Wall clock time and date at job start Wed Apr 1 2020 03:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47472 * 2 1 4 4 C 1.53004 * 109.47238 * 174.93548 * 3 2 1 5 5 H 1.08994 * 109.62416 * 298.09516 * 4 3 2 6 6 C 1.53236 * 109.63055 * 58.48665 * 4 3 2 7 7 N 1.46953 * 109.30907 * 173.33970 * 6 4 3 8 8 C 1.46901 * 111.44302 * 297.18111 * 7 6 4 9 9 C 1.53241 * 109.33693 * 63.02295 * 8 7 6 10 10 N 1.47077 * 108.52017 * 306.17102 * 9 8 7 11 11 C 1.34782 * 120.87802 * 231.16658 * 10 9 8 12 12 O 1.21728 * 119.99622 * 185.35666 * 11 10 9 13 13 C 1.46252 * 120.00088 * 5.35138 * 11 10 9 14 14 C 1.35018 * 120.00106 * 174.80704 * 13 11 10 15 15 C 1.46964 * 120.00292 * 180.02562 * 14 13 11 16 16 C 1.40026 * 120.09719 * 359.71955 * 15 14 13 17 17 C 1.37593 * 119.89118 * 179.69604 * 16 15 14 18 18 C 1.39179 * 120.10444 * 0.60786 * 17 16 15 19 19 O 1.35578 * 119.89569 * 179.69284 * 18 17 16 20 20 C 1.34781 * 116.99222 * 185.78223 * 19 18 17 21 21 H 1.08003 * 120.00669 * 5.42187 * 20 19 18 22 22 C 1.38724 * 119.99409 * 185.43017 * 20 19 18 23 23 N 1.31507 * 120.00123 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99918 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46927 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47018 * 119.99655 * 24 22 20 27 27 H 1.48498 * 109.47084 * 239.99929 * 24 22 20 28 28 C 1.39175 * 120.20195 * 359.67182 * 18 17 16 29 29 C 1.37598 * 120.10061 * 0.02562 * 28 18 17 30 30 H 1.08994 * 109.47387 * 59.99818 * 1 2 3 31 31 H 1.09005 * 109.46834 * 300.00051 * 1 2 3 32 32 H 1.09001 * 109.47464 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47482 * 120.00001 * 2 1 3 34 34 H 1.09000 * 109.47192 * 239.99646 * 2 1 3 35 35 H 1.09009 * 109.47020 * 294.92909 * 3 2 1 36 36 H 1.08997 * 109.47305 * 54.92579 * 3 2 1 37 37 H 1.09001 * 109.48871 * 293.49761 * 6 4 3 38 38 H 1.08993 * 109.49613 * 53.57553 * 6 4 3 39 39 H 1.00900 * 110.83947 * 61.34604 * 7 6 4 40 40 H 1.08993 * 109.49642 * 303.06460 * 8 7 6 41 41 H 1.08998 * 109.51123 * 182.99248 * 8 7 6 42 42 H 1.08992 * 109.62966 * 186.45846 * 9 8 7 43 43 H 1.08997 * 109.62697 * 65.87569 * 9 8 7 44 44 H 1.07994 * 119.99924 * 354.80778 * 13 11 10 45 45 H 1.08006 * 119.99722 * 0.02562 * 14 13 11 46 46 H 1.07995 * 120.04919 * 0.02562 * 16 15 14 47 47 H 1.08005 * 119.94820 * 180.27534 * 17 16 15 48 48 H 0.97004 * 119.99656 * 180.02562 * 23 22 20 49 49 H 1.07997 * 119.94558 * 180.02562 * 28 18 17 50 50 H 1.08000 * 120.04771 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.4443 0.1273 5 1 3.8535 0.9881 1.0742 6 6 4.1792 0.6546 -1.0332 7 7 5.6416 0.7937 -0.9952 8 6 6.0533 2.1911 -1.1843 9 6 5.5154 3.0396 -0.0271 10 7 4.0635 2.8269 0.0726 11 6 3.2125 3.8714 0.1131 12 8 2.0238 3.6812 0.2936 13 6 3.7174 5.2330 -0.0598 14 6 2.8548 6.2698 -0.1242 15 6 3.3621 7.6381 -0.2985 16 6 4.7399 7.8696 -0.3920 17 6 5.2099 9.1516 -0.5614 18 6 4.3188 10.2188 -0.6271 19 8 4.7869 11.4810 -0.7878 20 6 3.8851 12.4806 -0.7238 21 1 2.8588 12.2664 -0.4647 22 6 4.2753 13.7847 -0.9911 23 7 5.5250 14.0457 -1.3064 24 14 3.0253 15.1702 -0.9032 25 1 1.6984 14.6169 -0.5310 26 1 3.4538 16.1594 0.1181 27 1 2.9299 15.8356 -2.2274 28 6 2.9489 9.9940 -0.5288 29 6 2.4694 8.7147 -0.3655 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.7527 1.9294 -0.9320 36 1 1.6044 1.9819 0.8410 37 1 3.9081 -0.3972 -0.9413 38 1 3.8037 1.0460 -1.9786 39 1 6.0156 0.4196 -0.1360 40 1 5.6516 2.5644 -2.1262 41 1 7.1414 2.2507 -1.2038 42 1 5.7188 4.0928 -0.2199 43 1 5.9946 2.7355 0.9035 44 1 4.7801 5.4093 -0.1358 45 1 1.7920 6.0935 -0.0478 46 1 5.4322 7.0425 -0.3366 47 1 6.2722 9.3307 -0.6380 48 1 5.7979 14.9577 -1.4929 49 1 2.2612 10.8251 -0.5807 50 1 1.4061 8.5413 -0.2889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493609007.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:39 Heat of formation + Delta-G solvation = -10.018168 kcal Electronic energy + Delta-G solvation = -29169.473967 eV Core-core repulsion = 25162.930156 eV Total energy + Delta-G solvation = -4006.543811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.70366 -39.21836 -37.90947 -36.89981 -35.49281 -33.74484 -33.20180 -32.33478 -31.32367 -30.46054 -28.51318 -27.41911 -25.73986 -25.41752 -24.09912 -22.81703 -22.29531 -21.73726 -21.13773 -20.11746 -18.81852 -18.05903 -17.32806 -17.05138 -16.26454 -16.05245 -15.41188 -15.24099 -14.95615 -14.77739 -14.56961 -14.39743 -14.04690 -13.98354 -13.84875 -13.63170 -13.48855 -13.31313 -13.03529 -12.79129 -12.61517 -12.45855 -12.01537 -11.86625 -11.81441 -11.77658 -11.61072 -11.43861 -11.33731 -11.16512 -11.06908 -11.01795 -10.73272 -10.65247 -10.54471 -9.64927 -9.59604 -9.53332 -8.99922 -8.89561 -8.41485 -8.30329 -7.14410 -6.68169 -4.22714 1.03240 2.10369 2.51445 2.80459 3.01700 3.02794 3.08695 3.51481 3.79803 3.84954 4.46726 4.47617 4.49574 4.70745 4.73287 4.78997 4.90387 4.91500 4.93414 4.94205 5.03166 5.04611 5.20827 5.28779 5.35511 5.41460 5.50166 5.56301 5.58656 5.62530 5.64312 5.69883 5.72903 5.74896 5.98312 5.99690 6.09036 6.17507 6.18903 6.42697 6.46702 6.50525 6.57221 6.61465 6.76071 6.89019 6.93442 7.09451 7.20579 7.24044 7.37545 7.60842 7.77259 8.28583 8.76789 9.43649 10.48485 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.001855 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.711246 B =15091.878663 C =16232.760611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C -0.110 4.110 4 C 0.112 3.888 5 H 0.066 0.934 6 C 0.046 3.954 7 N -0.686 5.686 8 C 0.042 3.958 9 C 0.068 3.932 10 N -0.615 5.615 11 C 0.560 3.440 12 O -0.548 6.548 13 C -0.288 4.288 14 C 0.040 3.960 15 C -0.200 4.200 16 C -0.043 4.043 17 C -0.199 4.199 18 C 0.167 3.833 19 O -0.162 6.162 20 C -0.392 4.392 21 H 0.098 0.902 22 C 0.041 3.959 23 N -0.851 5.851 24 Si 0.945 3.055 25 H -0.264 1.264 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.242 4.242 29 C -0.035 4.035 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.340 0.660 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.116 0.884 47 H 0.121 0.879 48 H 0.274 0.726 49 H 0.131 0.869 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 -23.670 2.173 23.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.148 4.148 4 C 0.007 3.993 5 H 0.083 0.917 6 C -0.084 4.084 7 N -0.313 5.313 8 C -0.089 4.089 9 C -0.057 4.057 10 N -0.349 5.349 11 C 0.355 3.645 12 O -0.429 6.429 13 C -0.309 4.309 14 C 0.021 3.979 15 C -0.201 4.201 16 C -0.061 4.061 17 C -0.219 4.219 18 C 0.110 3.890 19 O -0.063 6.063 20 C -0.468 4.468 21 H 0.115 0.885 22 C -0.165 4.165 23 N -0.483 5.483 24 Si 0.769 3.231 25 H -0.188 1.188 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.261 4.261 29 C -0.053 4.053 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.158 0.842 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.084 0.916 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.134 0.866 47 H 0.139 0.861 48 H 0.084 0.916 49 H 0.149 0.851 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.001 -23.599 1.477 23.730 hybrid contribution -0.652 1.135 0.892 1.584 sum -2.653 -22.464 2.369 22.744 Atomic orbital electron populations 1.21701 0.95710 1.01037 1.02100 1.21714 0.96330 0.97583 1.01313 1.22134 0.92016 0.95250 1.05402 1.22027 0.96418 0.82145 0.98710 0.91653 1.22571 0.87180 1.00373 0.98285 1.60630 1.10246 1.18382 1.42076 1.22442 1.00868 0.87324 0.98248 1.22566 0.80648 1.02998 0.99501 1.48002 1.06555 1.05661 1.74692 1.18381 0.85475 0.85190 0.75470 1.90773 1.16282 1.85302 1.50541 1.22552 1.00345 0.91533 1.16490 1.22289 0.99172 0.90914 0.85562 1.18456 0.93413 0.91975 1.16214 1.20846 0.94087 0.95434 0.95714 1.20140 0.99038 0.90908 1.11781 1.19627 0.91959 0.86078 0.91323 1.83923 1.36774 1.10598 1.74968 1.21523 0.92203 0.84573 1.48480 0.88501 1.25408 0.97416 0.97869 0.95816 1.70022 1.15820 1.21393 1.41113 0.85582 0.79369 0.79645 0.78519 1.18845 1.19887 1.19896 1.21109 0.95429 0.97474 1.12070 1.20986 0.98192 0.91765 0.94349 0.92758 0.92705 0.93126 0.92494 0.92339 0.91400 0.88332 0.89418 0.90432 0.84229 0.90171 0.89292 0.88372 0.91566 0.85831 0.85989 0.86607 0.86120 0.91612 0.85102 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.15 0.37 -0.87 16 2 C -0.13 -1.08 5.40 -26.74 -0.14 -1.22 16 3 C -0.11 -1.18 3.21 -26.73 -0.09 -1.27 16 4 C 0.11 1.06 3.16 -67.49 -0.21 0.85 16 5 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 6 C 0.05 0.37 5.41 -3.67 -0.02 0.35 16 7 N -0.69 -5.13 6.85 -113.47 -0.78 -5.91 16 8 C 0.04 0.30 6.71 -3.70 -0.02 0.28 16 9 C 0.07 0.55 6.49 -3.60 -0.02 0.53 16 10 N -0.62 -6.67 3.01 -166.61 -0.50 -7.17 16 11 C 0.56 7.75 7.44 -13.04 -0.10 7.65 16 12 O -0.55 -8.86 11.94 5.16 0.06 -8.79 16 13 C -0.29 -3.91 8.75 -37.51 -0.33 -4.24 16 14 C 0.04 0.61 9.45 -37.19 -0.35 0.25 16 15 C -0.20 -3.35 5.87 -105.03 -0.62 -3.97 16 16 C -0.04 -0.71 9.40 -39.15 -0.37 -1.08 16 17 C -0.20 -3.93 9.97 -39.47 -0.39 -4.32 16 18 C 0.17 3.79 6.66 -38.88 -0.26 3.53 16 19 O -0.16 -4.35 9.74 0.72 0.01 -4.35 16 20 C -0.39 -10.35 9.44 30.91 0.29 -10.05 16 21 H 0.10 2.36 5.28 -52.48 -0.28 2.08 16 22 C 0.04 1.07 5.50 -17.51 -0.10 0.98 16 23 N -0.85 -23.65 13.67 55.48 0.76 -22.89 16 24 Si 0.94 19.40 29.55 -169.99 -5.02 14.38 16 25 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 27 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 28 C -0.24 -4.96 9.11 -39.47 -0.36 -5.32 16 29 C -0.03 -0.61 9.78 -39.15 -0.38 -0.99 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.43 6.86 -51.93 -0.36 0.07 16 35 H 0.07 0.87 7.39 -51.92 -0.38 0.48 16 36 H 0.10 1.32 6.13 -51.93 -0.32 1.00 16 37 H 0.09 0.59 6.91 -51.93 -0.36 0.24 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.34 2.09 8.83 -39.29 -0.35 1.74 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.79 5.37 -51.93 -0.28 0.51 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.12 1.46 3.89 -52.49 -0.20 1.25 16 45 H 0.12 1.82 7.53 -52.48 -0.40 1.42 16 46 H 0.12 1.57 6.16 -52.49 -0.32 1.25 16 47 H 0.12 2.26 8.06 -52.48 -0.42 1.83 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 49 H 0.13 2.67 5.69 -52.49 -0.30 2.37 16 50 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 395.48 15.07 5.96 5.96 Total: -1.00 -29.71 395.48 -9.95 -39.66 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -7.33 Total: 8.03 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -3.10 Total: -18.91 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.52 Total: -35.97 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.07 Total: -13.14 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.71 -9.95 -39.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493609007.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.638 kcal (2) G-P(sol) polarization free energy of solvation -29.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds