Wall clock time and date at job start Wed Apr 1 2020 03:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 C 1.52997 * 109.47212 * 124.99896 * 3 2 1 5 5 H 1.09008 * 109.47017 * 54.99761 * 4 3 2 6 6 C 1.52994 * 109.47404 * 174.99684 * 4 3 2 7 7 C 1.50701 * 109.47248 * 184.99754 * 6 4 3 8 8 C 1.38240 * 120.00208 * 269.72601 * 7 6 4 9 9 C 1.38233 * 119.99439 * 179.80977 * 8 7 6 10 10 C 1.38227 * 120.00542 * 0.40055 * 9 8 7 11 11 C 1.38242 * 120.00242 * 359.85717 * 10 9 8 12 12 C 1.38232 * 119.99658 * 90.00541 * 7 6 4 13 13 N 1.46504 * 109.47349 * 295.00023 * 4 3 2 14 14 C 1.34776 * 120.00216 * 84.99451 * 13 4 3 15 15 O 1.21592 * 119.99825 * 0.02562 * 14 13 4 16 16 N 1.34771 * 120.00322 * 180.02562 * 14 13 4 17 17 C 1.47020 * 125.64653 * 0.02562 * 16 14 13 18 18 C 1.54332 * 107.27071 * 181.02407 * 17 16 14 19 19 C 1.55156 * 102.93913 * 22.19588 * 18 17 16 20 20 O 1.42900 * 111.00397 * 82.57423 * 19 18 17 21 21 C 1.50704 * 111.00046 * 206.37984 * 19 18 17 22 22 H 1.07997 * 119.99696 * 0.02562 * 21 19 18 23 23 C 1.37876 * 119.99955 * 179.97438 * 21 19 18 24 24 N 1.31515 * 119.99724 * 0.02562 * 23 21 19 25 25 Si 1.86791 * 120.00017 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47488 * 60.00082 * 25 23 21 27 27 H 1.48507 * 109.47082 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47175 * 300.00065 * 25 23 21 29 29 C 1.47423 * 125.65127 * 179.72041 * 16 14 13 30 30 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 34 34 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 35 35 H 1.09001 * 109.47698 * 305.00111 * 6 4 3 36 36 H 1.09009 * 109.47010 * 65.00116 * 6 4 3 37 37 H 1.07993 * 119.99762 * 0.02562 * 8 7 6 38 38 H 1.08006 * 119.99383 * 180.23249 * 9 8 7 39 39 H 1.08005 * 120.00511 * 179.83215 * 10 9 8 40 40 H 1.07991 * 120.00093 * 179.97438 * 11 10 9 41 41 H 1.08004 * 120.00726 * 359.97438 * 12 7 6 42 42 H 0.97001 * 119.99585 * 265.00132 * 13 4 3 43 43 H 1.09001 * 109.88741 * 300.44269 * 17 16 14 44 44 H 1.09006 * 109.88161 * 61.60883 * 17 16 14 45 45 H 1.09007 * 110.71656 * 140.55728 * 18 17 16 46 46 H 1.08998 * 110.71924 * 263.65078 * 18 17 16 47 47 H 0.96701 * 114.00337 * 179.97438 * 20 19 18 48 48 H 0.96997 * 119.99870 * 179.97438 * 24 23 21 49 49 H 1.08998 * 110.36733 * 274.74793 * 29 16 14 50 50 H 1.09004 * 110.36774 * 37.06558 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6826 0.4573 1.1403 6 6 3.8875 2.6016 1.1110 7 6 4.9260 2.5703 2.2026 8 6 4.6430 3.1139 3.4417 9 6 5.5943 3.0816 4.4441 10 6 6.8314 2.5132 4.2050 11 6 7.1164 1.9743 2.9643 12 6 6.1636 2.0031 1.9630 13 7 2.2785 1.3224 2.4362 14 6 1.8697 0.1528 2.9666 15 8 2.1292 -0.8935 2.4042 16 7 1.1734 0.1429 4.1205 17 6 0.7923 1.3288 4.9014 18 6 0.0331 0.8310 6.1495 19 6 0.5209 -0.6351 6.2910 20 8 1.7786 -0.6935 6.9669 21 6 -0.5078 -1.4808 6.9965 22 1 -1.4366 -1.0388 7.3256 23 6 -0.2636 -2.8191 7.2209 24 7 0.8673 -3.3575 6.8196 25 14 -1.5389 -3.8676 8.0947 26 1 -2.8038 -3.8592 7.3169 27 1 -1.0383 -5.2608 8.2118 28 1 -1.7881 -3.3161 9.4508 29 6 0.6623 -1.0584 4.8053 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5401 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 2.6213 1.4026 -0.9314 34 1 1.3585 2.1317 0.0896 35 1 4.3816 2.6539 0.1408 36 1 3.2496 3.4759 1.2414 37 1 3.6775 3.5607 3.6276 38 1 5.3718 3.5030 5.4134 39 1 7.5756 2.4904 4.9874 40 1 8.0830 1.5306 2.7774 41 1 6.3863 1.5821 0.9937 42 1 2.0718 2.1571 2.8850 43 1 1.6850 1.8759 5.2043 44 1 0.1448 1.9724 4.3059 45 1 0.3088 1.4156 7.0272 46 1 -1.0439 0.8679 5.9860 47 1 2.1236 -1.5898 7.0792 48 1 1.0392 -4.2989 6.9778 49 1 -0.3065 -1.3450 4.3962 50 1 1.3726 -1.8798 4.7113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592033513.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:06 Heat of formation + Delta-G solvation = -37.558669 kcal Electronic energy + Delta-G solvation = -31326.352137 eV Core-core repulsion = 27318.614081 eV Total energy + Delta-G solvation = -4007.738057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.00351 -39.11311 -37.63614 -36.03938 -34.19473 -33.59414 -32.21337 -32.10719 -30.89850 -30.14644 -29.13986 -27.68281 -26.21195 -25.00208 -22.86755 -22.62043 -21.88355 -20.76512 -19.65180 -19.56231 -19.32286 -17.46534 -17.00083 -16.81261 -16.21604 -15.46166 -15.13174 -15.06824 -14.93438 -14.54854 -14.41472 -14.17024 -13.68760 -13.57995 -13.44013 -13.15759 -12.97181 -12.82106 -12.71790 -12.46376 -12.21363 -11.95966 -11.64854 -11.58413 -11.43050 -11.32640 -11.03131 -11.01568 -10.96132 -10.74175 -10.61406 -10.54277 -10.47388 -10.14507 -9.49068 -9.33443 -9.25923 -8.92272 -8.75075 -8.64813 -8.45471 -8.31676 -7.58363 -6.25813 -4.35465 1.33887 1.40254 2.64521 3.20620 3.25565 3.29282 3.31442 3.76401 3.89614 4.27461 4.52783 4.62144 4.76368 4.83658 4.98990 5.01245 5.08706 5.16932 5.24229 5.33632 5.45697 5.46118 5.53845 5.54779 5.63908 5.66223 5.69417 5.77909 5.83895 6.00410 6.01529 6.05905 6.07870 6.18147 6.29272 6.44624 6.51165 6.55447 6.56454 6.74917 6.88796 6.92906 6.99345 7.01002 7.04813 7.11684 7.28955 7.37525 7.73469 7.78035 8.04818 8.63442 8.71141 9.28480 9.34392 9.50615 10.81312 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011214 B = 0.003557 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.335718 B = 7870.598351 C = 9331.772783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 C -0.105 4.105 4 C 0.175 3.825 5 H 0.089 0.911 6 C -0.088 4.088 7 C -0.078 4.078 8 C -0.110 4.110 9 C -0.114 4.114 10 C -0.124 4.124 11 C -0.119 4.119 12 C -0.117 4.117 13 N -0.742 5.742 14 C 0.722 3.278 15 O -0.592 6.592 16 N -0.627 5.627 17 C 0.108 3.892 18 C -0.117 4.117 19 C 0.251 3.749 20 O -0.584 6.584 21 C -0.539 4.539 22 H 0.066 0.934 23 C 0.072 3.928 24 N -0.894 5.894 25 Si 0.904 3.096 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 C 0.115 3.885 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.388 0.612 43 H 0.053 0.947 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.386 0.614 48 H 0.271 0.729 49 H 0.054 0.946 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.170 14.183 -10.862 19.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.141 4.141 3 C -0.144 4.144 4 C 0.068 3.932 5 H 0.107 0.893 6 C -0.126 4.126 7 C -0.078 4.078 8 C -0.128 4.128 9 C -0.132 4.132 10 C -0.142 4.142 11 C -0.137 4.137 12 C -0.135 4.135 13 N -0.398 5.398 14 C 0.424 3.576 15 O -0.471 6.471 16 N -0.364 5.364 17 C -0.016 4.016 18 C -0.155 4.155 19 C 0.210 3.790 20 O -0.394 6.394 21 C -0.577 4.577 22 H 0.084 0.916 23 C -0.131 4.131 24 N -0.533 5.533 25 Si 0.731 3.269 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.200 1.200 29 C -0.007 4.007 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.222 0.778 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.238 0.762 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.430 13.855 -11.337 19.383 hybrid contribution -0.760 -0.902 0.793 1.421 sum 6.670 12.954 -10.544 17.985 Atomic orbital electron populations 1.23601 0.96006 1.00935 1.03802 1.22792 0.95880 0.98105 0.97320 1.21266 0.98659 0.96388 0.98076 1.20669 0.91561 0.98078 0.82850 0.89252 1.20940 0.95868 0.98116 0.97697 1.19748 0.94657 0.98266 0.95134 1.20968 0.98910 0.99984 0.92898 1.21145 0.93719 0.99382 0.98969 1.21134 0.97179 0.98889 0.97040 1.21113 0.99357 0.99661 0.93580 1.21004 0.93345 0.99758 0.99417 1.45113 1.61106 1.07559 1.26022 1.15418 0.78467 0.83751 0.79974 1.90849 1.62626 1.31014 1.62587 1.47835 1.56522 1.09817 1.22203 1.21872 0.97976 0.88358 0.93384 1.22591 0.99034 0.98423 0.95402 1.19603 0.83089 0.89635 0.86715 1.86056 1.38126 1.35269 1.79963 1.21473 1.03410 0.94163 1.38687 0.91609 1.25069 0.95758 0.97819 0.94498 1.69566 1.23753 1.13961 1.46044 0.86463 0.81341 0.79026 0.80078 1.20017 1.21067 1.20012 1.23113 0.97776 0.86109 0.93711 0.89609 0.89043 0.86887 0.90471 0.91613 0.89436 0.90508 0.86553 0.86114 0.86317 0.86298 0.86235 0.77801 0.92898 0.93495 0.90940 0.90627 0.76234 0.91850 0.92776 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.02 14.32 29.02 0.42 -2.60 16 2 C -0.12 -1.80 6.95 -36.02 -0.25 -2.05 16 3 C -0.11 -1.19 5.34 -27.88 -0.15 -1.34 16 4 C 0.17 2.15 2.24 -67.93 -0.15 1.99 16 5 H 0.09 1.34 7.58 -51.92 -0.39 0.94 16 6 C -0.09 -0.81 4.89 -27.89 -0.14 -0.95 16 7 C -0.08 -0.87 4.95 -104.62 -0.52 -1.39 16 8 C -0.11 -1.27 9.11 -39.58 -0.36 -1.63 16 9 C -0.11 -1.34 10.05 -39.59 -0.40 -1.74 16 10 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 11 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 12 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 13 N -0.74 -10.91 4.46 -58.68 -0.26 -11.17 16 14 C 0.72 14.40 7.80 -86.92 -0.68 13.72 16 15 O -0.59 -13.80 13.97 5.28 0.07 -13.72 16 16 N -0.63 -13.03 3.32 -176.10 -0.59 -13.62 16 17 C 0.11 1.90 6.15 -3.06 -0.02 1.88 16 18 C -0.12 -2.32 6.12 -24.89 -0.15 -2.47 16 19 C 0.25 6.11 0.89 -89.50 -0.08 6.03 16 20 O -0.58 -15.23 13.19 -35.23 -0.46 -15.70 16 21 C -0.54 -14.10 8.25 -34.44 -0.28 -14.38 16 22 H 0.07 1.67 7.76 -52.49 -0.41 1.27 16 23 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 24 N -0.89 -24.14 10.72 55.43 0.59 -23.55 16 25 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 C 0.12 2.81 5.64 -2.41 -0.01 2.80 16 30 H 0.09 1.13 7.84 -52.48 -0.41 0.72 16 31 H 0.09 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.11 1.88 7.52 -52.49 -0.39 1.49 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.69 7.79 -51.93 -0.40 0.28 16 35 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 36 H 0.08 0.60 8.08 -51.92 -0.42 0.18 16 37 H 0.12 1.17 7.59 -52.49 -0.40 0.77 16 38 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 39 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 42 H 0.39 4.97 6.83 -40.82 -0.28 4.69 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.08 1.42 8.02 -51.93 -0.42 1.00 16 47 H 0.39 10.48 6.93 45.56 0.32 10.80 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.05 1.37 8.04 -51.93 -0.42 0.95 16 50 H 0.08 2.20 7.64 -51.93 -0.40 1.80 16 LS Contribution 405.21 15.07 6.11 6.11 Total: -1.00 -30.76 405.21 -10.99 -41.76 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -7.38 Total: 20.02 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -4.05 Total: -5.56 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.25 Total: -48.33 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.39 Total: -29.42 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.76 -10.99 -41.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592033513.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.197 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds