Wall clock time and date at job start Wed Apr 1 2020 03:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47097 * 2 1 4 4 C 1.53004 * 109.47269 * 119.99868 * 2 1 3 5 5 H 1.09005 * 109.46968 * 303.93893 * 4 2 1 6 6 N 1.46497 * 109.46794 * 63.93178 * 4 2 1 7 7 C 1.34784 * 120.00124 * 275.00081 * 6 4 2 8 8 O 1.21279 * 119.99786 * 0.02562 * 7 6 4 9 9 C 1.50698 * 119.99802 * 180.02562 * 7 6 4 10 10 C 1.50699 * 109.47152 * 179.97438 * 9 7 6 11 11 C 1.38236 * 120.00494 * 269.73073 * 10 9 7 12 12 C 1.38228 * 119.99984 * 179.76311 * 11 10 9 13 13 C 1.38233 * 120.00409 * 0.48723 * 12 11 10 14 14 C 1.38241 * 119.99466 * 359.78786 * 13 12 11 15 15 C 1.38223 * 120.00415 * 359.95628 * 14 13 12 16 16 C 1.50689 * 109.47280 * 183.93186 * 4 2 1 17 17 O 1.21278 * 120.00070 * 275.67564 * 16 4 2 18 18 N 1.34778 * 120.00210 * 95.67601 * 16 4 2 19 19 C 1.47576 * 134.49636 * 175.16922 * 18 16 4 20 20 C 1.53950 * 86.11772 * 155.35662 * 19 18 16 21 21 C 1.50707 * 113.74174 * 137.95110 * 20 19 18 22 22 H 1.08005 * 119.99682 * 359.72753 * 21 20 19 23 23 C 1.37863 * 120.00116 * 180.02562 * 21 20 19 24 24 N 1.31513 * 120.00458 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 120.00106 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46754 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47270 * 120.00220 * 25 23 21 28 28 H 1.48505 * 109.47038 * 240.00097 * 25 23 21 29 29 C 1.47588 * 134.48958 * 355.16742 * 18 16 4 30 30 H 1.09002 * 109.46993 * 299.99695 * 1 2 3 31 31 H 1.08999 * 109.47081 * 59.99480 * 1 2 3 32 32 H 1.08999 * 109.47054 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46998 * 239.99671 * 2 1 3 34 34 H 1.08999 * 109.47091 * 175.94056 * 3 2 1 35 35 H 1.08997 * 109.47251 * 295.94901 * 3 2 1 36 36 H 1.09006 * 109.46951 * 55.94676 * 3 2 1 37 37 H 0.97004 * 120.00102 * 95.00210 * 6 4 2 38 38 H 1.09005 * 109.47634 * 300.00128 * 9 7 6 39 39 H 1.09002 * 109.47417 * 60.00252 * 9 7 6 40 40 H 1.08001 * 119.99329 * 359.97438 * 11 10 9 41 41 H 1.07998 * 120.00043 * 180.24915 * 12 11 10 42 42 H 1.08000 * 120.00765 * 179.76736 * 13 12 11 43 43 H 1.08004 * 119.99689 * 179.97438 * 14 13 12 44 44 H 1.08000 * 120.00545 * 180.02562 * 15 14 13 45 45 H 1.09002 * 113.77029 * 41.06154 * 19 18 16 46 46 H 1.08997 * 113.77037 * 269.65951 * 19 18 16 47 47 H 1.08993 * 113.74468 * 269.15354 * 20 19 18 48 48 H 0.97003 * 120.00721 * 179.97438 * 24 23 21 49 49 H 1.08997 * 113.76682 * 90.34248 * 29 18 16 50 50 H 1.09004 * 113.76751 * 318.94565 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6202 -0.2497 2.1379 6 7 1.6306 -2.1270 1.2028 7 6 0.4114 -2.4890 1.6492 8 8 -0.3468 -1.6507 2.0889 9 6 -0.0095 -3.9352 1.6020 10 6 -1.4044 -4.0707 2.1559 11 6 -1.5927 -4.3057 3.5051 12 6 -2.8723 -4.4251 4.0139 13 6 -3.9636 -4.3197 3.1719 14 6 -3.7752 -4.0904 1.8217 15 6 -2.4958 -3.9657 1.3138 16 6 3.5438 -0.6374 1.2990 17 8 4.2164 -1.4408 0.6882 18 7 4.1413 0.3303 2.0221 19 6 5.5407 0.6521 2.3629 20 6 5.0526 2.1005 2.5478 21 6 5.6349 2.7874 3.7562 22 1 6.3230 2.2582 4.3989 23 6 5.2845 4.0891 4.0448 24 7 4.4416 4.7314 3.2659 25 14 6.0068 4.9408 5.5424 26 1 6.9212 4.0083 6.2490 27 1 6.7625 6.1441 5.1110 28 1 4.9102 5.3468 6.4578 29 6 3.6589 1.4938 2.7913 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1276 1.4434 0.0727 35 1 1.7372 1.9350 -0.9240 36 1 1.6186 1.9769 0.8515 37 1 2.2369 -2.7975 0.8508 38 1 0.0075 -4.2851 0.5697 39 1 0.6781 -4.5335 2.1998 40 1 -0.7399 -4.3925 4.1621 41 1 -3.0195 -4.6047 5.0686 42 1 -4.9634 -4.4167 3.5688 43 1 -4.6278 -4.0084 1.1638 44 1 -2.3485 -3.7861 0.2590 45 1 6.2354 0.5253 1.5326 46 1 5.8872 0.1843 3.2843 47 1 5.1182 2.7046 1.6429 48 1 4.1947 5.6472 3.4692 49 1 3.4527 1.2732 3.8386 50 1 2.8510 2.0389 2.3030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598034663.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:35 Heat of formation + Delta-G solvation = -23.179322 kcal Electronic energy + Delta-G solvation = -30351.688786 eV Core-core repulsion = 26344.574264 eV Total energy + Delta-G solvation = -4007.114521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.61172 -39.63327 -38.74931 -37.22488 -35.70607 -33.50579 -32.84912 -32.68602 -31.04559 -29.64190 -28.27745 -27.11595 -26.23685 -25.16844 -24.74546 -22.74670 -21.96499 -20.93185 -20.39198 -19.92537 -18.46847 -17.30986 -17.04247 -16.80929 -16.39036 -16.01718 -15.91243 -15.24668 -15.18555 -15.01989 -14.65618 -14.41791 -14.04344 -13.62059 -13.49864 -13.28339 -13.03306 -12.97598 -12.61922 -12.49576 -12.36503 -12.22851 -12.00437 -11.90457 -11.57043 -11.43675 -11.31584 -11.23482 -11.17020 -11.02307 -10.84639 -10.80266 -10.62080 -10.41395 -9.90333 -9.68506 -9.37046 -9.14411 -9.05368 -8.89798 -8.84521 -8.62190 -7.94051 -6.21095 -4.26838 1.16364 1.26979 2.57646 2.77485 3.16317 3.21340 3.30654 3.33700 3.55262 3.75511 4.31070 4.43268 4.62865 4.71332 4.83627 4.87212 4.93853 4.98007 5.05963 5.08426 5.10750 5.22977 5.34720 5.39631 5.47269 5.56664 5.79150 5.82561 5.87011 5.87646 5.99239 6.05399 6.10837 6.14802 6.20022 6.22626 6.28766 6.32355 6.32992 6.35392 6.41805 6.49887 6.54572 6.56211 6.62809 6.79036 6.84005 7.48587 7.50651 7.76204 8.12167 8.19902 8.36341 8.57831 8.76820 9.40436 10.88396 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.002461 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.808017 B =11374.754156 C =11999.665720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 C -0.154 4.154 4 C 0.138 3.862 5 H 0.105 0.895 6 N -0.714 5.714 7 C 0.515 3.485 8 O -0.523 6.523 9 C -0.103 4.103 10 C -0.063 4.063 11 C -0.105 4.105 12 C -0.119 4.119 13 C -0.122 4.122 14 C -0.120 4.120 15 C -0.105 4.105 16 C 0.526 3.474 17 O -0.565 6.565 18 N -0.632 5.632 19 C 0.102 3.898 20 C 0.036 3.964 21 C -0.520 4.520 22 H 0.063 0.937 23 C 0.069 3.931 24 N -0.884 5.884 25 Si 0.894 3.106 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.283 1.283 29 C 0.096 3.904 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.407 0.593 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.264 0.736 49 H 0.075 0.925 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.054 -16.353 -4.100 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.115 4.115 3 C -0.211 4.211 4 C 0.030 3.970 5 H 0.123 0.877 6 N -0.368 5.368 7 C 0.301 3.699 8 O -0.398 6.398 9 C -0.143 4.143 10 C -0.064 4.064 11 C -0.123 4.123 12 C -0.137 4.137 13 C -0.140 4.140 14 C -0.138 4.138 15 C -0.123 4.123 16 C 0.314 3.686 17 O -0.446 6.446 18 N -0.364 5.364 19 C -0.019 4.019 20 C 0.017 3.983 21 C -0.558 4.558 22 H 0.082 0.918 23 C -0.135 4.135 24 N -0.521 5.521 25 Si 0.722 3.278 26 H -0.196 1.196 27 H -0.209 1.209 28 H -0.209 1.209 29 C -0.026 4.026 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.243 0.757 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.093 0.907 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.428 -16.124 -4.215 21.403 hybrid contribution 0.567 0.263 0.698 0.937 sum -12.861 -15.861 -3.517 20.721 Atomic orbital electron populations 1.21846 0.93710 1.01905 1.01675 1.21407 0.96893 0.96707 0.96483 1.21994 1.02137 0.94547 1.02447 1.20889 0.92071 0.82869 1.01203 0.87749 1.45803 1.17119 1.08949 1.64887 1.20435 0.81301 0.90677 0.77525 1.90755 1.51872 1.52437 1.44730 1.20681 0.95272 0.94415 1.03922 1.19260 0.93544 0.99666 0.93881 1.20999 0.97375 0.99398 0.94500 1.21100 0.92590 1.00368 0.99681 1.21136 0.98754 1.00317 0.93822 1.21088 0.96902 1.00264 0.95563 1.20968 0.92286 0.99484 0.99542 1.20080 0.89129 0.79818 0.79560 1.90620 1.66118 1.41779 1.46094 1.50472 1.11430 1.26675 1.47856 1.23551 0.82425 0.97405 0.98547 1.20487 0.89728 0.89362 0.98726 1.20990 1.27717 0.97668 1.09436 0.91846 1.25013 0.94660 0.97184 0.96654 1.69946 1.32853 1.11825 1.37471 0.86502 0.79090 0.79577 0.82665 1.19606 1.20870 1.20888 1.23947 1.02309 0.81958 0.94355 0.91807 0.93297 0.92796 0.90832 0.91638 0.92261 0.91603 0.75718 0.87872 0.87867 0.86228 0.86128 0.86269 0.86172 0.86292 0.91927 0.90658 0.91601 0.92649 0.90683 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 7.78 37.16 0.29 -1.56 16 2 C -0.09 -1.39 2.70 -90.61 -0.24 -1.63 16 3 C -0.15 -2.37 7.88 37.16 0.29 -2.07 16 4 C 0.14 2.17 2.11 -69.09 -0.15 2.02 16 5 H 0.10 1.80 7.18 -51.93 -0.37 1.43 16 6 N -0.71 -9.45 5.00 -54.93 -0.27 -9.73 16 7 C 0.51 6.59 6.34 -10.98 -0.07 6.52 16 8 O -0.52 -8.43 13.17 5.56 0.07 -8.36 16 9 C -0.10 -0.95 5.83 -29.04 -0.17 -1.12 16 10 C -0.06 -0.67 4.37 -104.62 -0.46 -1.12 16 11 C -0.10 -1.10 9.70 -39.59 -0.38 -1.48 16 12 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 13 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 14 C -0.12 -1.13 10.05 -39.59 -0.40 -1.53 16 15 C -0.10 -1.06 9.70 -39.58 -0.38 -1.44 16 16 C 0.53 9.71 5.98 -10.99 -0.07 9.65 16 17 O -0.57 -11.52 16.96 5.56 0.09 -11.43 16 18 N -0.63 -12.25 2.98 -178.42 -0.53 -12.78 16 19 C 0.10 2.05 8.39 -2.98 -0.02 2.02 16 20 C 0.04 0.81 3.62 -90.84 -0.33 0.49 16 21 C -0.52 -12.92 8.77 -34.44 -0.30 -13.22 16 22 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 23 C 0.07 1.75 5.46 -17.83 -0.10 1.65 16 24 N -0.88 -23.54 13.27 55.43 0.74 -22.81 16 25 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 C 0.10 1.96 7.35 -2.97 -0.02 1.94 16 30 H 0.06 0.97 7.78 -51.93 -0.40 0.57 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.74 5.67 -51.93 -0.29 0.45 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.14 6.21 -51.93 -0.32 0.82 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.05 6.76 -51.93 -0.35 0.70 16 37 H 0.41 4.90 7.95 -40.82 -0.32 4.57 16 38 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.08 1.46 8.09 -51.93 -0.42 1.04 16 47 H 0.07 1.62 8.13 -51.93 -0.42 1.20 16 48 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 49 H 0.07 1.55 8.09 -51.93 -0.42 1.13 16 50 H 0.07 1.45 5.78 -51.93 -0.30 1.15 16 LS Contribution 405.15 15.07 6.11 6.11 Total: -1.00 -29.64 405.15 -9.95 -39.59 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.82 Total: 8.51 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -3.31 Total: -3.95 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.07 Total: -45.31 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.17 Total: -19.79 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.64 -9.95 -39.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034663.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.407 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds