Wall clock time and date at job start Wed Apr 1 2020 03:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46950 * 2 1 4 4 C 1.50695 * 109.47514 * 239.99872 * 2 1 3 5 5 H 1.08001 * 119.99938 * 237.00792 * 4 2 1 6 6 C 1.37875 * 119.99929 * 57.00193 * 4 2 1 7 7 N 1.31513 * 119.99926 * 5.54403 * 6 4 2 8 8 Si 1.86800 * 119.99999 * 185.54884 * 6 4 2 9 9 H 1.48498 * 109.47569 * 85.00115 * 8 6 4 10 10 H 1.48503 * 109.47069 * 205.00481 * 8 6 4 11 11 H 1.48501 * 109.46896 * 324.99575 * 8 6 4 12 12 C 1.53008 * 109.47149 * 119.99586 * 2 1 3 13 13 N 1.46498 * 109.46879 * 300.00410 * 12 2 1 14 14 C 1.34779 * 119.99673 * 179.97438 * 13 12 2 15 15 O 1.21277 * 120.00131 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99830 * 179.97438 * 14 13 12 17 17 H 1.08998 * 110.85461 * 62.34278 * 16 14 13 18 18 C 1.54631 * 110.97303 * 298.54668 * 16 14 13 19 19 C 1.51282 * 104.31221 * 217.01831 * 18 16 14 20 20 O 1.21281 * 124.93989 * 196.29445 * 19 18 16 21 21 N 1.34737 * 109.93557 * 16.31215 * 19 18 16 22 22 C 1.46506 * 124.29971 * 180.38628 * 21 19 18 23 23 C 1.50700 * 109.47316 * 269.96404 * 22 21 19 24 24 C 1.38229 * 119.99900 * 269.72584 * 23 22 21 25 25 C 1.38239 * 119.99933 * 179.78646 * 24 23 22 26 26 C 1.38236 * 120.00064 * 0.44041 * 25 24 23 27 27 C 1.38234 * 119.99871 * 359.81329 * 26 25 24 28 28 C 1.38238 * 120.00198 * 359.97438 * 27 26 25 29 29 C 1.46763 * 111.35286 * 0.35523 * 21 19 18 30 30 H 1.09001 * 109.47180 * 293.93235 * 1 2 3 31 31 H 1.08995 * 109.47093 * 53.93447 * 1 2 3 32 32 H 1.09002 * 109.46903 * 173.94011 * 1 2 3 33 33 H 1.08998 * 109.47199 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47407 * 299.99801 * 3 2 1 35 35 H 1.08999 * 109.47828 * 59.99814 * 3 2 1 36 36 H 0.97004 * 120.00262 * 179.97438 * 7 6 4 37 37 H 1.08998 * 109.47047 * 180.02562 * 12 2 1 38 38 H 1.09001 * 109.46760 * 59.99866 * 12 2 1 39 39 H 0.97001 * 120.00716 * 359.97438 * 13 12 2 40 40 H 1.08997 * 110.48107 * 335.76391 * 18 16 14 41 41 H 1.08998 * 110.48011 * 98.27104 * 18 16 14 42 42 H 1.09002 * 109.46962 * 29.96233 * 22 21 19 43 43 H 1.08998 * 109.47431 * 149.95957 * 22 21 19 44 44 H 1.08007 * 120.00218 * 359.97438 * 24 23 22 45 45 H 1.07999 * 120.00155 * 180.27144 * 25 24 23 46 46 H 1.08000 * 119.99930 * 179.83037 * 26 25 24 47 47 H 1.08001 * 120.00248 * 180.02562 * 27 26 25 48 48 H 1.07998 * 120.00539 * 180.02562 * 28 27 26 49 49 H 1.09005 * 110.24221 * 224.01455 * 29 21 19 50 50 H 1.08999 * 110.32350 * 102.05907 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6926 -1.5594 -1.1319 6 6 1.6492 -0.2765 -2.4817 7 7 0.9351 0.8207 -2.6071 8 14 2.1441 -1.2472 -3.9990 9 1 1.1620 -2.3363 -4.2321 10 1 2.1709 -0.3441 -5.1775 11 1 3.4933 -1.8329 -3.7936 12 6 2.0401 -0.7212 1.2494 13 7 1.5516 -0.0305 2.4454 14 6 1.8768 -0.4912 3.6696 15 8 2.5733 -1.4778 3.7809 16 6 1.3748 0.2196 4.9000 17 1 0.2860 0.1976 4.9437 18 6 1.9017 1.6724 4.9535 19 6 2.1684 1.9196 6.4220 20 8 2.3225 3.0120 6.9257 21 7 2.2093 0.7474 7.0852 22 6 2.4399 0.6219 8.5265 23 6 3.9184 0.4962 8.7896 24 6 4.5102 -0.7525 8.8259 25 6 5.8672 -0.8677 9.0629 26 6 6.6308 0.2654 9.2726 27 6 6.0381 1.5138 9.2416 28 6 4.6819 1.6293 9.0002 29 6 1.9926 -0.3869 6.1794 30 1 -0.3633 0.4169 0.9393 31 1 -0.3633 0.6050 -0.8307 32 1 -0.3633 -1.0220 -0.1085 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 0.6657 1.1262 -3.4875 37 1 3.1300 -0.7208 1.2496 38 1 1.6767 -1.7489 1.2494 39 1 0.9942 0.7583 2.3564 40 1 2.8224 1.7656 4.3776 41 1 1.1476 2.3655 4.5807 42 1 2.0544 1.5060 9.0345 43 1 1.9276 -0.2644 8.9007 44 1 3.9129 -1.6381 8.6661 45 1 6.3304 -1.8430 9.0869 46 1 7.6906 0.1753 9.4605 47 1 6.6347 2.3991 9.4050 48 1 4.2188 2.6046 8.9755 49 1 1.3035 -1.1020 6.6287 50 1 2.9405 -0.8722 5.9471 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458038386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:56 Heat of formation + Delta-G solvation = -68.099698 kcal Electronic energy + Delta-G solvation = -29933.131431 eV Core-core repulsion = 25924.069016 eV Total energy + Delta-G solvation = -4009.062415 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.90118 -40.51269 -39.83763 -38.19208 -37.26670 -35.08191 -34.65017 -32.74753 -31.81320 -31.58682 -28.78013 -27.76182 -27.52745 -27.28144 -26.49724 -24.02713 -23.40693 -22.51480 -21.21030 -20.63728 -20.39307 -18.75865 -18.15770 -17.77381 -17.42745 -16.99889 -16.65888 -16.58423 -16.27899 -16.09999 -15.84093 -15.73691 -14.95995 -14.83770 -14.64763 -14.55350 -14.50778 -14.30696 -14.01091 -13.83823 -13.67140 -13.47006 -13.19909 -13.05395 -13.00730 -12.68271 -12.59920 -12.48465 -12.38645 -12.20576 -12.13725 -12.12173 -11.88597 -11.44580 -11.28346 -11.12836 -10.75640 -10.63930 -10.37171 -9.92883 -9.85790 -9.83781 -9.69333 -8.01496 -6.15543 0.30768 0.46875 1.43278 1.46458 1.47044 1.53179 1.64594 1.94063 2.32490 2.50243 2.92031 3.20799 3.22848 3.35753 3.79358 3.83070 3.84409 3.94617 4.12276 4.21467 4.25349 4.28507 4.47747 4.50226 4.55836 4.56226 4.63007 4.68177 4.71033 4.76184 4.80473 4.95786 5.04788 5.06388 5.09621 5.12093 5.13872 5.23299 5.39838 5.45649 5.52915 5.58753 5.61379 5.62484 5.69992 5.71527 6.02089 6.07791 6.18273 6.24958 6.45467 6.67517 6.89218 7.05981 7.31346 7.51922 8.97643 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.002162 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.773916 B =12949.246153 C =13432.795761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.941 3.059 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.277 1.277 12 C 0.148 3.852 13 N -0.706 5.706 14 C 0.519 3.481 15 O -0.582 6.582 16 C -0.109 4.109 17 H 0.153 0.847 18 C -0.143 4.143 19 C 0.518 3.482 20 O -0.566 6.566 21 N -0.608 5.608 22 C 0.164 3.836 23 C -0.122 4.122 24 C -0.109 4.109 25 C -0.132 4.132 26 C -0.124 4.124 27 C -0.136 4.136 28 C -0.118 4.118 29 C 0.121 3.879 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.019 0.981 33 H 0.016 0.984 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.259 0.741 37 H 0.037 0.963 38 H 0.043 0.957 39 H 0.410 0.590 40 H 0.100 0.900 41 H 0.133 0.867 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.132 0.868 48 H 0.113 0.887 49 H 0.115 0.885 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 -0.554 24.120 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.768 3.232 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.024 3.976 13 N -0.357 5.357 14 C 0.305 3.695 15 O -0.462 6.462 16 C -0.130 4.130 17 H 0.171 0.829 18 C -0.183 4.183 19 C 0.306 3.694 20 O -0.446 6.446 21 N -0.340 5.340 22 C 0.043 3.957 23 C -0.123 4.123 24 C -0.128 4.128 25 C -0.150 4.150 26 C -0.142 4.142 27 C -0.153 4.153 28 C -0.136 4.136 29 C -0.002 4.002 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.248 0.752 40 H 0.118 0.882 41 H 0.151 0.849 42 H 0.104 0.896 43 H 0.138 0.862 44 H 0.158 0.842 45 H 0.159 0.841 46 H 0.158 0.842 47 H 0.150 0.850 48 H 0.131 0.869 49 H 0.133 0.867 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.908 -0.585 24.371 24.453 hybrid contribution 0.368 -0.066 -1.395 1.445 sum 2.276 -0.650 22.976 23.097 Atomic orbital electron populations 1.21653 0.96926 0.99261 0.99881 1.18354 0.93327 0.92892 0.90401 1.21702 0.97839 0.97988 1.00449 1.21274 1.29398 1.14373 0.91687 0.93756 1.25425 0.95270 0.95535 1.00851 1.69926 1.38232 1.21940 1.23572 0.85839 0.78523 0.78873 0.79947 1.20388 1.21120 1.20188 1.21248 0.96953 0.95236 0.84121 1.46113 1.52558 1.31837 1.05216 1.20590 0.79722 0.84108 0.85034 1.90685 1.39952 1.28362 1.87216 1.22213 1.04596 0.94274 0.91918 0.82898 1.22369 1.05150 0.96822 0.94008 1.21142 0.74904 0.83583 0.89725 1.90694 1.52299 1.26807 1.74761 1.48487 1.70215 1.07084 1.08251 1.20432 0.91371 1.04942 0.78907 1.20381 0.96961 0.93679 1.01301 1.21334 0.95582 0.97130 0.98718 1.21496 0.94215 0.99627 0.99623 1.21500 1.00985 0.92469 0.99225 1.21408 0.94881 0.98608 1.00452 1.21252 0.94731 0.98387 0.99255 1.22014 1.02263 0.88240 0.87668 0.93870 0.92417 0.96208 0.96516 0.92129 0.94150 0.93124 0.94448 0.93878 0.75210 0.88176 0.84927 0.89554 0.86244 0.84233 0.84091 0.84186 0.84963 0.86929 0.86707 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 8.03 71.98 0.58 -4.39 16 2 C 0.05 2.22 0.50 -52.93 -0.03 2.20 16 3 C -0.12 -5.17 8.11 71.98 0.58 -4.59 16 4 C -0.53 -27.11 8.01 25.60 0.20 -26.91 16 5 H 0.04 2.33 7.75 -2.91 -0.02 2.30 16 6 C 0.03 1.51 5.13 84.65 0.43 1.94 16 7 N -0.90 -47.04 9.45 21.45 0.20 -46.84 16 8 Si 0.94 41.92 29.54 68.60 2.03 43.95 16 9 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 12 C 0.15 5.79 4.50 86.38 0.39 6.17 16 13 N -0.71 -20.79 4.85 -463.05 -2.25 -23.04 16 14 C 0.52 14.21 7.07 87.66 0.62 14.83 16 15 O -0.58 -20.60 15.57 -3.02 -0.05 -20.65 16 16 C -0.11 -1.92 3.55 -10.48 -0.04 -1.96 16 17 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 18 C -0.14 -2.73 6.36 30.59 0.19 -2.53 16 19 C 0.52 12.14 8.04 87.85 0.71 12.85 16 20 O -0.57 -17.37 17.61 -3.03 -0.05 -17.43 16 21 N -0.61 -11.37 2.92 -821.83 -2.40 -13.78 16 22 C 0.16 2.62 6.06 85.63 0.52 3.14 16 23 C -0.12 -2.31 5.46 -19.87 -0.11 -2.42 16 24 C -0.11 -1.84 9.70 22.27 0.22 -1.62 16 25 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 26 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 27 C -0.14 -2.57 10.05 22.27 0.22 -2.34 16 28 C -0.12 -2.50 9.70 22.27 0.22 -2.29 16 29 C 0.12 2.06 6.67 86.83 0.58 2.64 16 30 H 0.04 1.44 6.71 -2.39 -0.02 1.42 16 31 H 0.06 2.70 6.25 -2.39 -0.01 2.69 16 32 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 2.91 6.10 -2.39 -0.01 2.90 16 35 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 36 H 0.26 13.16 8.31 -92.71 -0.77 12.39 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.41 10.26 6.16 -92.71 -0.57 9.69 16 40 H 0.10 2.18 7.89 -2.39 -0.02 2.16 16 41 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.09 1.48 7.88 -2.39 -0.02 1.46 16 43 H 0.12 1.15 8.08 -2.39 -0.02 1.13 16 44 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 45 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 46 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 47 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 48 H 0.11 2.59 8.06 -2.91 -0.02 2.57 16 49 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 50 H 0.07 1.58 7.06 -2.39 -0.02 1.56 16 Total: -1.00 -66.87 404.64 3.59 -63.29 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.37 Total: 23.57 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 5.74 Total: -9.07 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -4.45 Total: -83.65 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -0.10 Total: -38.08 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -66.87 3.59 -63.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458038386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.814 kcal (2) G-P(sol) polarization free energy of solvation -66.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds