01251 1.00096 0.94764 1.20620 0.83074 0.78179 0.86406 1.90738 1.25334 1.59729 1.64234 0.97487 0.89583 0.95433 0.95493 0.89582 0.97530 0.92940 0.92817 0.92791 0.76742 0.86678 0.87422 0.85520 0.85589 0.85862 0.85578 0.88131 0.90479 0.90590 0.90507 0.88264 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.08 37.16 0.30 -2.69 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.51 -13.42 8.01 -34.44 -0.28 -13.70 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.89 -23.73 9.35 55.43 0.52 -23.21 16 8 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.13 2.91 4.50 -4.04 -0.02 2.89 16 13 N -0.71 -12.81 4.96 -60.29 -0.30 -13.11 16 14 C 0.49 8.65 7.90 -10.98 -0.09 8.57 16 15 O -0.54 -11.28 14.74 5.55 0.08 -11.20 16 16 C 0.09 1.22 5.82 -5.19 -0.03 1.19 16 17 N -0.54 -7.26 1.82 -114.96 -0.21 -7.47 16 18 C 0.15 1.74 4.89 -83.69 -0.41 1.33 16 19 C -0.13 -1.28 9.33 -39.42 -0.37 -1.65 16 20 C -0.11 -0.89 10.04 -39.58 -0.40 -1.29 16 21 C -0.13 -1.04 10.04 -39.53 -0.40 -1.44 16 22 C -0.10 -0.92 9.68 -39.60 -0.38 -1.30 16 23 C -0.08 -0.90 4.67 -104.59 -0.49 -1.39 16 24 C -0.10 -1.17 5.32 -27.95 -0.15 -1.32 16 25 C -0.10 -0.97 6.13 -26.76 -0.16 -1.14 16 26 C -0.14 -1.42 5.39 -28.13 -0.15 -1.57 16 27 C 0.53 7.52 6.24 -11.26 -0.07 7.45 16 28 O -0.53 -9.45 16.76 5.55 0.09 -9.36 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 30 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 31 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 34 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 35 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.40 6.33 6.16 -40.82 -0.25 6.08 16 39 H 0.12 1.47 7.52 -51.93 -0.39 1.07 16 40 H 0.11 1.09 6.95 -51.93 -0.36 0.73 16 41 H 0.13 1.02 7.41 -52.49 -0.39 0.63 16 42 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 44 H 0.13 0.90 8.02 -52.49 -0.42 0.48 16 45 H 0.10 1.59 5.80 -51.93 -0.30 1.29 16 46 H 0.08 0.76 7.97 -51.93 -0.41 0.35 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.09 0.77 7.22 -51.93 -0.37 0.40 16 LS Contribution 390.34 15.07 5.88 5.88 Total: -1.00 -31.96 390.34 -9.51 -41.47 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.59 Total: 6.88 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -2.96 Total: -5.76 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.01 Total: -43.79 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.17 Total: -20.56 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.96 -9.51 -41.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457986138.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.191 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds