Wall clock time and date at job start Wed Apr 1 2020 05:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46636 * 2 1 4 4 C 1.50700 * 109.47471 * 240.00310 * 2 1 3 5 5 H 1.08003 * 119.99805 * 237.69283 * 4 2 1 6 6 C 1.37881 * 119.99987 * 57.68893 * 4 2 1 7 7 N 1.31509 * 120.00085 * 6.58543 * 6 4 2 8 8 Si 1.86801 * 119.99743 * 186.58386 * 6 4 2 9 9 H 1.48499 * 109.46876 * 84.99519 * 8 6 4 10 10 H 1.48499 * 109.46968 * 204.99606 * 8 6 4 11 11 H 1.48502 * 109.47141 * 324.99635 * 8 6 4 12 12 C 1.52995 * 109.47340 * 119.99719 * 2 1 3 13 13 S 1.81400 * 109.47339 * 300.00589 * 12 2 1 14 14 O 1.42093 * 110.54382 * 68.37104 * 13 12 2 15 15 O 1.42102 * 110.54124 * 291.62393 * 13 12 2 16 16 N 1.65600 * 104.45242 * 179.97438 * 13 12 2 17 17 C 1.46497 * 119.99720 * 64.99640 * 16 13 12 18 18 H 1.08998 * 109.41203 * 335.15736 * 17 16 13 19 19 C 1.52942 * 109.40736 * 95.00476 * 17 16 13 20 20 C 1.53217 * 108.69959 * 178.10886 * 19 17 16 21 21 C 1.52841 * 108.82526 * 301.28256 * 20 19 17 22 22 N 1.47155 * 110.10283 * 59.82747 * 21 20 19 23 23 C 1.47145 * 109.27309 * 175.60773 * 22 21 20 24 24 C 1.52840 * 110.11308 * 184.35745 * 23 22 21 25 25 C 1.53228 * 108.81573 * 300.17097 * 24 23 22 26 26 C 1.52940 * 108.82404 * 58.65317 * 25 24 23 27 27 C 1.46708 * 111.52121 * 299.37993 * 22 21 20 28 28 H 1.08995 * 109.51700 * 298.85961 * 27 22 21 29 29 H 1.08993 * 109.47483 * 306.66552 * 1 2 3 30 30 H 1.09004 * 109.47298 * 66.67461 * 1 2 3 31 31 H 1.09007 * 109.46748 * 186.66674 * 1 2 3 32 32 H 1.09007 * 109.47089 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47391 * 299.99768 * 3 2 1 34 34 H 1.09000 * 109.47697 * 60.00161 * 3 2 1 35 35 H 0.96998 * 120.00188 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.47604 * 180.02562 * 12 2 1 37 37 H 1.09006 * 109.47019 * 60.00258 * 12 2 1 38 38 H 0.96996 * 120.00025 * 244.99620 * 16 13 12 39 39 H 1.08999 * 109.59932 * 58.34203 * 19 17 16 40 40 H 1.09001 * 109.59881 * 297.86873 * 19 17 16 41 41 H 1.09006 * 109.58108 * 181.48328 * 20 19 17 42 42 H 1.08995 * 109.69284 * 61.15351 * 20 19 17 43 43 H 1.08995 * 109.36850 * 299.62779 * 21 20 19 44 44 H 1.09008 * 109.25937 * 179.97438 * 21 20 19 45 45 H 1.09000 * 109.36841 * 64.15872 * 23 22 21 46 46 H 1.08998 * 109.25639 * 304.48681 * 23 22 21 47 47 H 1.09000 * 109.58298 * 180.37087 * 24 23 22 48 48 H 1.09007 * 109.69085 * 60.03265 * 24 23 22 49 49 H 1.09002 * 109.59455 * 178.49253 * 25 24 23 50 50 H 1.08999 * 109.59980 * 298.80736 * 25 24 23 51 51 H 1.08999 * 109.40602 * 62.11566 * 26 25 24 52 52 H 1.08997 * 109.40161 * 181.87670 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6838 -1.5662 -1.1318 6 6 1.6605 -0.2676 -2.4822 7 7 0.9755 0.8478 -2.6085 8 14 2.1298 -1.2524 -3.9986 9 1 1.1194 -2.3157 -4.2305 10 1 2.1798 -0.3514 -5.1780 11 1 3.4631 -1.8730 -3.7928 12 6 2.0400 -0.7212 1.2492 13 16 1.4353 0.1339 2.7304 14 8 0.0280 -0.0184 2.8543 15 8 2.0478 1.4101 2.8544 16 7 2.0530 -0.7407 3.9936 17 6 3.5014 -0.7980 4.2059 18 1 4.0135 -0.6134 3.2616 19 6 3.9086 0.2700 5.2221 20 6 5.4174 0.1647 5.4674 21 6 5.7367 -1.2388 5.9815 22 7 5.3256 -2.2461 4.9907 23 6 5.7358 -3.5805 5.4558 24 6 5.4148 -4.6296 4.3916 25 6 3.9058 -4.6185 4.1261 26 6 3.4960 -3.2190 3.6651 27 6 3.8832 -2.1866 4.7294 28 1 3.3376 -2.3913 5.6505 29 1 -0.3634 0.6136 0.8242 30 1 -0.3634 0.4069 -0.9437 31 1 -0.3633 -1.0208 0.1193 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.7135 1.1591 -3.4891 36 1 3.1300 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2492 38 1 1.4558 -1.2151 4.5930 39 1 3.3738 0.1073 6.1578 40 1 3.6703 1.2584 4.8292 41 1 5.7191 0.9032 6.2102 42 1 5.9543 0.3434 4.5359 43 1 5.2026 -1.4117 6.9158 44 1 6.8092 -1.3216 6.1581 45 1 5.2020 -3.8228 6.3747 46 1 6.8082 -3.5794 5.6503 47 1 5.7159 -5.6149 4.7475 48 1 5.9494 -4.3945 3.4712 49 1 3.6660 -5.3443 3.3489 50 1 3.3716 -4.8731 5.0415 51 1 4.0055 -2.9817 2.7312 52 1 2.4182 -3.1915 3.5054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594485132.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:22 Heat of formation + Delta-G solvation = -107.806928 kcal Electronic energy + Delta-G solvation = -31047.075385 eV Core-core repulsion = 27171.735087 eV Total energy + Delta-G solvation = -3875.340298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.00173 -38.12905 -38.11517 -37.08836 -36.81945 -35.61162 -33.63654 -32.27319 -31.45848 -28.81920 -28.28816 -27.69257 -27.23695 -24.46860 -24.27532 -23.28877 -21.55395 -20.94306 -20.63294 -20.11394 -18.75611 -17.92145 -17.65611 -16.89783 -16.63856 -16.51723 -16.26014 -15.67628 -15.58285 -15.26184 -14.99897 -14.93386 -14.67612 -14.50083 -14.42383 -14.17705 -14.02174 -13.77586 -13.43158 -13.08480 -13.02366 -12.86931 -12.86048 -12.77944 -12.71014 -12.55433 -12.47377 -12.21833 -12.14399 -12.07968 -11.96046 -11.82571 -11.79310 -11.56693 -11.51179 -11.41555 -11.20558 -11.06418 -10.63864 -10.38124 -10.23608 -9.24795 -8.02548 -6.20174 -0.60717 1.44987 1.46651 1.54594 1.85249 2.45144 2.82300 2.96331 3.19563 3.33793 3.56781 3.72446 3.91038 3.98413 4.04486 4.07628 4.18233 4.23945 4.25929 4.27227 4.42936 4.47181 4.58439 4.59517 4.70462 4.75035 4.82263 4.85527 4.86070 4.87784 4.90475 4.98526 5.02052 5.07504 5.08724 5.08995 5.16601 5.25538 5.29053 5.38561 5.39002 5.42260 5.49833 5.53359 5.65606 5.97461 6.07373 6.12325 6.17960 6.22915 6.35647 6.84049 7.47682 8.97315 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012654 B = 0.003882 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.141414 B = 7211.755344 C = 8308.366475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.071 3.929 3 C -0.159 4.159 4 C -0.515 4.515 5 H 0.063 0.937 6 C 0.019 3.981 7 N -0.907 5.907 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.268 1.268 12 C -0.584 4.584 13 S 2.614 3.386 14 O -0.993 6.993 15 O -0.987 6.987 16 N -1.106 6.106 17 C 0.156 3.844 18 H 0.081 0.919 19 C -0.142 4.142 20 C -0.115 4.115 21 C 0.053 3.947 22 N -0.540 5.540 23 C 0.056 3.944 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.126 4.126 27 C 0.093 3.907 28 H 0.054 0.946 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.422 0.578 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.040 0.960 44 H 0.091 0.909 45 H 0.038 0.962 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.066 0.934 51 H 0.062 0.938 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.978 -9.946 19.009 23.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.069 3.931 3 C -0.217 4.217 4 C -0.554 4.554 5 H 0.081 0.919 6 C -0.180 4.180 7 N -0.546 5.546 8 Si 0.778 3.222 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.193 1.193 12 C -0.716 4.716 13 S 2.711 3.289 14 O -0.984 6.984 15 O -0.976 6.976 16 N -0.866 5.866 17 C 0.049 3.951 18 H 0.099 0.901 19 C -0.181 4.181 20 C -0.153 4.153 21 C -0.074 4.074 22 N -0.266 5.266 23 C -0.071 4.071 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.164 4.164 27 C -0.017 4.017 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.258 0.742 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.109 0.891 45 H 0.056 0.944 46 H 0.105 0.895 47 H 0.101 0.899 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.081 0.919 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.701 -8.850 18.421 22.622 hybrid contribution -0.437 -0.911 -0.506 1.130 sum 9.264 -9.762 17.915 22.407 Atomic orbital electron populations 1.22141 0.97793 0.99830 1.01684 1.17908 0.92210 0.92145 0.90884 1.22228 0.99705 0.98401 1.01330 1.21257 1.29948 1.13887 0.90335 0.91928 1.25651 0.95246 0.95596 1.01535 1.69948 1.39401 1.21330 1.23874 0.85664 0.78794 0.78617 0.79115 1.20215 1.21352 1.19274 1.30457 1.12239 1.13368 1.15560 1.04738 0.73413 0.74988 0.75774 1.93511 1.31437 1.87099 1.86316 1.93508 1.78331 1.39917 1.85888 1.55454 1.14616 1.70526 1.45983 1.20906 0.78447 0.95770 1.00000 0.90127 1.22155 0.97544 0.98973 0.99473 1.21577 0.94388 0.96924 1.02446 1.22200 1.01537 0.91066 0.92633 1.62193 1.13872 1.05361 1.45160 1.22154 1.01184 0.87481 0.96302 1.21601 0.95875 0.98701 0.99334 1.21573 0.96575 0.96047 1.01574 1.21785 1.01441 0.94750 0.98426 1.21711 0.88692 0.93278 0.97995 0.92799 0.95437 0.91097 0.93889 0.94321 0.90863 0.95056 0.92925 0.85047 0.84480 0.74184 0.90717 0.91926 0.89349 0.91566 0.94142 0.89054 0.94378 0.89512 0.89933 0.91967 0.91386 0.91516 0.91916 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.80 7.58 71.98 0.55 -7.26 16 2 C 0.07 3.41 0.52 -52.93 -0.03 3.39 16 3 C -0.16 -7.97 7.79 71.98 0.56 -7.41 16 4 C -0.52 -26.80 8.01 25.60 0.20 -26.59 16 5 H 0.06 3.13 7.75 -2.91 -0.02 3.11 16 6 C 0.02 1.02 5.09 84.66 0.43 1.45 16 7 N -0.91 -50.33 9.39 21.45 0.20 -50.13 16 8 Si 0.95 42.15 29.54 68.60 2.03 44.17 16 9 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 12 C -0.58 -22.15 4.90 71.98 0.35 -21.80 16 13 S 2.61 94.73 4.41 -56.49 -0.25 94.48 16 14 O -0.99 -41.20 15.84 -127.65 -2.02 -43.22 16 15 O -0.99 -40.94 14.77 -127.65 -1.89 -42.83 16 16 N -1.11 -28.39 4.58 -169.14 -0.77 -29.17 16 17 C 0.16 3.68 2.07 45.05 0.09 3.77 16 18 H 0.08 2.11 7.15 -2.39 -0.02 2.09 16 19 C -0.14 -3.16 5.62 30.65 0.17 -2.98 16 20 C -0.11 -2.03 6.10 30.61 0.19 -1.84 16 21 C 0.05 0.80 5.33 86.20 0.46 1.26 16 22 N -0.54 -9.53 4.71 -869.82 -4.10 -13.63 16 23 C 0.06 0.78 5.33 86.20 0.46 1.24 16 24 C -0.12 -1.67 6.11 30.62 0.19 -1.49 16 25 C -0.12 -1.90 6.01 30.65 0.18 -1.72 16 26 C -0.13 -2.48 5.09 30.66 0.16 -2.33 16 27 C 0.09 1.79 1.88 45.11 0.08 1.88 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 29 H 0.03 1.31 5.96 -2.39 -0.01 1.30 16 30 H 0.07 3.85 5.99 -2.39 -0.01 3.83 16 31 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.07 4.02 6.01 -2.39 -0.01 4.00 16 34 H 0.03 1.50 5.46 -2.39 -0.01 1.48 16 35 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 36 H 0.13 4.55 7.44 -2.39 -0.02 4.54 16 37 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 38 H 0.42 8.85 8.80 -96.75 -0.85 7.99 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.70 7.46 -2.39 -0.02 1.68 16 41 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.09 1.11 8.03 -2.38 -0.02 1.10 16 45 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.09 1.02 8.03 -2.39 -0.02 1.00 16 47 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 49 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 52 H 0.07 1.40 7.61 -2.39 -0.02 1.38 16 Total: -1.00 -65.87 389.98 -2.71 -68.58 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: 0.04 Total: 32.18 kcal Atomic # 6 Polarization: -64.49 SS G_CDS: 4.05 Total: -60.44 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -4.67 Total: -92.92 kcal Atomic # 8 Polarization: -82.15 SS G_CDS: -3.91 Total: -86.05 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 94.73 SS G_CDS: -0.25 Total: 94.48 kcal Total: -65.87 -2.71 -68.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594485132.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.228 kcal (2) G-P(sol) polarization free energy of solvation -65.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds