Wall clock time and date at job start Wed Apr 1 2020 03:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47115 * 2 1 4 4 C 1.53003 * 109.47305 * 239.99987 * 2 1 3 5 5 N 1.46904 * 109.47358 * 119.99947 * 2 1 3 6 6 C 1.47843 * 110.99779 * 298.20645 * 5 2 1 7 7 C 1.55118 * 104.90243 * 146.23738 * 6 5 2 8 8 C 1.55140 * 101.55913 * 323.15994 * 7 6 5 9 9 H 1.08995 * 110.70211 * 276.95982 * 8 7 6 10 10 C 1.52998 * 110.70293 * 153.90782 * 8 7 6 11 11 N 1.46501 * 109.47453 * 68.80558 * 10 8 7 12 12 S 1.65600 * 120.00115 * 164.72462 * 11 10 8 13 13 O 1.42103 * 104.27571 * 181.34352 * 12 11 10 14 14 O 1.42096 * 104.27446 * 309.20246 * 12 11 10 15 15 C 1.81399 * 104.45102 * 65.27184 * 12 11 10 16 16 C 1.52998 * 109.47361 * 174.13999 * 15 12 11 17 17 C 1.50707 * 115.54773 * 39.64398 * 16 15 12 18 18 H 1.07999 * 120.00412 * 273.69190 * 17 16 15 19 19 C 1.37882 * 119.99641 * 93.68893 * 17 16 15 20 20 N 1.31520 * 119.99998 * 354.38577 * 19 17 16 21 21 Si 1.86801 * 119.99668 * 174.38507 * 19 17 16 22 22 H 1.48499 * 109.47215 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47195 * 120.00305 * 21 19 17 24 24 H 1.48504 * 109.46655 * 240.00088 * 21 19 17 25 25 C 1.52999 * 117.50299 * 253.94174 * 16 15 12 26 26 C 1.52994 * 117.50098 * 185.31418 * 16 15 12 27 27 C 1.47446 * 110.99620 * 59.04703 * 5 2 1 28 28 H 1.09002 * 109.46988 * 306.73065 * 1 2 3 29 29 H 1.08995 * 109.46903 * 66.73048 * 1 2 3 30 30 H 1.09002 * 109.47037 * 186.72968 * 1 2 3 31 31 H 1.09005 * 109.47040 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46656 * 299.99975 * 3 2 1 33 33 H 1.08999 * 109.46788 * 59.99788 * 3 2 1 34 34 H 1.08996 * 109.47254 * 300.00147 * 4 2 1 35 35 H 1.08996 * 109.46663 * 59.99965 * 4 2 1 36 36 H 1.09000 * 109.47109 * 179.97438 * 4 2 1 37 37 H 1.08994 * 110.37410 * 265.19077 * 6 5 2 38 38 H 1.09001 * 110.37304 * 27.53350 * 6 5 2 39 39 H 1.08997 * 111.14540 * 205.04441 * 7 6 5 40 40 H 1.09005 * 110.91967 * 81.17120 * 7 6 5 41 41 H 1.08994 * 109.47369 * 308.80319 * 10 8 7 42 42 H 1.09000 * 109.47162 * 188.80342 * 10 8 7 43 43 H 0.96999 * 120.00036 * 344.99569 * 11 10 8 44 44 H 1.08994 * 109.47224 * 294.14500 * 15 12 11 45 45 H 1.09001 * 109.46941 * 54.14184 * 15 12 11 46 46 H 0.96996 * 119.99541 * 184.99662 * 20 19 17 47 47 H 1.09004 * 117.49762 * 359.97438 * 25 16 15 48 48 H 1.08999 * 117.50321 * 145.01983 * 25 16 15 49 49 H 1.09002 * 117.49888 * 214.97957 * 26 16 15 50 50 H 1.09003 * 117.50106 * 359.97438 * 26 16 15 51 51 H 1.09004 * 109.88383 * 117.33687 * 27 5 2 52 52 H 1.08999 * 110.02610 * 356.22862 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0197 -0.6925 1.1995 6 6 1.5813 0.0024 2.4285 7 6 1.3577 -1.1275 3.4675 8 6 0.7715 -2.2557 2.5784 9 1 -0.2998 -2.1157 2.4347 10 6 1.0585 -3.6292 3.1884 11 7 0.2799 -3.7895 4.4190 12 16 0.0903 -5.2919 5.0891 13 8 -0.7305 -5.0670 6.2271 14 8 -0.3576 -6.1023 4.0113 15 6 1.7634 -5.7756 5.5966 16 6 1.7010 -7.0957 6.3674 17 6 0.7336 -8.1179 5.8284 18 1 -0.3016 -8.0966 6.1356 19 6 1.1702 -9.0805 4.9429 20 7 2.4018 -9.0409 4.4832 21 14 0.0123 -10.4406 4.3963 22 1 -1.3072 -10.2613 5.0536 23 1 -0.1567 -10.3841 2.9221 24 1 0.5806 -11.7580 4.7793 25 6 1.8967 -7.0385 7.8838 26 6 2.9992 -7.6117 6.9911 27 6 1.5283 -2.0819 1.2450 28 1 -0.3633 0.6146 0.8236 29 1 -0.3633 0.4060 -0.9440 30 1 -0.3633 -1.0206 0.1204 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2494 37 1 2.3550 0.6884 2.7731 38 1 0.6496 0.5390 2.2492 39 1 0.6438 -0.8225 4.2326 40 1 2.3018 -1.4353 3.9170 41 1 2.1210 -3.7102 3.4176 42 1 0.7797 -4.4076 2.4781 43 1 -0.1279 -3.0161 4.8391 44 1 2.3894 -5.8999 4.7131 45 1 2.1872 -5.0012 6.2360 46 1 2.6871 -9.6740 3.8060 47 1 2.0704 -6.0602 8.3322 48 1 1.3257 -7.7401 8.4918 49 1 3.1535 -8.6905 7.0120 50 1 3.8980 -7.0109 6.8520 51 1 2.3693 -2.7741 1.2029 52 1 0.8539 -2.2669 0.4089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594793928.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:05 Heat of formation + Delta-G solvation = -73.707800 kcal Electronic energy + Delta-G solvation = -29665.091284 eV Core-core repulsion = 25791.229634 eV Total energy + Delta-G solvation = -3873.861649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.96555 -38.53480 -37.91089 -37.39062 -36.67311 -34.84951 -34.06769 -30.81981 -30.25739 -29.89359 -28.22105 -27.92710 -27.50106 -25.46720 -22.95752 -22.91393 -21.56923 -21.23753 -20.17382 -19.56690 -18.50016 -18.21181 -17.70195 -17.12435 -16.87238 -16.60858 -16.15404 -15.68988 -15.55965 -15.19868 -15.07656 -14.92395 -14.85843 -14.54665 -13.98915 -13.85244 -13.70386 -13.42622 -13.35096 -13.04060 -13.02202 -12.93020 -12.89676 -12.84086 -12.76537 -12.70370 -12.53511 -12.44127 -12.12848 -12.06424 -11.90985 -11.87898 -11.82912 -11.67547 -11.61271 -11.50968 -11.36309 -10.92009 -10.51654 -10.38081 -9.87375 -9.14257 -8.22353 -6.40211 -0.43003 1.34184 1.38675 1.48316 2.15756 2.38709 3.01670 3.03383 3.07695 3.37176 3.54172 3.62831 3.65676 3.89865 3.98935 4.02587 4.04780 4.28138 4.31435 4.34546 4.43489 4.47436 4.51156 4.61105 4.62495 4.67500 4.70178 4.74283 4.85032 4.86041 4.89629 4.90470 4.99392 5.00463 5.01420 5.03152 5.05485 5.16962 5.18085 5.22767 5.26800 5.36273 5.42991 5.44015 5.48331 5.65612 5.68141 6.10988 6.19656 6.21130 6.28605 6.68745 7.36406 8.83817 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.002781 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.075858 B =10064.142955 C =10599.863461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.091 3.909 3 C -0.134 4.134 4 C -0.139 4.139 5 N -0.523 5.523 6 C 0.040 3.960 7 C -0.125 4.125 8 C -0.108 4.108 9 H 0.082 0.918 10 C 0.121 3.879 11 N -1.116 6.116 12 S 2.634 3.366 13 O -1.004 7.004 14 O -0.991 6.991 15 C -0.556 4.556 16 C 0.009 3.991 17 C -0.553 4.553 18 H 0.045 0.955 19 C 0.055 3.945 20 N -0.884 5.884 21 Si 0.929 3.071 22 H -0.274 1.274 23 H -0.276 1.276 24 H -0.268 1.268 25 C -0.194 4.194 26 C -0.132 4.132 27 C 0.044 3.956 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.421 0.579 44 H 0.123 0.877 45 H 0.138 0.862 46 H 0.266 0.734 47 H 0.101 0.899 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.086 0.914 51 H 0.076 0.924 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 21.973 -8.157 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.001 3.999 3 C -0.191 4.191 4 C -0.197 4.197 5 N -0.247 5.247 6 C -0.087 4.087 7 C -0.163 4.163 8 C -0.129 4.129 9 H 0.101 0.899 10 C -0.005 4.005 11 N -0.877 5.877 12 S 2.732 3.268 13 O -0.995 6.995 14 O -0.981 6.981 15 C -0.688 4.688 16 C 0.007 3.993 17 C -0.590 4.590 18 H 0.064 0.936 19 C -0.150 4.150 20 N -0.519 5.519 21 Si 0.754 3.246 22 H -0.199 1.199 23 H -0.202 1.202 24 H -0.193 1.193 25 C -0.231 4.231 26 C -0.171 4.171 27 C -0.085 4.085 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.256 0.744 44 H 0.142 0.858 45 H 0.156 0.844 46 H 0.076 0.924 47 H 0.119 0.881 48 H 0.096 0.904 49 H 0.083 0.917 50 H 0.104 0.896 51 H 0.094 0.906 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.639 21.242 -8.315 22.870 hybrid contribution -0.987 -0.786 -0.157 1.271 sum 0.652 20.456 -8.472 22.150 Atomic orbital electron populations 1.22523 0.96698 1.01960 1.02768 1.21309 0.92656 0.95139 0.90792 1.21824 1.01514 0.93600 1.02202 1.21889 1.01586 1.00000 0.96191 1.63879 1.57310 1.01393 1.02160 1.23137 0.99857 0.96607 0.89094 1.22876 1.01838 0.94137 0.97435 1.22519 1.00768 0.93638 0.95956 0.89934 1.21404 0.95630 0.98445 0.85048 1.55481 1.68462 1.26648 1.37090 1.03950 0.77584 0.72250 0.73045 1.93440 1.66967 1.85154 1.53908 1.93466 1.80083 1.68956 1.55568 1.29869 1.22200 1.06143 1.10627 1.18358 0.98975 0.91544 0.90422 1.20762 0.94702 1.14663 1.28897 0.93643 1.25441 0.95987 0.98535 0.95009 1.70021 1.17026 1.37239 1.27635 0.85951 0.79983 0.80037 0.78616 1.19853 1.20169 1.19259 1.23259 1.03877 1.01980 0.93946 1.22377 0.91965 0.99197 1.03517 1.22849 0.98426 0.91170 0.96051 0.92141 0.91296 0.92907 0.92309 0.91356 0.92411 0.93084 0.91238 0.92303 0.89805 0.92477 0.89603 0.90222 0.90241 0.91735 0.74369 0.85825 0.84366 0.92425 0.88066 0.90421 0.91720 0.89553 0.90552 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 7.88 71.98 0.57 -1.92 16 2 C 0.09 1.31 0.67 3.53 0.00 1.31 16 3 C -0.13 -1.63 8.34 71.98 0.60 -1.03 16 4 C -0.14 -1.99 8.36 71.98 0.60 -1.39 16 5 N -0.52 -8.80 5.00 -835.71 -4.18 -12.97 16 6 C 0.04 0.59 5.14 86.85 0.45 1.04 16 7 C -0.12 -1.95 6.17 32.05 0.20 -1.75 16 8 C -0.11 -2.04 3.04 -9.62 -0.03 -2.07 16 9 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 10 C 0.12 2.97 5.43 86.38 0.47 3.44 16 11 N -1.12 -31.21 5.81 -187.50 -1.09 -32.29 16 12 S 2.63 107.44 4.64 -56.49 -0.26 107.18 16 13 O -1.00 -45.66 18.08 -127.65 -2.31 -47.97 16 14 O -0.99 -49.24 16.60 -127.65 -2.12 -51.35 16 15 C -0.56 -22.05 6.19 71.98 0.45 -21.60 16 16 C 0.01 0.43 1.81 -52.93 -0.10 0.34 16 17 C -0.55 -30.99 6.92 25.60 0.18 -30.81 16 18 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 19 C 0.05 3.06 5.36 84.65 0.45 3.52 16 20 N -0.88 -49.17 12.38 21.45 0.27 -48.90 16 21 Si 0.93 45.27 29.54 68.60 2.03 47.29 16 22 H -0.27 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 C -0.19 -8.18 9.88 30.59 0.30 -7.88 16 26 C -0.13 -5.93 8.97 30.59 0.27 -5.66 16 27 C 0.04 0.81 5.08 86.64 0.44 1.25 16 28 H 0.06 0.80 6.33 -2.39 -0.02 0.79 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.83 6.10 -2.39 -0.01 0.81 16 31 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.67 6.98 -2.39 -0.02 0.65 16 34 H 0.05 0.80 6.56 -2.39 -0.02 0.78 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 38 H 0.06 0.78 5.49 -2.39 -0.01 0.76 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.29 7.98 -2.38 -0.02 1.27 16 41 H 0.08 1.75 8.06 -2.39 -0.02 1.73 16 42 H 0.06 1.83 7.68 -2.39 -0.02 1.81 16 43 H 0.42 9.60 8.35 -96.75 -0.81 8.80 16 44 H 0.12 4.89 8.14 -2.39 -0.02 4.87 16 45 H 0.14 4.28 7.94 -2.39 -0.02 4.26 16 46 H 0.27 14.06 8.32 -92.71 -0.77 13.29 16 47 H 0.10 3.57 8.08 -2.38 -0.02 3.55 16 48 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 49 H 0.06 3.20 7.98 -2.39 -0.02 3.18 16 50 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 51 H 0.08 1.51 7.82 -2.38 -0.02 1.49 16 52 H 0.07 1.20 4.81 -2.39 -0.01 1.18 16 Total: -1.00 -70.08 408.47 -2.72 -72.80 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.09 Total: 29.45 kcal Atomic # 6 Polarization: -68.08 SS G_CDS: 4.85 Total: -63.22 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -5.00 Total: -94.17 kcal Atomic # 8 Polarization: -94.90 SS G_CDS: -4.43 Total: -99.33 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 107.44 SS G_CDS: -0.26 Total: 107.18 kcal Total: -70.08 -2.72 -72.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594793928.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.903 kcal (2) G-P(sol) polarization free energy of solvation -70.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds