Wall clock time and date at job start Wed Apr 1 2020 03:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99585 * 2 1 4 4 C 1.52999 * 109.46848 * 125.00313 * 3 2 1 5 5 H 1.08996 * 109.47401 * 304.99820 * 4 3 2 6 6 C 1.52999 * 109.47024 * 184.99706 * 4 3 2 7 7 C 1.50706 * 109.47281 * 175.00001 * 6 4 3 8 8 C 1.38236 * 119.99638 * 89.99775 * 7 6 4 9 9 C 1.38239 * 119.99645 * 179.97438 * 8 7 6 10 10 C 1.38233 * 120.00004 * 0.02562 * 9 8 7 11 11 C 1.38240 * 120.00108 * 0.06771 * 10 9 8 12 12 C 1.38229 * 119.99980 * 269.98292 * 7 6 4 13 13 N 1.46507 * 109.47225 * 65.00096 * 4 3 2 14 14 C 1.34775 * 119.99598 * 275.00044 * 13 4 3 15 15 O 1.21585 * 120.00372 * 359.97438 * 14 13 4 16 16 N 1.34780 * 119.99551 * 179.97438 * 14 13 4 17 17 C 1.47023 * 125.65044 * 359.69134 * 16 14 13 18 18 C 1.54333 * 107.26219 * 178.85004 * 17 16 14 19 19 C 1.55155 * 103.02316 * 338.14014 * 18 17 16 20 20 O 1.42907 * 111.00461 * 277.23170 * 19 18 17 21 21 C 1.50696 * 111.03755 * 153.39927 * 19 18 17 22 22 H 1.08005 * 119.99916 * 272.61021 * 21 19 18 23 23 C 1.37878 * 120.00184 * 92.60611 * 21 19 18 24 24 N 1.31518 * 120.00098 * 173.51902 * 23 21 19 25 25 Si 1.86801 * 120.00121 * 353.52441 * 23 21 19 26 26 H 1.48503 * 109.47308 * 87.31798 * 25 23 21 27 27 H 1.48500 * 109.47322 * 207.32055 * 25 23 21 28 28 H 1.48502 * 109.46977 * 327.31708 * 25 23 21 29 29 C 1.47431 * 125.64387 * 179.97438 * 16 14 13 30 30 H 1.07995 * 120.00359 * 359.97438 * 1 2 3 31 31 H 1.08003 * 119.99857 * 179.97438 * 1 2 3 32 32 H 1.07992 * 119.99972 * 180.02562 * 2 1 3 33 33 H 1.09001 * 109.47402 * 5.00373 * 3 2 1 34 34 H 1.09000 * 109.46925 * 245.00151 * 3 2 1 35 35 H 1.09004 * 109.47223 * 55.00131 * 6 4 3 36 36 H 1.09002 * 109.47468 * 295.00227 * 6 4 3 37 37 H 1.07995 * 120.00408 * 359.97438 * 8 7 6 38 38 H 1.07997 * 119.99817 * 179.72555 * 9 8 7 39 39 H 1.07998 * 119.99814 * 179.97438 * 10 9 8 40 40 H 1.07991 * 119.99909 * 180.02562 * 11 10 9 41 41 H 1.07995 * 120.00188 * 359.97203 * 12 7 6 42 42 H 0.96998 * 119.99969 * 94.99249 * 13 4 3 43 43 H 1.08995 * 109.88329 * 298.39202 * 17 16 14 44 44 H 1.09002 * 109.88127 * 59.56055 * 17 16 14 45 45 H 1.09004 * 110.84778 * 219.67103 * 18 17 16 46 46 H 1.09000 * 110.51815 * 96.45559 * 18 17 16 47 47 H 0.96696 * 113.99835 * 168.39882 * 20 19 18 48 48 H 0.96995 * 119.99860 * 180.02562 * 24 23 21 49 49 H 1.08994 * 110.36967 * 322.93457 * 29 16 14 50 50 H 1.09004 * 110.36365 * 85.14978 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.4883 1.1469 2.1060 6 6 3.7091 2.7046 1.2552 7 6 4.5725 2.7745 2.4884 8 6 5.8971 2.3837 2.4278 9 6 6.6892 2.4483 3.5589 10 6 6.1566 2.9032 4.7506 11 6 4.8314 3.2922 4.8117 12 6 4.0400 3.2297 3.6801 13 7 4.0547 0.2969 1.0000 14 6 3.8093 -0.9670 1.3983 15 8 2.7420 -1.2473 1.9087 16 7 4.7473 -1.9203 1.2308 17 6 6.0722 -1.7219 0.6251 18 6 6.8055 -3.0790 0.6731 19 6 6.0660 -3.8362 1.8076 20 8 6.5742 -3.4614 3.0896 21 6 6.1543 -5.3275 1.6097 22 1 5.4202 -5.8361 1.0024 23 6 7.1724 -6.0427 2.2039 24 7 7.1787 -7.3562 2.1380 25 14 8.5428 -5.1460 3.1025 26 1 8.1408 -4.9141 4.5132 27 1 9.7783 -5.9691 3.0688 28 1 8.7987 -3.8419 2.4399 29 6 4.6122 -3.3361 1.6193 30 1 -0.5400 0.9352 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9352 -0.0004 33 1 1.3585 2.1317 0.0896 34 1 2.6212 1.4027 -0.9314 35 1 2.9466 3.4823 1.3010 36 1 4.3273 2.8536 0.3699 37 1 6.3131 2.0279 1.4969 38 1 7.7228 2.1388 3.5126 39 1 6.7753 2.9532 5.6344 40 1 4.4155 3.6479 5.7426 41 1 3.0053 3.5357 3.7272 42 1 4.9063 0.5206 0.5931 43 1 5.9619 -1.3943 -0.4085 44 1 6.6323 -0.9796 1.1938 45 1 7.8578 -2.9427 0.9226 46 1 6.6981 -3.6051 -0.2755 47 1 6.0342 -3.7669 3.8313 48 1 7.8948 -7.8593 2.5564 49 1 4.0574 -3.4219 2.5535 50 1 4.1147 -3.9002 0.8302 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592033512.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:58 Heat of formation + Delta-G solvation = -52.089822 kcal Electronic energy + Delta-G solvation = -31213.275430 eV Core-core repulsion = 27204.907255 eV Total energy + Delta-G solvation = -4008.368175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.50445 -40.25119 -39.43366 -37.43245 -36.26747 -34.76289 -34.45727 -33.41692 -31.79160 -31.71782 -30.36877 -29.79051 -27.08823 -27.00608 -24.26243 -23.47124 -23.03942 -21.81144 -21.47336 -21.01082 -20.62280 -19.53690 -18.84350 -17.68653 -17.40554 -17.17726 -16.92082 -16.68782 -16.16133 -16.01882 -15.87195 -15.51318 -15.27006 -15.02609 -14.54191 -14.42332 -14.29553 -14.23838 -13.99033 -13.85492 -13.66631 -13.35586 -13.20418 -13.19211 -13.01324 -12.78457 -12.74962 -12.31366 -12.21834 -12.11461 -11.95356 -11.93888 -11.80111 -11.56945 -11.27612 -11.15460 -10.64168 -10.45314 -10.38813 -9.88155 -9.75810 -9.52561 -9.34178 -8.34143 -6.47765 0.48899 0.55352 1.50527 1.50797 1.52532 1.68596 1.74732 2.24462 2.45637 2.90960 2.97536 3.09536 3.49162 3.77302 3.85935 3.91555 3.99467 4.09340 4.19153 4.23519 4.27582 4.30210 4.37403 4.39951 4.43898 4.56728 4.60232 4.61394 4.69118 4.81109 4.83525 4.86514 4.95138 4.97137 5.12700 5.14120 5.19602 5.21692 5.23219 5.25278 5.39708 5.54480 5.60739 5.61439 5.68002 5.77197 5.83266 6.02181 6.04541 6.16825 6.19080 6.58100 6.88877 7.09813 7.30245 7.66134 8.79007 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010413 B = 0.003797 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.376659 B = 7372.829458 C = 9337.313952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.098 4.098 4 C 0.177 3.823 5 H 0.061 0.939 6 C -0.078 4.078 7 C -0.088 4.088 8 C -0.122 4.122 9 C -0.133 4.133 10 C -0.140 4.140 11 C -0.133 4.133 12 C -0.130 4.130 13 N -0.721 5.721 14 C 0.717 3.283 15 O -0.627 6.627 16 N -0.632 5.632 17 C 0.110 3.890 18 C -0.117 4.117 19 C 0.218 3.782 20 O -0.558 6.558 21 C -0.549 4.549 22 H 0.043 0.957 23 C 0.026 3.974 24 N -0.938 5.938 25 Si 1.011 2.989 26 H -0.289 1.289 27 H -0.337 1.337 28 H -0.253 1.253 29 C 0.120 3.880 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.404 0.596 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.377 0.623 48 H 0.267 0.733 49 H 0.053 0.947 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 27.435 -2.822 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.163 4.163 3 C -0.136 4.136 4 C 0.072 3.928 5 H 0.079 0.921 6 C -0.116 4.116 7 C -0.088 4.088 8 C -0.140 4.140 9 C -0.151 4.151 10 C -0.158 4.158 11 C -0.150 4.150 12 C -0.148 4.148 13 N -0.377 5.377 14 C 0.419 3.581 15 O -0.509 6.509 16 N -0.369 5.369 17 C -0.012 4.012 18 C -0.156 4.156 19 C 0.177 3.823 20 O -0.367 6.367 21 C -0.587 4.587 22 H 0.061 0.939 23 C -0.173 4.173 24 N -0.575 5.575 25 Si 0.844 3.156 26 H -0.216 1.216 27 H -0.269 1.269 28 H -0.178 1.178 29 C -0.004 4.004 30 H 0.133 0.867 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.241 0.759 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.226 0.774 48 H 0.076 0.924 49 H 0.072 0.928 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.452 27.449 -2.790 27.947 hybrid contribution 0.476 -1.220 0.897 1.587 sum -3.976 26.229 -1.893 26.596 Atomic orbital electron populations 1.23803 0.95819 1.01813 1.03344 1.23031 0.96413 0.98910 0.97905 1.21256 0.98258 0.95135 0.98938 1.20816 0.87900 0.85974 0.98144 0.92114 1.20944 0.99399 0.95356 0.95867 1.20008 0.94460 0.98494 0.95826 1.21253 0.93860 0.99753 0.99091 1.21409 1.00684 0.99555 0.93439 1.21405 0.96124 0.99800 0.98454 1.21408 0.94334 1.00164 0.99137 1.21330 1.00440 1.00286 0.92703 1.45031 1.20211 1.06160 1.66309 1.15579 0.82450 0.81027 0.79045 1.90884 1.25880 1.81833 1.52303 1.47615 1.16243 1.08722 1.64345 1.22086 0.82465 0.98261 0.98435 1.22839 0.99968 0.94187 0.98559 1.20111 0.88896 0.91610 0.81653 1.86064 1.53938 1.79827 1.16850 1.21361 1.12809 0.91750 1.32783 0.93880 1.25857 1.00415 0.95105 0.95969 1.70091 1.34209 1.07831 1.45408 0.84675 0.75256 0.77004 0.78637 1.21635 1.26947 1.17822 1.22532 0.98831 0.79934 0.99097 0.86658 0.90197 0.90364 0.88156 0.89175 0.86930 0.88037 0.84939 0.85398 0.85290 0.84900 0.84769 0.75928 0.89378 0.90666 0.90157 0.89821 0.77353 0.92424 0.92831 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.99 14.32 67.78 0.97 -4.01 16 2 C -0.14 -3.71 7.94 25.64 0.20 -3.51 16 3 C -0.10 -1.65 5.34 29.85 0.16 -1.49 16 4 C 0.18 3.32 2.24 44.99 0.10 3.42 16 5 H 0.06 1.55 7.58 -2.39 -0.02 1.54 16 6 C -0.08 -0.92 4.89 29.85 0.15 -0.78 16 7 C -0.09 -1.49 4.95 -19.87 -0.10 -1.59 16 8 C -0.12 -2.18 9.10 22.27 0.20 -1.97 16 9 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 10 C -0.14 -2.72 10.05 22.27 0.22 -2.49 16 11 C -0.13 -2.47 10.05 22.27 0.22 -2.24 16 12 C -0.13 -2.32 9.70 22.27 0.22 -2.10 16 13 N -0.72 -16.31 4.45 -457.81 -2.04 -18.35 16 14 C 0.72 23.74 7.27 179.05 1.30 25.04 16 15 O -0.63 -25.72 13.78 -3.98 -0.05 -25.78 16 16 N -0.63 -21.45 3.33 -829.77 -2.76 -24.21 16 17 C 0.11 3.06 6.15 86.73 0.53 3.60 16 18 C -0.12 -4.20 5.90 31.79 0.19 -4.01 16 19 C 0.22 9.36 0.70 -10.16 -0.01 9.35 16 20 O -0.56 -23.39 8.52 -148.98 -1.27 -24.66 16 21 C -0.55 -29.46 8.89 25.60 0.23 -29.23 16 22 H 0.04 2.58 8.00 -2.91 -0.02 2.56 16 23 C 0.03 1.47 5.46 84.65 0.46 1.93 16 24 N -0.94 -56.96 13.96 21.45 0.30 -56.66 16 25 Si 1.01 47.60 24.93 68.60 1.71 49.31 16 26 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 27 H -0.34 -16.36 7.11 99.48 0.71 -15.66 16 28 H -0.25 -11.12 5.42 99.48 0.54 -10.58 16 29 C 0.12 4.91 6.07 86.85 0.53 5.44 16 30 H 0.12 2.06 7.84 -2.91 -0.02 2.04 16 31 H 0.08 2.03 8.06 -2.91 -0.02 2.00 16 32 H 0.08 2.63 5.70 -2.91 -0.02 2.61 16 33 H 0.10 1.19 7.79 -2.39 -0.02 1.18 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.11 0.86 8.09 -2.38 -0.02 0.84 16 36 H 0.10 0.79 8.09 -2.39 -0.02 0.78 16 37 H 0.13 1.83 7.57 -2.91 -0.02 1.81 16 38 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 39 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 40 H 0.13 1.96 8.06 -2.92 -0.02 1.94 16 41 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.40 7.10 6.81 -92.71 -0.63 6.47 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.08 2.87 6.65 -2.38 -0.02 2.86 16 46 H 0.08 2.99 8.03 -2.39 -0.02 2.97 16 47 H 0.38 14.65 8.98 -74.06 -0.67 13.98 16 48 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 49 H 0.05 2.32 8.02 -2.39 -0.02 2.30 16 50 H 0.05 2.31 7.99 -2.39 -0.02 2.29 16 Total: -1.00 -73.60 397.81 1.17 -72.43 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: -0.52 Total: 34.93 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.80 Total: -7.03 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -4.50 Total: -99.22 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -1.32 Total: -50.43 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.71 Total: 49.31 kcal Total: -73.60 1.17 -72.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592033512.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.344 kcal (2) G-P(sol) polarization free energy of solvation -73.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds