Wall clock time and date at job start Wed Apr 1 2020 03:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.46977 * 2 1 4 4 C 1.50704 * 109.47550 * 119.99816 * 2 1 3 5 5 H 1.07996 * 120.00205 * 119.76586 * 4 2 1 6 6 C 1.37875 * 119.99548 * 299.77188 * 4 2 1 7 7 N 1.31516 * 120.00623 * 1.15589 * 6 4 2 8 8 Si 1.86807 * 119.99677 * 181.15815 * 6 4 2 9 9 H 1.48496 * 109.47201 * 269.99902 * 8 6 4 10 10 H 1.48499 * 109.47081 * 30.00213 * 8 6 4 11 11 H 1.48510 * 109.47039 * 149.99889 * 8 6 4 12 12 C 1.53001 * 109.47633 * 239.99795 * 2 1 3 13 13 N 1.46506 * 109.46673 * 59.99696 * 12 2 1 14 14 C 1.34769 * 119.99731 * 180.02562 * 13 12 2 15 15 O 1.21284 * 120.00617 * 5.06287 * 14 13 12 16 16 C 1.50704 * 120.00149 * 185.06891 * 14 13 12 17 17 C 1.50699 * 109.60508 * 64.69141 * 16 14 13 18 18 C 1.38234 * 120.00194 * 243.81233 * 17 16 14 19 19 C 1.38232 * 120.00194 * 179.80639 * 18 17 16 20 20 C 1.38235 * 119.99689 * 0.42143 * 19 18 17 21 21 C 1.38232 * 120.00199 * 359.80539 * 20 19 18 22 22 C 1.38232 * 120.00008 * 64.07893 * 17 16 14 23 23 C 1.53354 * 109.59986 * 304.20476 * 16 14 13 24 24 C 1.53060 * 108.43655 * 307.75820 * 23 16 14 25 25 C 1.50171 * 109.89389 * 311.11429 * 24 23 16 26 26 O 1.21280 * 118.24726 * 197.60388 * 25 24 23 27 27 N 1.33360 * 123.50779 * 17.58535 * 25 24 23 28 28 C 1.45749 * 124.10677 * 357.74858 * 27 25 24 29 29 H 1.09004 * 109.47351 * 292.82405 * 1 2 3 30 30 H 1.08997 * 109.47417 * 52.83152 * 1 2 3 31 31 H 1.09007 * 109.46657 * 172.83002 * 1 2 3 32 32 H 1.09001 * 109.47519 * 187.19938 * 3 2 1 33 33 H 1.09007 * 109.47305 * 307.19480 * 3 2 1 34 34 H 1.08995 * 109.47584 * 67.19551 * 3 2 1 35 35 H 0.96998 * 119.99517 * 357.77038 * 7 6 4 36 36 H 1.08999 * 109.47588 * 179.97438 * 12 2 1 37 37 H 1.08999 * 109.46702 * 300.00121 * 12 2 1 38 38 H 0.97003 * 120.00277 * 0.02562 * 13 12 2 39 39 H 1.08006 * 119.99783 * 359.97438 * 18 17 16 40 40 H 1.07998 * 120.00427 * 180.20376 * 19 18 17 41 41 H 1.08003 * 119.99836 * 179.79187 * 20 19 18 42 42 H 1.07999 * 120.00086 * 179.97438 * 21 20 19 43 43 H 1.08008 * 119.99971 * 359.97438 * 22 17 16 44 44 H 1.09000 * 109.67195 * 67.50708 * 23 16 14 45 45 H 1.08994 * 109.67035 * 188.03913 * 23 16 14 46 46 H 1.08996 * 109.39583 * 190.98531 * 24 23 16 47 47 H 1.09002 * 109.32875 * 71.19649 * 24 23 16 48 48 H 0.97008 * 117.94680 * 177.78084 * 27 25 24 49 49 H 1.09001 * 109.30346 * 258.79029 * 28 27 25 50 50 H 1.09001 * 109.13055 * 139.30355 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6502 -1.5906 1.1314 6 6 1.7032 -0.2365 2.4827 7 7 0.9321 0.8220 2.6036 8 14 2.3526 -1.0980 4.0078 9 1 1.3940 -2.1517 4.4271 10 1 3.6676 -1.7174 3.7042 11 1 2.5125 -0.1094 5.1044 12 6 2.0401 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8769 -0.4914 -3.6694 15 8 2.4960 -1.5282 -3.7825 16 6 1.4714 0.2817 -4.8979 17 6 2.1753 1.6141 -4.9121 18 6 1.4431 2.7836 -4.8294 19 6 2.0891 4.0057 -4.8384 20 6 3.4668 4.0584 -4.9388 21 6 4.1987 2.8890 -5.0262 22 6 3.5529 1.6669 -5.0133 23 6 -0.0468 0.4981 -4.8916 24 6 -0.7283 -0.8577 -4.6915 25 6 -0.1494 -1.8658 -5.6422 26 8 -0.7752 -2.8835 -5.8508 27 7 1.0159 -1.7016 -6.2697 28 6 1.8477 -0.5108 -6.1503 29 1 -0.3634 0.3986 0.9472 30 1 -0.3634 0.6208 -0.8189 31 1 -0.3633 -1.0197 -0.1283 32 1 3.1223 1.4453 -0.1288 33 1 1.5753 1.9922 -0.8187 34 1 1.7855 1.9179 0.9473 35 1 0.6214 1.2886 1.8119 36 1 3.1300 -0.7209 -1.2494 37 1 1.6767 -1.7489 -1.2491 38 1 0.9942 0.7582 -2.3564 39 1 0.3664 2.7425 -4.7550 40 1 1.5173 4.9193 -4.7705 41 1 3.9713 5.0133 -4.9492 42 1 5.2750 2.9302 -5.1051 43 1 4.1248 0.7532 -5.0818 44 1 -0.3184 1.1693 -4.0768 45 1 -0.3599 0.9291 -5.8425 46 1 -1.7974 -0.7565 -4.8779 47 1 -0.5695 -1.1936 -3.6668 48 1 1.3293 -2.4197 -6.8417 49 1 1.7063 0.1171 -7.0300 50 1 2.8937 -0.8107 -6.0861 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582311280.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:33 Heat of formation + Delta-G solvation = -69.674535 kcal Electronic energy + Delta-G solvation = -32053.668921 eV Core-core repulsion = 28044.538216 eV Total energy + Delta-G solvation = -4009.130705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.52928 -40.44497 -39.87486 -38.64769 -37.23330 -35.50496 -34.45183 -32.78380 -32.30326 -31.73189 -29.45845 -27.94160 -27.86513 -26.69464 -25.78234 -24.83826 -23.06350 -22.78266 -21.86364 -20.76056 -20.29651 -18.91629 -18.59789 -17.74438 -17.46816 -17.26237 -16.93172 -16.81679 -16.12582 -15.75800 -15.63320 -15.55208 -15.38254 -15.00988 -14.84572 -14.64628 -14.47513 -14.39615 -14.26369 -14.08487 -13.62630 -13.48120 -13.32456 -13.21895 -12.86680 -12.76381 -12.53974 -12.49989 -12.47429 -12.43652 -11.94888 -11.92243 -11.74559 -11.71139 -11.40581 -10.99627 -10.89921 -10.42548 -10.35513 -10.17978 -10.02965 -9.79232 -9.65652 -8.37942 -6.24214 0.36183 0.52646 1.52722 1.55569 1.55972 1.61384 1.79247 2.15864 2.27417 2.60081 2.84276 3.24642 3.25614 3.41242 3.52758 3.61131 3.75427 4.07546 4.12061 4.16244 4.19636 4.27574 4.32288 4.34001 4.46771 4.50759 4.54949 4.66138 4.67844 4.72820 4.79930 4.81976 4.84603 4.87949 4.95663 4.97423 5.05600 5.15726 5.17388 5.21485 5.41481 5.58969 5.60785 5.64147 5.66643 5.72056 5.83527 6.10486 6.15978 6.24110 6.32141 6.53383 6.76917 7.10623 7.19275 7.50977 8.90143 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010475 B = 0.003946 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.434070 B = 7093.385415 C = 8674.264164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.037 3.963 3 C -0.130 4.130 4 C -0.604 4.604 5 H 0.033 0.967 6 C -0.012 4.012 7 N -0.936 5.936 8 Si 1.103 2.897 9 H -0.280 1.280 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.159 3.841 13 N -0.703 5.703 14 C 0.518 3.482 15 O -0.578 6.578 16 C -0.042 4.042 17 C -0.083 4.083 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.111 4.111 24 C -0.142 4.142 25 C 0.515 3.485 26 O -0.611 6.611 27 N -0.702 5.702 28 C 0.137 3.863 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.281 0.719 36 H 0.036 0.964 37 H 0.032 0.968 38 H 0.407 0.593 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.132 0.868 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.123 0.877 46 H 0.128 0.872 47 H 0.082 0.918 48 H 0.403 0.597 49 H 0.111 0.889 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.655 10.802 -20.202 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.037 3.963 3 C -0.188 4.188 4 C -0.642 4.642 5 H 0.051 0.949 6 C -0.213 4.213 7 N -0.577 5.577 8 Si 0.927 3.073 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.208 1.208 12 C 0.035 3.965 13 N -0.354 5.354 14 C 0.304 3.696 15 O -0.458 6.458 16 C -0.045 4.045 17 C -0.083 4.083 18 C -0.128 4.128 19 C -0.137 4.137 20 C -0.138 4.138 21 C -0.144 4.144 22 C -0.141 4.141 23 C -0.148 4.148 24 C -0.181 4.181 25 C 0.303 3.697 26 O -0.494 6.494 27 N -0.351 5.351 28 C 0.012 3.988 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.244 0.756 39 H 0.172 0.828 40 H 0.166 0.834 41 H 0.159 0.841 42 H 0.150 0.850 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.141 0.859 46 H 0.146 0.854 47 H 0.100 0.900 48 H 0.239 0.761 49 H 0.129 0.871 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.694 9.793 -18.577 21.012 hybrid contribution 0.460 -0.651 -1.296 1.522 sum 1.154 9.142 -19.873 21.906 Atomic orbital electron populations 1.21909 0.97294 0.99310 1.00799 1.18501 0.93001 0.93166 0.91668 1.21851 0.98892 0.97506 1.00533 1.22078 1.35204 1.13816 0.93126 0.94895 1.26650 0.94623 0.96597 1.03383 1.70906 1.32614 1.19325 1.34901 0.83086 0.75994 0.75055 0.73130 1.20648 1.20731 1.20814 1.21080 0.96712 0.94728 0.83946 1.45993 1.52666 1.31727 1.05033 1.20806 0.78702 0.84871 0.85207 1.90692 1.42692 1.25318 1.87122 1.20016 0.98406 0.93713 0.92403 1.19152 0.93447 0.92203 1.03537 1.21436 1.01474 0.91069 0.98854 1.21500 0.94779 0.98541 0.98884 1.21533 0.94836 0.98822 0.98586 1.21332 1.00807 0.92293 0.99973 1.21104 0.94219 0.98477 1.00297 1.22012 0.89451 0.96238 1.07085 1.21757 1.03598 0.94274 0.98515 1.20559 0.80872 0.87616 0.80648 1.90716 1.60896 1.31759 1.65988 1.45294 1.20531 1.21272 1.48034 1.21421 0.95201 0.85715 0.96418 0.93154 0.92848 0.95476 0.95400 0.93104 0.93323 0.90331 0.94586 0.94910 0.75568 0.82817 0.83426 0.84147 0.84969 0.87151 0.87406 0.85914 0.85416 0.90003 0.76087 0.87076 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 7.88 71.98 0.57 -5.13 16 2 C 0.04 1.68 0.50 -52.93 -0.03 1.65 16 3 C -0.13 -5.44 7.88 71.98 0.57 -4.87 16 4 C -0.60 -32.27 8.01 25.60 0.21 -32.06 16 5 H 0.03 1.83 7.74 -2.91 -0.02 1.81 16 6 C -0.01 -0.66 5.10 84.65 0.43 -0.23 16 7 N -0.94 -51.95 12.13 21.45 0.26 -51.69 16 8 Si 1.10 49.38 29.90 68.60 2.05 51.43 16 9 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.16 6.63 4.50 86.38 0.39 7.02 16 13 N -0.70 -22.28 4.84 -463.05 -2.24 -24.52 16 14 C 0.52 15.65 4.45 87.66 0.39 16.04 16 15 O -0.58 -22.43 15.57 -3.04 -0.05 -22.48 16 16 C -0.04 -0.82 0.49 -53.58 -0.03 -0.85 16 17 C -0.08 -1.45 4.70 -19.87 -0.09 -1.54 16 18 C -0.11 -1.49 9.04 22.27 0.20 -1.29 16 19 C -0.12 -1.54 10.05 22.27 0.22 -1.31 16 20 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 21 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 22 C -0.12 -2.41 8.96 22.27 0.20 -2.21 16 23 C -0.11 -1.63 3.46 30.73 0.11 -1.53 16 24 C -0.14 -3.11 5.51 29.70 0.16 -2.95 16 25 C 0.51 14.63 7.44 87.71 0.65 15.29 16 26 O -0.61 -22.83 17.78 -3.03 -0.05 -22.89 16 27 N -0.70 -16.26 5.08 -467.33 -2.38 -18.64 16 28 C 0.14 2.51 5.04 86.49 0.44 2.94 16 29 H 0.05 2.38 5.21 -2.38 -0.01 2.37 16 30 H 0.05 1.79 7.05 -2.39 -0.02 1.77 16 31 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.73 7.05 -2.38 -0.02 1.71 16 34 H 0.05 2.29 5.24 -2.39 -0.01 2.27 16 35 H 0.28 14.96 3.55 -92.71 -0.33 14.64 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.41 10.98 5.52 -92.71 -0.51 10.47 16 39 H 0.15 1.27 5.90 -2.91 -0.02 1.26 16 40 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 41 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.11 2.37 7.51 -2.91 -0.02 2.34 16 44 H 0.11 1.23 6.25 -2.39 -0.01 1.21 16 45 H 0.12 1.07 8.09 -2.39 -0.02 1.05 16 46 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.08 2.21 7.39 -2.39 -0.02 2.20 16 48 H 0.40 8.86 8.80 -92.70 -0.82 8.04 16 49 H 0.11 1.32 8.11 -2.39 -0.02 1.30 16 50 H 0.08 1.64 7.13 -2.39 -0.02 1.63 16 Total: -1.00 -74.25 385.15 2.52 -71.73 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.09 Total: 31.49 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 4.84 Total: -14.44 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -4.36 Total: -94.84 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -0.10 Total: -45.37 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 2.05 Total: 51.43 kcal Total: -74.25 2.52 -71.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582311280.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.059 kcal (2) G-P(sol) polarization free energy of solvation -74.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds