Wall clock time and date at job start Wed Apr 1 2020 03:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99585 * 2 1 4 4 C 1.52999 * 109.46848 * 125.00313 * 3 2 1 5 5 H 1.08996 * 109.47401 * 304.99820 * 4 3 2 6 6 C 1.52999 * 109.47024 * 184.99706 * 4 3 2 7 7 C 1.50706 * 109.47281 * 175.00001 * 6 4 3 8 8 C 1.38236 * 119.99638 * 89.99775 * 7 6 4 9 9 C 1.38239 * 119.99645 * 179.97438 * 8 7 6 10 10 C 1.38233 * 120.00004 * 0.02562 * 9 8 7 11 11 C 1.38240 * 120.00108 * 0.06771 * 10 9 8 12 12 C 1.38229 * 119.99980 * 269.98292 * 7 6 4 13 13 N 1.46507 * 109.47225 * 65.00096 * 4 3 2 14 14 C 1.34775 * 119.99598 * 275.00044 * 13 4 3 15 15 O 1.21585 * 120.00372 * 359.97438 * 14 13 4 16 16 N 1.34780 * 119.99551 * 179.97438 * 14 13 4 17 17 C 1.47023 * 125.65044 * 359.69134 * 16 14 13 18 18 C 1.54333 * 107.26219 * 178.85004 * 17 16 14 19 19 C 1.55155 * 103.02316 * 338.14014 * 18 17 16 20 20 O 1.42907 * 111.00461 * 277.23170 * 19 18 17 21 21 C 1.50696 * 111.03755 * 153.39927 * 19 18 17 22 22 H 1.08005 * 119.99916 * 272.61021 * 21 19 18 23 23 C 1.37878 * 120.00184 * 92.60611 * 21 19 18 24 24 N 1.31518 * 120.00098 * 173.51902 * 23 21 19 25 25 Si 1.86801 * 120.00121 * 353.52441 * 23 21 19 26 26 H 1.48503 * 109.47308 * 87.31798 * 25 23 21 27 27 H 1.48500 * 109.47322 * 207.32055 * 25 23 21 28 28 H 1.48502 * 109.46977 * 327.31708 * 25 23 21 29 29 C 1.47431 * 125.64387 * 179.97438 * 16 14 13 30 30 H 1.07995 * 120.00359 * 359.97438 * 1 2 3 31 31 H 1.08003 * 119.99857 * 179.97438 * 1 2 3 32 32 H 1.07992 * 119.99972 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.47402 * 5.00373 * 3 2 1 34 34 H 1.09000 * 109.46925 * 245.00151 * 3 2 1 35 35 H 1.09004 * 109.47223 * 55.00131 * 6 4 3 36 36 H 1.09002 * 109.47468 * 295.00227 * 6 4 3 37 37 H 1.07995 * 120.00408 * 359.97438 * 8 7 6 38 38 H 1.07997 * 119.99817 * 179.72555 * 9 8 7 39 39 H 1.07998 * 119.99814 * 179.97438 * 10 9 8 40 40 H 1.07991 * 119.99909 * 180.02562 * 11 10 9 41 41 H 1.07995 * 120.00188 * 359.97203 * 12 7 6 42 42 H 0.96998 * 119.99969 * 94.99249 * 13 4 3 43 43 H 1.08995 * 109.88329 * 298.39202 * 17 16 14 44 44 H 1.09002 * 109.88127 * 59.56055 * 17 16 14 45 45 H 1.09004 * 110.84778 * 219.67103 * 18 17 16 46 46 H 1.09000 * 110.51815 * 96.45559 * 18 17 16 47 47 H 0.96696 * 113.99835 * 168.39882 * 20 19 18 48 48 H 0.96995 * 119.99860 * 180.02562 * 24 23 21 49 49 H 1.08994 * 110.36967 * 322.93457 * 29 16 14 50 50 H 1.09004 * 110.36365 * 85.14978 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.4883 1.1469 2.1060 6 6 3.7091 2.7046 1.2552 7 6 4.5725 2.7745 2.4884 8 6 5.8971 2.3837 2.4278 9 6 6.6892 2.4483 3.5589 10 6 6.1566 2.9032 4.7506 11 6 4.8314 3.2922 4.8117 12 6 4.0400 3.2297 3.6801 13 7 4.0547 0.2969 1.0000 14 6 3.8093 -0.9670 1.3983 15 8 2.7420 -1.2473 1.9087 16 7 4.7473 -1.9203 1.2308 17 6 6.0722 -1.7219 0.6251 18 6 6.8055 -3.0790 0.6731 19 6 6.0660 -3.8362 1.8076 20 8 6.5742 -3.4614 3.0896 21 6 6.1543 -5.3275 1.6097 22 1 5.4202 -5.8361 1.0024 23 6 7.1724 -6.0427 2.2039 24 7 7.1787 -7.3562 2.1380 25 14 8.5428 -5.1460 3.1025 26 1 8.1408 -4.9141 4.5132 27 1 9.7783 -5.9691 3.0688 28 1 8.7987 -3.8419 2.4399 29 6 4.6122 -3.3361 1.6193 30 1 -0.5400 0.9352 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9352 -0.0004 33 1 1.3585 2.1317 0.0896 34 1 2.6212 1.4027 -0.9314 35 1 2.9466 3.4823 1.3010 36 1 4.3273 2.8536 0.3699 37 1 6.3131 2.0279 1.4969 38 1 7.7228 2.1388 3.5126 39 1 6.7753 2.9532 5.6344 40 1 4.4155 3.6479 5.7426 41 1 3.0053 3.5357 3.7272 42 1 4.9063 0.5206 0.5931 43 1 5.9619 -1.3943 -0.4085 44 1 6.6323 -0.9796 1.1938 45 1 7.8578 -2.9427 0.9226 46 1 6.6981 -3.6051 -0.2755 47 1 6.0342 -3.7669 3.8313 48 1 7.8948 -7.8593 2.5564 49 1 4.0574 -3.4219 2.5535 50 1 4.1147 -3.9002 0.8302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592033512.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:59 Heat of formation + Delta-G solvation = -30.941418 kcal Electronic energy + Delta-G solvation = -31212.358366 eV Core-core repulsion = 27204.907255 eV Total energy + Delta-G solvation = -4007.451111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.29044 -39.33310 -38.05466 -36.31940 -34.69937 -33.80126 -32.46745 -32.34102 -31.01064 -30.38252 -29.30443 -28.22523 -26.34408 -25.17848 -22.88709 -22.73107 -22.07508 -20.94295 -19.85464 -19.75635 -19.61229 -17.80548 -17.35208 -16.94595 -16.30353 -15.90002 -15.35706 -15.19957 -15.01264 -14.93753 -14.70615 -14.34848 -13.99700 -13.64782 -13.53312 -13.51534 -13.28797 -12.92980 -12.68065 -12.52098 -12.39255 -12.28033 -12.08217 -11.90640 -11.64422 -11.56929 -11.27898 -11.20703 -11.10770 -11.02118 -10.66672 -10.49736 -10.38676 -10.20513 -9.78196 -9.39285 -9.23602 -9.04041 -8.89643 -8.67699 -8.65154 -8.52573 -7.96921 -6.19507 -4.31493 1.22310 1.28915 2.48684 2.93427 3.45402 3.51509 3.56141 3.64878 3.68399 4.23850 4.49338 4.50144 4.64685 4.70043 4.88093 4.98085 5.01031 5.03839 5.13961 5.14743 5.20093 5.28502 5.34386 5.36467 5.47009 5.52279 5.53681 5.57325 5.67390 5.77465 5.86221 5.89559 5.89934 5.99440 6.10046 6.12654 6.33702 6.40174 6.44420 6.49726 6.54337 6.66615 6.68177 6.72654 6.84261 6.88164 6.96942 7.05641 7.36386 7.49569 8.12367 8.32524 8.62483 8.81513 8.95137 9.42121 10.89405 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010413 B = 0.003797 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.376659 B = 7372.829458 C = 9337.313952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.128 4.128 3 C -0.106 4.106 4 C 0.175 3.825 5 H 0.090 0.910 6 C -0.089 4.089 7 C -0.079 4.079 8 C -0.110 4.110 9 C -0.115 4.115 10 C -0.124 4.124 11 C -0.119 4.119 12 C -0.117 4.117 13 N -0.740 5.740 14 C 0.720 3.280 15 O -0.590 6.590 16 N -0.629 5.629 17 C 0.102 3.898 18 C -0.119 4.119 19 C 0.220 3.780 20 O -0.559 6.559 21 C -0.552 4.552 22 H 0.081 0.919 23 C 0.075 3.925 24 N -0.888 5.888 25 Si 0.951 3.049 26 H -0.293 1.293 27 H -0.327 1.327 28 H -0.270 1.270 29 C 0.109 3.891 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.391 0.609 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.371 0.629 48 H 0.267 0.733 49 H 0.068 0.932 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 23.450 -2.029 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.145 4.145 3 C -0.144 4.144 4 C 0.069 3.931 5 H 0.108 0.892 6 C -0.127 4.127 7 C -0.079 4.079 8 C -0.128 4.128 9 C -0.133 4.133 10 C -0.142 4.142 11 C -0.137 4.137 12 C -0.135 4.135 13 N -0.396 5.396 14 C 0.422 3.578 15 O -0.469 6.469 16 N -0.365 5.365 17 C -0.021 4.021 18 C -0.158 4.158 19 C 0.180 3.820 20 O -0.366 6.366 21 C -0.590 4.590 22 H 0.099 0.901 23 C -0.130 4.130 24 N -0.523 5.523 25 Si 0.787 3.213 26 H -0.221 1.221 27 H -0.259 1.259 28 H -0.196 1.196 29 C -0.013 4.013 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.225 0.775 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.219 0.781 48 H 0.076 0.924 49 H 0.087 0.913 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.930 23.398 -1.974 23.993 hybrid contribution 0.753 0.060 0.650 0.997 sum -4.177 23.458 -1.324 23.864 Atomic orbital electron populations 1.23647 0.95916 1.01059 1.04177 1.23004 0.95943 0.98625 0.96975 1.21266 0.98143 0.96299 0.98716 1.20720 0.88123 0.85212 0.99040 0.89160 1.20948 0.98901 0.96969 0.95870 1.19746 0.94240 0.98804 0.95101 1.20975 0.93544 0.99728 0.98567 1.21159 1.00013 0.99096 0.92999 1.21147 0.95609 0.99579 0.97882 1.21120 0.94211 1.00100 0.98248 1.21012 0.99618 1.00336 0.92528 1.45133 1.19235 1.07617 1.67596 1.15425 0.83221 0.79980 0.79174 1.90906 1.24334 1.81022 1.50646 1.47706 1.15145 1.09829 1.63862 1.22023 0.83990 0.99956 0.96131 1.22937 0.99933 0.92692 1.00199 1.20230 0.87234 0.93915 0.80663 1.86105 1.53647 1.80177 1.16718 1.21117 1.14414 0.89064 1.34372 0.90087 1.25107 0.98181 0.94757 0.94951 1.69971 1.33016 1.06128 1.43182 0.85641 0.78335 0.77768 0.79540 1.22096 1.25852 1.19608 1.22948 1.00224 0.77950 1.00203 0.89370 0.88932 0.86625 0.90880 0.90917 0.89335 0.90355 0.86517 0.86098 0.86289 0.86255 0.86207 0.77462 0.92910 0.92645 0.90284 0.89709 0.78112 0.92414 0.91326 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.62 14.32 29.01 0.42 -2.20 16 2 C -0.13 -1.71 7.94 -36.03 -0.29 -2.00 16 3 C -0.11 -1.07 5.34 -27.88 -0.15 -1.22 16 4 C 0.17 1.90 2.24 -67.93 -0.15 1.75 16 5 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 6 C -0.09 -0.72 4.89 -27.88 -0.14 -0.85 16 7 C -0.08 -0.79 4.95 -104.62 -0.52 -1.31 16 8 C -0.11 -1.15 9.10 -39.58 -0.36 -1.51 16 9 C -0.11 -1.23 10.05 -39.58 -0.40 -1.63 16 10 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 11 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 12 C -0.12 -1.18 9.70 -39.59 -0.38 -1.56 16 13 N -0.74 -9.38 4.45 -58.67 -0.26 -9.64 16 14 C 0.72 12.35 7.27 -86.92 -0.63 11.71 16 15 O -0.59 -12.00 13.78 5.29 0.07 -11.93 16 16 N -0.63 -11.10 3.33 -176.24 -0.59 -11.68 16 17 C 0.10 1.60 6.15 -3.06 -0.02 1.58 16 18 C -0.12 -2.26 5.90 -24.89 -0.15 -2.40 16 19 C 0.22 4.77 0.70 -89.64 -0.06 4.71 16 20 O -0.56 -12.11 8.52 -35.23 -0.30 -12.41 16 21 C -0.55 -14.44 8.89 -34.44 -0.31 -14.75 16 22 H 0.08 2.31 8.00 -52.48 -0.42 1.89 16 23 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 24 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 25 Si 0.95 23.17 24.93 -169.99 -4.24 18.93 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 27 H -0.33 -8.19 7.11 56.52 0.40 -7.79 16 28 H -0.27 -6.39 5.42 56.52 0.31 -6.08 16 29 C 0.11 2.21 6.07 -2.54 -0.02 2.20 16 30 H 0.09 0.91 7.84 -52.49 -0.41 0.50 16 31 H 0.09 1.17 8.06 -52.48 -0.42 0.74 16 32 H 0.12 1.92 5.70 -52.49 -0.30 1.62 16 33 H 0.07 0.61 7.79 -51.93 -0.40 0.20 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 37 H 0.12 1.04 7.57 -52.49 -0.40 0.64 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.39 4.24 6.81 -40.82 -0.28 3.97 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 1.54 6.65 -51.93 -0.35 1.19 16 46 H 0.08 1.58 8.03 -51.93 -0.42 1.16 16 47 H 0.37 7.34 8.98 45.56 0.41 7.75 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.07 1.44 8.02 -51.93 -0.42 1.02 16 50 H 0.07 1.41 7.99 -51.93 -0.41 0.99 16 LS Contribution 397.81 15.07 5.99 5.99 Total: -1.00 -32.45 397.81 -9.83 -42.28 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -7.24 Total: 12.65 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -4.04 Total: -8.82 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.07 Total: -46.70 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.23 Total: -24.34 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -4.24 Total: 18.93 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.45 -9.83 -42.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592033512.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.339 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds