Wall clock time and date at job start Wed Apr 1 2020 03:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 C 1.52997 * 109.47212 * 124.99896 * 3 2 1 5 5 H 1.09008 * 109.47017 * 54.99761 * 4 3 2 6 6 C 1.52994 * 109.47404 * 174.99684 * 4 3 2 7 7 C 1.50701 * 109.47248 * 184.99754 * 6 4 3 8 8 C 1.38240 * 120.00208 * 269.72601 * 7 6 4 9 9 C 1.38233 * 119.99439 * 179.80977 * 8 7 6 10 10 C 1.38227 * 120.00542 * 0.40055 * 9 8 7 11 11 C 1.38242 * 120.00242 * 359.85717 * 10 9 8 12 12 C 1.38232 * 119.99658 * 90.00541 * 7 6 4 13 13 N 1.46504 * 109.47349 * 295.00023 * 4 3 2 14 14 C 1.34776 * 120.00216 * 84.99451 * 13 4 3 15 15 O 1.21592 * 119.99825 * 0.02562 * 14 13 4 16 16 N 1.34771 * 120.00322 * 180.02562 * 14 13 4 17 17 C 1.47020 * 125.64653 * 0.02562 * 16 14 13 18 18 C 1.54332 * 107.27071 * 181.02407 * 17 16 14 19 19 C 1.55156 * 102.93913 * 22.19588 * 18 17 16 20 20 O 1.42900 * 111.00397 * 82.57423 * 19 18 17 21 21 C 1.50704 * 111.00046 * 206.37984 * 19 18 17 22 22 H 1.07997 * 119.99696 * 0.02562 * 21 19 18 23 23 C 1.37876 * 119.99955 * 179.97438 * 21 19 18 24 24 N 1.31515 * 119.99724 * 0.02562 * 23 21 19 25 25 Si 1.86791 * 120.00017 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47488 * 60.00082 * 25 23 21 27 27 H 1.48507 * 109.47082 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47175 * 300.00065 * 25 23 21 29 29 C 1.47423 * 125.65127 * 179.72041 * 16 14 13 30 30 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 34 34 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 35 35 H 1.09001 * 109.47698 * 305.00111 * 6 4 3 36 36 H 1.09009 * 109.47010 * 65.00116 * 6 4 3 37 37 H 1.07993 * 119.99762 * 0.02562 * 8 7 6 38 38 H 1.08006 * 119.99383 * 180.23249 * 9 8 7 39 39 H 1.08005 * 120.00511 * 179.83215 * 10 9 8 40 40 H 1.07991 * 120.00093 * 179.97438 * 11 10 9 41 41 H 1.08004 * 120.00726 * 359.97438 * 12 7 6 42 42 H 0.97001 * 119.99585 * 265.00132 * 13 4 3 43 43 H 1.09001 * 109.88741 * 300.44269 * 17 16 14 44 44 H 1.09006 * 109.88161 * 61.60883 * 17 16 14 45 45 H 1.09007 * 110.71656 * 140.55728 * 18 17 16 46 46 H 1.08998 * 110.71924 * 263.65078 * 18 17 16 47 47 H 0.96701 * 114.00337 * 179.97438 * 20 19 18 48 48 H 0.96997 * 119.99870 * 179.97438 * 24 23 21 49 49 H 1.08998 * 110.36733 * 274.74793 * 29 16 14 50 50 H 1.09004 * 110.36774 * 37.06558 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6826 0.4573 1.1403 6 6 3.8875 2.6016 1.1110 7 6 4.9260 2.5703 2.2026 8 6 4.6430 3.1139 3.4417 9 6 5.5943 3.0816 4.4441 10 6 6.8314 2.5132 4.2050 11 6 7.1164 1.9743 2.9643 12 6 6.1636 2.0031 1.9630 13 7 2.2785 1.3224 2.4362 14 6 1.8697 0.1528 2.9666 15 8 2.1292 -0.8935 2.4042 16 7 1.1734 0.1429 4.1205 17 6 0.7923 1.3288 4.9014 18 6 0.0331 0.8310 6.1495 19 6 0.5209 -0.6351 6.2910 20 8 1.7786 -0.6935 6.9669 21 6 -0.5078 -1.4808 6.9965 22 1 -1.4366 -1.0388 7.3256 23 6 -0.2636 -2.8191 7.2209 24 7 0.8673 -3.3575 6.8196 25 14 -1.5389 -3.8676 8.0947 26 1 -2.8038 -3.8592 7.3169 27 1 -1.0383 -5.2608 8.2118 28 1 -1.7881 -3.3161 9.4508 29 6 0.6623 -1.0584 4.8053 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5401 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 2.6213 1.4026 -0.9314 34 1 1.3585 2.1317 0.0896 35 1 4.3816 2.6539 0.1408 36 1 3.2496 3.4759 1.2414 37 1 3.6775 3.5607 3.6276 38 1 5.3718 3.5030 5.4134 39 1 7.5756 2.4904 4.9874 40 1 8.0830 1.5306 2.7774 41 1 6.3863 1.5821 0.9937 42 1 2.0718 2.1571 2.8850 43 1 1.6850 1.8759 5.2043 44 1 0.1448 1.9724 4.3059 45 1 0.3088 1.4156 7.0272 46 1 -1.0439 0.8679 5.9860 47 1 2.1236 -1.5898 7.0792 48 1 1.0392 -4.2989 6.9778 49 1 -0.3065 -1.3450 4.3962 50 1 1.3726 -1.8798 4.7113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592033513.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:02 Heat of formation + Delta-G solvation = -56.213688 kcal Electronic energy + Delta-G solvation = -31327.161080 eV Core-core repulsion = 27318.614081 eV Total energy + Delta-G solvation = -4008.546999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.34788 -40.16843 -39.17243 -37.35221 -35.99885 -34.70235 -34.14773 -33.35536 -31.72250 -31.65431 -30.33362 -29.44666 -27.07969 -26.89156 -24.37613 -23.46275 -22.95823 -21.74061 -21.37505 -20.90286 -20.61372 -19.24292 -18.71200 -17.67448 -17.42317 -17.00472 -16.78791 -16.21524 -16.19464 -15.90692 -15.74381 -15.52185 -14.93028 -14.85946 -14.66178 -14.53511 -14.24769 -14.22996 -13.73217 -13.60056 -13.55271 -13.45710 -13.24485 -12.95991 -12.81379 -12.54561 -12.52435 -12.32411 -12.28706 -12.21825 -12.08553 -11.89079 -11.79393 -11.61447 -11.25538 -11.04870 -10.63770 -10.48379 -10.29945 -9.83381 -9.74257 -9.50153 -9.22104 -8.25218 -6.42542 0.49682 0.56049 1.43078 1.43362 1.50722 1.51876 1.81511 2.34895 2.38328 2.91622 3.00952 3.19384 3.77033 3.82720 3.90950 4.00925 4.14248 4.18524 4.20788 4.26580 4.30374 4.36839 4.37234 4.39748 4.59426 4.61646 4.63677 4.69993 4.78597 4.78919 4.87038 4.95601 5.06804 5.08549 5.11159 5.17099 5.22011 5.24468 5.35892 5.42912 5.46305 5.61675 5.64132 5.68384 5.77070 5.77397 5.86766 6.00137 6.04494 6.18723 6.29361 6.64791 7.21120 7.30546 7.39799 7.76011 8.80096 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011214 B = 0.003557 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.335718 B = 7870.598351 C = 9331.772783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.130 4.130 3 C -0.097 4.097 4 C 0.174 3.826 5 H 0.058 0.942 6 C -0.076 4.076 7 C -0.089 4.089 8 C -0.122 4.122 9 C -0.134 4.134 10 C -0.141 4.141 11 C -0.133 4.133 12 C -0.131 4.131 13 N -0.720 5.720 14 C 0.716 3.284 15 O -0.634 6.634 16 N -0.635 5.635 17 C 0.111 3.889 18 C -0.111 4.111 19 C 0.234 3.766 20 O -0.590 6.590 21 C -0.558 4.558 22 H 0.070 0.930 23 C 0.026 3.974 24 N -0.919 5.919 25 Si 0.965 3.035 26 H -0.270 1.270 27 H -0.286 1.286 28 H -0.268 1.268 29 C 0.132 3.868 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.403 0.597 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.376 0.624 48 H 0.270 0.730 49 H 0.036 0.964 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.484 17.128 -11.611 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.148 4.148 3 C -0.135 4.135 4 C 0.069 3.931 5 H 0.076 0.924 6 C -0.114 4.114 7 C -0.089 4.089 8 C -0.140 4.140 9 C -0.152 4.152 10 C -0.158 4.158 11 C -0.151 4.151 12 C -0.148 4.148 13 N -0.377 5.377 14 C 0.418 3.582 15 O -0.516 6.516 16 N -0.371 5.371 17 C -0.012 4.012 18 C -0.149 4.149 19 C 0.193 3.807 20 O -0.399 6.399 21 C -0.596 4.596 22 H 0.088 0.912 23 C -0.175 4.175 24 N -0.559 5.559 25 Si 0.790 3.210 26 H -0.195 1.195 27 H -0.212 1.212 28 H -0.192 1.192 29 C 0.008 3.992 30 H 0.126 0.874 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.120 0.880 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.239 0.761 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.226 0.774 48 H 0.079 0.921 49 H 0.054 0.946 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.749 16.882 -12.097 21.838 hybrid contribution -0.485 -1.852 1.008 2.163 sum 6.264 15.030 -11.090 19.701 Atomic orbital electron populations 1.23679 0.96143 1.01198 1.04226 1.22883 0.96060 0.98781 0.97070 1.21266 0.98669 0.94763 0.98814 1.20819 0.91525 0.98756 0.81995 0.92381 1.20935 0.95171 0.96882 0.98389 1.20033 0.95176 0.98021 0.95673 1.21260 0.99568 1.00176 0.93028 1.21420 0.94143 0.99861 0.99733 1.21414 0.97670 0.99068 0.97693 1.21420 1.00304 0.99736 0.93671 1.21342 0.93613 0.99683 1.00206 1.44980 1.59972 1.06250 1.26470 1.15650 0.78306 0.84645 0.79624 1.90829 1.64041 1.33077 1.63669 1.47780 1.57001 1.09564 1.22781 1.22032 0.99142 0.87392 0.92592 1.22590 1.00004 0.95231 0.97082 1.19856 0.82150 0.92668 0.85989 1.86045 1.39094 1.34474 1.80303 1.21844 1.04029 0.94840 1.38902 0.91161 1.25840 0.97428 0.99057 0.95155 1.69693 1.25295 1.13985 1.46925 0.85506 0.79079 0.77265 0.79189 1.19489 1.21161 1.19250 1.22590 0.95543 0.86445 0.94631 0.87445 0.90768 0.90105 0.87398 0.89515 0.86730 0.87988 0.84963 0.85293 0.85184 0.84826 0.84689 0.76142 0.91354 0.89455 0.89890 0.89404 0.77384 0.92078 0.94579 0.94911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -6.18 14.32 67.78 0.97 -5.21 16 2 C -0.13 -3.73 6.95 25.65 0.18 -3.55 16 3 C -0.10 -1.89 5.34 29.85 0.16 -1.73 16 4 C 0.17 3.87 2.24 44.99 0.10 3.97 16 5 H 0.06 1.70 7.58 -2.38 -0.02 1.69 16 6 C -0.08 -1.10 4.89 29.85 0.15 -0.96 16 7 C -0.09 -1.77 4.95 -19.86 -0.10 -1.87 16 8 C -0.12 -2.56 9.11 22.27 0.20 -2.36 16 9 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 10 C -0.14 -3.12 10.05 22.27 0.22 -2.89 16 11 C -0.13 -2.85 10.05 22.27 0.22 -2.63 16 12 C -0.13 -2.70 9.70 22.27 0.22 -2.49 16 13 N -0.72 -19.63 4.46 -457.81 -2.04 -21.67 16 14 C 0.72 28.41 7.80 179.06 1.40 29.81 16 15 O -0.63 -30.66 13.97 -4.01 -0.06 -30.71 16 16 N -0.63 -26.14 3.32 -829.31 -2.76 -28.89 16 17 C 0.11 3.59 6.15 86.73 0.53 4.13 16 18 C -0.11 -4.22 6.12 31.79 0.19 -4.03 16 19 C 0.23 11.51 0.89 -10.07 -0.01 11.50 16 20 O -0.59 -31.39 13.19 -148.98 -1.97 -33.35 16 21 C -0.56 -29.40 8.25 25.60 0.21 -29.19 16 22 H 0.07 3.54 7.76 -2.91 -0.02 3.52 16 23 C 0.03 1.36 5.29 84.65 0.45 1.81 16 24 N -0.92 -51.38 10.72 21.45 0.23 -51.15 16 25 Si 0.96 42.27 29.54 68.60 2.03 44.30 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 29 C 0.13 6.67 5.64 86.93 0.49 7.16 16 30 H 0.11 2.58 7.84 -2.91 -0.02 2.56 16 31 H 0.07 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.08 2.84 7.52 -2.91 -0.02 2.81 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.40 7.79 -2.39 -0.02 1.38 16 35 H 0.11 1.12 8.09 -2.39 -0.02 1.10 16 36 H 0.10 1.04 8.08 -2.38 -0.02 1.02 16 37 H 0.13 2.21 7.59 -2.91 -0.02 2.19 16 38 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 39 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 40 H 0.13 2.30 8.06 -2.92 -0.02 2.28 16 41 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 42 H 0.40 8.79 6.83 -92.71 -0.63 8.16 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 45 H 0.08 2.96 8.14 -2.38 -0.02 2.94 16 46 H 0.09 3.09 8.02 -2.39 -0.02 3.07 16 47 H 0.38 21.29 6.93 -74.06 -0.51 20.78 16 48 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 49 H 0.04 1.90 8.04 -2.39 -0.02 1.88 16 50 H 0.03 1.92 7.64 -2.39 -0.02 1.90 16 Total: -1.00 -70.96 405.21 1.04 -69.92 By element: Atomic # 1 Polarization: 53.07 SS G_CDS: -0.21 Total: 52.86 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 5.81 Total: -1.30 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -4.57 Total: -101.72 kcal Atomic # 8 Polarization: -62.05 SS G_CDS: -2.02 Total: -64.07 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -70.96 1.04 -69.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592033513.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.709 kcal (2) G-P(sol) polarization free energy of solvation -70.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds