Wall clock time and date at job start Wed Apr 1 2020 03:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46950 * 2 1 4 4 C 1.50695 * 109.47514 * 239.99872 * 2 1 3 5 5 H 1.08001 * 119.99938 * 237.00792 * 4 2 1 6 6 C 1.37875 * 119.99929 * 57.00193 * 4 2 1 7 7 N 1.31513 * 119.99926 * 5.54403 * 6 4 2 8 8 Si 1.86800 * 119.99999 * 185.54884 * 6 4 2 9 9 H 1.48498 * 109.47569 * 85.00115 * 8 6 4 10 10 H 1.48503 * 109.47069 * 205.00481 * 8 6 4 11 11 H 1.48501 * 109.46896 * 324.99575 * 8 6 4 12 12 C 1.53008 * 109.47149 * 119.99586 * 2 1 3 13 13 N 1.46498 * 109.46879 * 300.00410 * 12 2 1 14 14 C 1.34779 * 119.99673 * 179.97438 * 13 12 2 15 15 O 1.21277 * 120.00131 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99830 * 179.97438 * 14 13 12 17 17 H 1.08998 * 110.85461 * 62.34278 * 16 14 13 18 18 C 1.54631 * 110.97303 * 298.54668 * 16 14 13 19 19 C 1.51282 * 104.31221 * 217.01831 * 18 16 14 20 20 O 1.21281 * 124.93989 * 196.29445 * 19 18 16 21 21 N 1.34737 * 109.93557 * 16.31215 * 19 18 16 22 22 C 1.46506 * 124.29971 * 180.38628 * 21 19 18 23 23 C 1.50700 * 109.47316 * 269.96404 * 22 21 19 24 24 C 1.38229 * 119.99900 * 269.72584 * 23 22 21 25 25 C 1.38239 * 119.99933 * 179.78646 * 24 23 22 26 26 C 1.38236 * 120.00064 * 0.44041 * 25 24 23 27 27 C 1.38234 * 119.99871 * 359.81329 * 26 25 24 28 28 C 1.38238 * 120.00198 * 359.97438 * 27 26 25 29 29 C 1.46763 * 111.35286 * 0.35523 * 21 19 18 30 30 H 1.09001 * 109.47180 * 293.93235 * 1 2 3 31 31 H 1.08995 * 109.47093 * 53.93447 * 1 2 3 32 32 H 1.09002 * 109.46903 * 173.94011 * 1 2 3 33 33 H 1.08998 * 109.47199 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47407 * 299.99801 * 3 2 1 35 35 H 1.08999 * 109.47828 * 59.99814 * 3 2 1 36 36 H 0.97004 * 120.00262 * 179.97438 * 7 6 4 37 37 H 1.08998 * 109.47047 * 180.02562 * 12 2 1 38 38 H 1.09001 * 109.46760 * 59.99866 * 12 2 1 39 39 H 0.97001 * 120.00716 * 359.97438 * 13 12 2 40 40 H 1.08997 * 110.48107 * 335.76391 * 18 16 14 41 41 H 1.08998 * 110.48011 * 98.27104 * 18 16 14 42 42 H 1.09002 * 109.46962 * 29.96233 * 22 21 19 43 43 H 1.08998 * 109.47431 * 149.95957 * 22 21 19 44 44 H 1.08007 * 120.00218 * 359.97438 * 24 23 22 45 45 H 1.07999 * 120.00155 * 180.27144 * 25 24 23 46 46 H 1.08000 * 119.99930 * 179.83037 * 26 25 24 47 47 H 1.08001 * 120.00248 * 180.02562 * 27 26 25 48 48 H 1.07998 * 120.00539 * 180.02562 * 28 27 26 49 49 H 1.09005 * 110.24221 * 224.01455 * 29 21 19 50 50 H 1.08999 * 110.32350 * 102.05907 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6926 -1.5594 -1.1319 6 6 1.6492 -0.2765 -2.4817 7 7 0.9351 0.8207 -2.6071 8 14 2.1441 -1.2472 -3.9990 9 1 1.1620 -2.3363 -4.2321 10 1 2.1709 -0.3441 -5.1775 11 1 3.4933 -1.8329 -3.7936 12 6 2.0401 -0.7212 1.2494 13 7 1.5516 -0.0305 2.4454 14 6 1.8768 -0.4912 3.6696 15 8 2.5733 -1.4778 3.7809 16 6 1.3748 0.2196 4.9000 17 1 0.2860 0.1976 4.9437 18 6 1.9017 1.6724 4.9535 19 6 2.1684 1.9196 6.4220 20 8 2.3225 3.0120 6.9257 21 7 2.2093 0.7474 7.0852 22 6 2.4399 0.6219 8.5265 23 6 3.9184 0.4962 8.7896 24 6 4.5102 -0.7525 8.8259 25 6 5.8672 -0.8677 9.0629 26 6 6.6308 0.2654 9.2726 27 6 6.0381 1.5138 9.2416 28 6 4.6819 1.6293 9.0002 29 6 1.9926 -0.3869 6.1794 30 1 -0.3633 0.4169 0.9393 31 1 -0.3633 0.6050 -0.8307 32 1 -0.3633 -1.0220 -0.1085 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 0.6657 1.1262 -3.4875 37 1 3.1300 -0.7208 1.2496 38 1 1.6767 -1.7489 1.2494 39 1 0.9942 0.7583 2.3564 40 1 2.8224 1.7656 4.3776 41 1 1.1476 2.3655 4.5807 42 1 2.0544 1.5060 9.0345 43 1 1.9276 -0.2644 8.9007 44 1 3.9129 -1.6381 8.6661 45 1 6.3304 -1.8430 9.0869 46 1 7.6906 0.1753 9.4605 47 1 6.6347 2.3991 9.4050 48 1 4.2188 2.6046 8.9755 49 1 1.3035 -1.1020 6.6287 50 1 2.9405 -0.8722 5.9471 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458038386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:58 Heat of formation + Delta-G solvation = -51.963407 kcal Electronic energy + Delta-G solvation = -29932.431709 eV Core-core repulsion = 25924.069016 eV Total energy + Delta-G solvation = -4008.362693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.95371 -39.47904 -38.92125 -36.69617 -36.13353 -33.99961 -33.31979 -31.22268 -31.11467 -30.54811 -27.87392 -26.76456 -25.78219 -25.63747 -24.99510 -23.04426 -22.59922 -21.78173 -20.02210 -19.60539 -18.83152 -17.64008 -17.35170 -16.64013 -16.13936 -15.83954 -15.63745 -15.29204 -15.10622 -14.95235 -14.79574 -14.54097 -13.81905 -13.75661 -13.68702 -13.61422 -13.23131 -12.95947 -12.86878 -12.76803 -12.59150 -12.31072 -12.21940 -11.69921 -11.54764 -11.45083 -11.40761 -11.22210 -11.20237 -10.89867 -10.73186 -10.43494 -10.26902 -10.14400 -9.68258 -9.64908 -9.31948 -9.13569 -9.08481 -8.89932 -8.84165 -8.54074 -8.37575 -6.06415 -4.15468 1.02345 1.18892 2.41219 2.75655 2.83679 3.26437 3.33266 3.35872 3.51335 3.64966 4.10765 4.21382 4.37360 4.50444 4.56361 4.72050 4.75077 4.79258 4.90575 4.95608 5.17873 5.19669 5.20938 5.27310 5.35499 5.40088 5.44125 5.59938 5.73563 5.77932 5.81982 6.15079 6.22287 6.24652 6.25719 6.28992 6.34817 6.44991 6.69851 6.76094 6.76485 6.85647 6.87206 6.92887 6.96102 7.29725 7.50940 7.65988 7.91463 7.94896 7.97564 8.08895 8.33000 8.53223 8.84757 9.50320 10.95589 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.002162 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.773916 B =12949.246153 C =13432.795761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.131 3.869 13 N -0.711 5.711 14 C 0.516 3.484 15 O -0.546 6.546 16 C -0.124 4.124 17 H 0.117 0.883 18 C -0.147 4.147 19 C 0.524 3.476 20 O -0.529 6.529 21 N -0.616 5.616 22 C 0.167 3.833 23 C -0.112 4.112 24 C -0.102 4.102 25 C -0.123 4.123 26 C -0.116 4.116 27 C -0.124 4.124 28 C -0.097 4.097 29 C 0.119 3.881 30 H 0.007 0.993 31 H 0.082 0.918 32 H 0.029 0.971 33 H 0.027 0.973 34 H 0.086 0.914 35 H 0.006 0.994 36 H 0.260 0.740 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.400 0.600 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.125 0.875 49 H 0.084 0.916 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.241 0.123 22.803 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.009 3.991 13 N -0.361 5.361 14 C 0.300 3.700 15 O -0.425 6.425 16 C -0.146 4.146 17 H 0.135 0.865 18 C -0.187 4.187 19 C 0.312 3.688 20 O -0.405 6.405 21 N -0.350 5.350 22 C 0.046 3.954 23 C -0.113 4.113 24 C -0.121 4.121 25 C -0.141 4.141 26 C -0.135 4.135 27 C -0.142 4.142 28 C -0.116 4.116 29 C -0.004 4.004 30 H 0.025 0.975 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.025 0.975 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.235 0.765 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.143 0.857 49 H 0.102 0.898 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.728 0.100 23.037 23.198 hybrid contribution 0.045 -0.244 -1.030 1.060 sum 2.774 -0.144 22.007 22.181 Atomic orbital electron populations 1.21814 0.97706 1.00186 0.99009 1.18359 0.92776 0.92767 0.90564 1.21859 0.98636 0.98292 1.00102 1.20950 1.29450 1.14395 0.89919 0.92445 1.24873 0.94955 0.94756 0.98821 1.69819 1.37762 1.21350 1.23353 0.86600 0.79041 0.79921 0.82386 1.20616 1.21322 1.19974 1.21757 0.98218 0.95859 0.83280 1.46310 1.52238 1.31641 1.05887 1.19956 0.80883 0.84686 0.84481 1.90689 1.38533 1.26562 1.86706 1.22256 1.02746 0.95319 0.94291 0.86498 1.22365 1.04930 0.96238 0.95171 1.20865 0.75278 0.83631 0.89015 1.90710 1.50431 1.25370 1.73998 1.48425 1.71377 1.07580 1.07600 1.20253 0.91641 1.03706 0.79814 1.20229 0.96398 0.93585 1.01133 1.21071 0.95119 0.96834 0.99073 1.21154 0.94058 0.98695 1.00242 1.21201 0.99841 0.92739 0.99683 1.21178 0.94977 0.97602 1.00422 1.21179 0.93984 0.98473 0.97937 1.21977 1.02495 0.88171 0.87740 0.97451 0.89976 0.95157 0.95426 0.89547 0.97529 0.92961 0.92592 0.92512 0.76504 0.87099 0.87016 0.89068 0.89303 0.85998 0.85982 0.86140 0.86066 0.85687 0.89764 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.03 37.16 0.30 -2.47 16 2 C 0.06 1.24 0.50 -155.66 -0.08 1.16 16 3 C -0.13 -2.83 8.11 37.16 0.30 -2.53 16 4 C -0.51 -12.93 8.01 -34.44 -0.28 -13.20 16 5 H 0.06 1.48 7.75 -52.49 -0.41 1.07 16 6 C 0.07 1.74 5.13 -17.82 -0.09 1.65 16 7 N -0.88 -23.09 9.45 55.43 0.52 -22.56 16 8 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.13 2.60 4.50 -4.04 -0.02 2.58 16 13 N -0.71 -11.21 4.85 -60.29 -0.29 -11.51 16 14 C 0.52 7.62 7.07 -10.98 -0.08 7.55 16 15 O -0.55 -10.01 15.57 5.56 0.09 -9.92 16 16 C -0.12 -1.30 3.55 -90.14 -0.32 -1.62 16 17 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 18 C -0.15 -1.57 6.36 -26.74 -0.17 -1.74 16 19 C 0.52 6.53 8.04 -10.72 -0.09 6.44 16 20 O -0.53 -8.20 17.61 5.56 0.10 -8.10 16 21 N -0.62 -6.40 2.92 -173.69 -0.51 -6.91 16 22 C 0.17 1.48 6.06 -5.19 -0.03 1.45 16 23 C -0.11 -1.11 5.46 -104.62 -0.57 -1.69 16 24 C -0.10 -0.95 9.70 -39.58 -0.38 -1.33 16 25 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 26 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 27 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 28 C -0.10 -1.03 9.70 -39.58 -0.38 -1.41 16 29 C 0.12 1.19 6.67 -3.12 -0.02 1.17 16 30 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 31 H 0.08 1.95 6.25 -51.93 -0.32 1.63 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 2.09 6.10 -51.93 -0.32 1.77 16 35 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 36 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.40 5.65 6.16 -40.82 -0.25 5.40 16 40 H 0.11 1.29 7.89 -51.93 -0.41 0.88 16 41 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 0.82 7.88 -51.93 -0.41 0.41 16 43 H 0.09 0.57 8.08 -51.93 -0.42 0.15 16 44 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 48 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 49 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.09 1.10 7.06 -51.93 -0.37 0.73 16 LS Contribution 404.64 15.07 6.10 6.10 Total: -1.00 -30.27 404.64 -9.94 -40.20 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.82 Total: 5.90 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.10 Total: -8.54 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -0.28 Total: -40.98 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.18 Total: -18.02 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.27 -9.94 -40.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458038386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.761 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds