Wall clock time and date at job start Wed Apr 1 2020 03:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47068 * 2 1 4 4 C 1.50700 * 109.47021 * 240.00182 * 2 1 3 5 5 H 1.08003 * 120.00004 * 240.00099 * 4 2 1 6 6 C 1.37876 * 120.00112 * 59.99505 * 4 2 1 7 7 N 1.31511 * 120.00147 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00135 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46955 * 60.00387 * 8 6 4 10 10 H 1.48497 * 109.47058 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47233 * 300.00738 * 8 6 4 12 12 C 1.53003 * 109.47277 * 120.00285 * 2 1 3 13 13 N 1.46507 * 109.46661 * 299.99992 * 12 2 1 14 14 C 1.34778 * 119.99628 * 180.02562 * 13 12 2 15 15 O 1.21285 * 119.99777 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99978 * 179.97438 * 14 13 12 17 17 N 1.46498 * 109.47177 * 179.97438 * 16 14 13 18 18 C 1.40175 * 120.61199 * 90.00031 * 17 16 14 19 19 C 1.38723 * 120.45732 * 48.86575 * 18 17 16 20 20 C 1.38181 * 119.72928 * 179.33219 * 19 18 17 21 21 C 1.38307 * 120.04913 * 359.96136 * 20 19 18 22 22 C 1.38296 * 120.24974 * 0.28553 * 21 20 19 23 23 C 1.38132 * 119.95392 * 0.07797 * 22 21 20 24 24 C 1.50497 * 120.33586 * 178.37267 * 23 22 21 25 25 C 1.53063 * 110.28486 * 104.15724 * 24 23 22 26 26 C 1.52887 * 109.50476 * 43.13943 * 25 24 23 27 27 C 1.34577 * 120.61708 * 269.72148 * 17 16 14 28 28 O 1.21286 * 119.92105 * 4.88477 * 27 17 16 29 29 H 1.08999 * 109.46914 * 299.99759 * 1 2 3 30 30 H 1.09001 * 109.47378 * 59.99719 * 1 2 3 31 31 H 1.09008 * 109.47329 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46858 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46987 * 299.99877 * 3 2 1 34 34 H 1.08998 * 109.46785 * 59.99858 * 3 2 1 35 35 H 0.96999 * 120.00513 * 179.97438 * 7 6 4 36 36 H 1.08993 * 109.47092 * 180.02562 * 12 2 1 37 37 H 1.09001 * 109.47055 * 59.99612 * 12 2 1 38 38 H 0.96997 * 119.99999 * 359.97438 * 13 12 2 39 39 H 1.09001 * 109.46814 * 59.99597 * 16 14 13 40 40 H 1.08996 * 109.46983 * 299.99672 * 16 14 13 41 41 H 1.07996 * 120.13335 * 359.35776 * 19 18 17 42 42 H 1.08001 * 119.97475 * 179.97438 * 20 19 18 43 43 H 1.08005 * 119.87636 * 180.30160 * 21 20 19 44 44 H 1.08000 * 120.01897 * 180.08299 * 22 21 20 45 45 H 1.08998 * 109.33572 * 224.40659 * 24 23 22 46 46 H 1.09000 * 109.33164 * 344.07706 * 24 23 22 47 47 H 1.08993 * 109.46681 * 163.14824 * 25 24 23 48 48 H 1.09003 * 109.46236 * 283.13961 * 25 24 23 49 49 H 1.08995 * 109.25986 * 163.57327 * 26 25 24 50 50 H 1.09006 * 109.25694 * 283.05081 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8277 -0.4192 -5.2205 11 1 3.8073 -1.1190 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5750 -1.4770 3.7807 16 6 1.3759 0.2198 4.9000 17 7 1.8641 -0.4709 6.0961 18 6 3.0873 -0.1113 6.6787 19 6 3.3782 1.2201 6.9382 20 6 4.5828 1.5564 7.5256 21 6 5.4932 0.5682 7.8535 22 6 5.2060 -0.7588 7.5905 23 6 4.0065 -1.1002 6.9966 24 6 3.7005 -2.5378 6.6732 25 6 2.7043 -3.1090 7.6853 26 6 1.5993 -2.0854 7.9472 27 6 1.1440 -1.4585 6.6592 28 8 0.1248 -1.8436 6.1263 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.7093 1.1618 -3.4844 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7490 1.2492 38 1 0.9943 0.7582 2.3564 39 1 0.2858 0.2199 4.9003 40 1 1.7393 1.2474 4.8996 41 1 2.6658 1.9905 6.6824 42 1 4.8135 2.5917 7.7290 43 1 6.4319 0.8338 8.3171 44 1 5.9190 -1.5275 7.8494 45 1 3.2735 -2.5996 5.6723 46 1 4.6215 -3.1197 6.7093 47 1 2.2653 -4.0234 7.2864 48 1 3.2219 -3.3315 8.6184 49 1 0.7543 -2.5825 8.4235 50 1 1.9792 -1.3080 8.6102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457986138.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:02 Heat of formation + Delta-G solvation = -66.497055 kcal Electronic energy + Delta-G solvation = -31056.324997 eV Core-core repulsion = 27047.332078 eV Total energy + Delta-G solvation = -4008.992919 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.38205 -40.54504 -39.65025 -38.16463 -36.44068 -36.16811 -35.02944 -32.85565 -31.95318 -30.97548 -29.92941 -27.81845 -27.58950 -27.35176 -26.28669 -24.68699 -23.48143 -21.86572 -21.66280 -20.72570 -20.48870 -18.72229 -18.18624 -18.00432 -17.73522 -17.01781 -16.83729 -16.53186 -16.39927 -16.27090 -15.58173 -15.35397 -15.20526 -14.91739 -14.88361 -14.64472 -14.52942 -14.17819 -14.04492 -13.98747 -13.64006 -13.30195 -13.11470 -13.04382 -12.68585 -12.66013 -12.57812 -12.54505 -12.37153 -12.27163 -12.15805 -11.97267 -11.77164 -11.51589 -11.39600 -11.28914 -11.04493 -10.75305 -10.49250 -10.42128 -9.98782 -9.68334 -9.14242 -8.04684 -6.20783 0.27692 0.45413 1.33380 1.41954 1.43013 1.49877 1.61094 1.73010 2.35233 2.49611 2.81916 3.18636 3.40559 3.70331 3.75999 3.86953 3.90199 4.08378 4.15116 4.18323 4.28490 4.37744 4.39523 4.45447 4.46893 4.51737 4.64791 4.68159 4.70647 4.78939 4.93169 4.95180 4.99221 5.02875 5.08194 5.11725 5.16466 5.17609 5.28357 5.36294 5.47622 5.56097 5.63212 5.64093 5.64810 5.68921 5.96991 6.12363 6.18745 6.28994 6.40820 6.59484 6.82717 6.92863 7.26707 7.46855 8.94080 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.002655 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.825202 B =10543.590941 C =10900.771453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.053 3.947 3 C -0.119 4.119 4 C -0.533 4.533 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.276 1.276 12 C 0.153 3.847 13 N -0.708 5.708 14 C 0.486 3.514 15 O -0.576 6.576 16 C 0.096 3.904 17 N -0.543 5.543 18 C 0.118 3.882 19 C -0.135 4.135 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.104 4.104 23 C -0.097 4.097 24 C -0.100 4.100 25 C -0.098 4.098 26 C -0.132 4.132 27 C 0.518 3.482 28 O -0.576 6.576 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.013 0.987 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.261 0.739 36 H 0.038 0.962 37 H 0.029 0.971 38 H 0.410 0.590 39 H 0.122 0.878 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.145 0.855 45 H 0.052 0.948 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.111 0.889 49 H 0.108 0.892 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 3.610 26.367 27.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.176 4.176 4 C -0.571 4.571 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.201 1.201 12 C 0.029 3.971 13 N -0.360 5.360 14 C 0.272 3.728 15 O -0.455 6.455 16 C -0.030 4.030 17 N -0.267 5.267 18 C 0.027 3.973 19 C -0.154 4.154 20 C -0.124 4.124 21 C -0.141 4.141 22 C -0.122 4.122 23 C -0.098 4.098 24 C -0.137 4.137 25 C -0.135 4.135 26 C -0.172 4.172 27 C 0.310 3.690 28 O -0.455 6.455 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.247 0.753 39 H 0.140 0.860 40 H 0.164 0.836 41 H 0.160 0.840 42 H 0.171 0.829 43 H 0.169 0.831 44 H 0.163 0.837 45 H 0.071 0.929 46 H 0.107 0.893 47 H 0.084 0.916 48 H 0.129 0.871 49 H 0.127 0.873 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.188 2.812 25.979 26.854 hybrid contribution -0.146 -0.423 -1.757 1.813 sum 6.043 2.389 24.222 25.078 Atomic orbital electron populations 1.21682 0.97272 0.98434 1.00500 1.18345 0.93095 0.93256 0.90105 1.21650 0.97910 0.97522 1.00564 1.21242 1.31934 1.12226 0.91727 0.94010 1.25441 0.95081 0.95590 1.00918 1.69888 1.36833 1.23185 1.23752 0.85826 0.78702 0.78752 0.79596 1.20463 1.20570 1.20129 1.21207 0.96813 0.94709 0.84366 1.46063 1.52844 1.32036 1.05096 1.21645 0.80285 0.84955 0.85906 1.90617 1.39834 1.27900 1.87187 1.21565 1.02500 0.97618 0.81301 1.45156 1.19727 1.36090 1.25764 1.17836 0.85790 0.94321 0.99402 1.21260 0.99394 0.93950 1.00836 1.21367 0.92542 1.01054 0.97476 1.21541 1.00548 0.92246 0.99760 1.21215 0.95171 0.97774 0.98083 1.19867 0.94296 0.95085 1.00599 1.20702 1.01004 0.92553 0.99438 1.21489 0.94308 0.96907 1.00827 1.21732 1.01830 1.00628 0.93002 1.21393 0.82398 0.77889 0.87354 1.90701 1.27567 1.61388 1.65887 0.94391 0.91671 0.96810 0.96272 0.91819 0.94151 0.92921 0.94404 0.95284 0.75288 0.86011 0.83617 0.83978 0.82899 0.83132 0.83744 0.92945 0.89286 0.91633 0.87112 0.87334 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.08 71.98 0.58 -4.98 16 2 C 0.05 2.49 0.50 -52.93 -0.03 2.46 16 3 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 4 C -0.53 -28.87 8.01 25.60 0.21 -28.66 16 5 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 6 C 0.03 1.59 5.15 84.65 0.44 2.02 16 7 N -0.90 -48.34 9.35 21.45 0.20 -48.14 16 8 Si 0.94 43.22 29.54 68.60 2.03 45.25 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.15 6.79 4.50 86.38 0.39 7.17 16 13 N -0.71 -25.22 4.96 -463.04 -2.30 -27.52 16 14 C 0.49 17.24 7.90 87.66 0.69 17.93 16 15 O -0.58 -25.02 14.74 -3.05 -0.04 -25.07 16 16 C 0.10 2.46 5.82 85.63 0.50 2.95 16 17 N -0.54 -14.19 1.82 -636.14 -1.16 -15.35 16 18 C 0.12 2.60 4.89 38.04 0.19 2.79 16 19 C -0.13 -2.24 9.33 22.37 0.21 -2.03 16 20 C -0.11 -1.36 10.04 22.27 0.22 -1.14 16 21 C -0.12 -1.55 10.04 22.30 0.22 -1.32 16 22 C -0.10 -1.63 9.68 22.26 0.22 -1.41 16 23 C -0.10 -2.05 4.67 -19.84 -0.09 -2.14 16 24 C -0.10 -2.31 5.32 29.81 0.16 -2.15 16 25 C -0.10 -1.78 6.13 30.58 0.19 -1.59 16 26 C -0.13 -2.61 5.39 29.69 0.16 -2.45 16 27 C 0.52 14.92 6.24 87.57 0.55 15.47 16 28 O -0.58 -21.48 16.76 -3.05 -0.05 -21.53 16 29 H 0.04 1.45 6.86 -2.39 -0.02 1.44 16 30 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 31 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 34 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 35 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 36 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.41 12.39 6.16 -92.71 -0.57 11.82 16 39 H 0.12 3.00 7.52 -2.39 -0.02 2.98 16 40 H 0.15 2.56 6.95 -2.39 -0.02 2.55 16 41 H 0.14 1.81 7.41 -2.91 -0.02 1.79 16 42 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 43 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 44 H 0.14 1.63 8.02 -2.91 -0.02 1.61 16 45 H 0.05 1.75 5.80 -2.39 -0.01 1.73 16 46 H 0.09 1.73 7.97 -2.39 -0.02 1.71 16 47 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.11 1.68 7.22 -2.38 -0.02 1.66 16 Total: -1.00 -72.79 390.34 4.43 -68.36 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.38 Total: 25.75 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 5.37 Total: -1.75 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -3.26 Total: -91.01 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -0.10 Total: -46.60 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -72.79 4.43 -68.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457986138.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.866 kcal (2) G-P(sol) polarization free energy of solvation -72.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds