Wall clock time and date at job start Wed Apr 1 2020 03:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47086 * 2 1 4 4 C 1.50706 * 109.46683 * 240.00012 * 2 1 3 5 5 H 1.07996 * 119.99707 * 239.99491 * 4 2 1 6 6 C 1.37877 * 119.99665 * 60.00235 * 4 2 1 7 7 N 1.31508 * 120.00620 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99596 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47627 * 59.99866 * 8 6 4 10 10 H 1.48507 * 109.47152 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46993 * 299.99278 * 8 6 4 12 12 C 1.52992 * 109.47416 * 120.00223 * 2 1 3 13 13 N 1.46499 * 109.47281 * 299.99825 * 12 2 1 14 14 C 1.34779 * 120.00465 * 179.97438 * 13 12 2 15 15 O 1.21285 * 119.99598 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99927 * 180.02562 * 14 13 12 17 17 H 1.09006 * 110.91462 * 297.54792 * 16 14 13 18 18 C 1.55450 * 111.11208 * 173.55940 * 16 14 13 19 19 C 1.54331 * 102.96316 * 206.46211 * 18 16 14 20 20 N 1.47018 * 107.27283 * 22.19058 * 19 18 16 21 21 C 1.34779 * 125.64616 * 181.04030 * 20 19 18 22 22 O 1.21556 * 119.99649 * 174.39453 * 21 20 19 23 23 C 1.47839 * 120.00111 * 354.39412 * 21 20 19 24 24 C 1.39576 * 120.14391 * 6.99467 * 23 21 20 25 25 C 1.37960 * 119.84997 * 179.79168 * 24 23 21 26 26 C 1.38362 * 120.14671 * 0.49227 * 25 24 23 27 27 C 1.38353 * 120.28954 * 359.73831 * 26 25 24 28 28 C 1.37959 * 120.15098 * 0.02599 * 27 26 25 29 29 C 1.47423 * 108.70363 * 1.06119 * 20 19 18 30 30 H 1.09000 * 109.46590 * 299.99839 * 1 2 3 31 31 H 1.09002 * 109.47504 * 59.99730 * 1 2 3 32 32 H 1.09000 * 109.47320 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47089 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47258 * 299.99941 * 3 2 1 35 35 H 1.08998 * 109.47454 * 60.00065 * 3 2 1 36 36 H 0.96998 * 120.00383 * 180.02562 * 7 6 4 37 37 H 1.08994 * 109.47501 * 179.97438 * 12 2 1 38 38 H 1.09000 * 109.47046 * 59.99624 * 12 2 1 39 39 H 0.97010 * 120.00077 * 359.97438 * 13 12 2 40 40 H 1.08996 * 110.70952 * 88.09281 * 18 16 14 41 41 H 1.08989 * 110.85786 * 324.90154 * 18 16 14 42 42 H 1.09003 * 109.88200 * 262.76892 * 19 18 16 43 43 H 1.08997 * 110.00882 * 141.68467 * 19 18 16 44 44 H 1.07999 * 120.07626 * 0.02562 * 24 23 21 45 45 H 1.07998 * 119.92394 * 180.23450 * 25 24 23 46 46 H 1.08000 * 119.85545 * 179.76802 * 26 25 24 47 47 H 1.08006 * 119.92469 * 180.02562 * 27 26 25 48 48 H 1.07995 * 120.07407 * 179.97438 * 28 27 26 49 49 H 1.08991 * 110.37165 * 94.71023 * 29 20 19 50 50 H 1.09007 * 110.36558 * 216.92637 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3211 -1.1203 -4.0080 9 1 1.8255 -2.5202 -4.0078 10 1 1.8256 -0.4205 -5.2205 11 1 3.8060 -1.1209 -4.0083 12 6 2.0401 -0.7212 1.2491 13 7 1.5518 -0.0307 2.4454 14 6 1.8771 -0.4915 3.6695 15 8 2.5743 -1.4776 3.7807 16 6 1.3743 0.2186 4.8999 17 1 1.7596 1.2373 4.9461 18 6 1.7337 -0.5723 6.1890 19 6 0.6329 -0.1382 7.1797 20 7 -0.5050 0.3448 6.3838 21 6 -1.6598 0.8319 6.8795 22 8 -2.4945 1.2982 6.1289 23 6 -1.9113 0.7989 8.3360 24 6 -0.9011 0.4006 9.2129 25 6 -1.1410 0.3763 10.5712 26 6 -2.3829 0.7358 11.0640 27 6 -3.3900 1.1270 10.1998 28 6 -3.1618 1.1604 8.8397 29 6 -0.1738 0.2076 4.9539 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.7081 1.1609 -3.4844 37 1 3.1300 -0.7217 1.2489 38 1 1.6767 -1.7489 1.2491 39 1 0.9944 0.7583 2.3564 40 1 2.7186 -0.2838 6.5562 41 1 1.6898 -1.6465 6.0101 42 1 1.0044 0.6624 7.8193 43 1 0.3247 -0.9871 7.7901 44 1 0.0674 0.1157 8.8292 45 1 -0.3591 0.0719 11.2511 46 1 -2.5668 0.7114 12.1280 47 1 -4.3571 1.4068 10.5910 48 1 -3.9490 1.4656 8.1662 49 1 -0.5602 -0.7338 4.5635 50 1 -0.5790 1.0468 4.3884 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600002006.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:31 Heat of formation + Delta-G solvation = -26.500384 kcal Electronic energy + Delta-G solvation = -29818.553097 eV Core-core repulsion = 25811.294564 eV Total energy + Delta-G solvation = -4007.258533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.96753 -39.65186 -38.52225 -37.36194 -36.30855 -33.39186 -32.74492 -31.35271 -31.13665 -30.87974 -29.32981 -25.91097 -25.73479 -25.38611 -24.84193 -23.16318 -22.80288 -21.96652 -20.22571 -19.85193 -18.81130 -17.76100 -17.51308 -16.78799 -16.25215 -15.90619 -15.57046 -15.31326 -15.09017 -14.84484 -14.57838 -14.52409 -14.17924 -13.94338 -13.73676 -13.36783 -13.19929 -13.09627 -12.91595 -12.75824 -12.49946 -12.28580 -12.16474 -11.74929 -11.49619 -11.36333 -11.20084 -11.11818 -10.94098 -10.85470 -10.73574 -10.39714 -10.22776 -10.17441 -9.64931 -9.63569 -9.38696 -9.36792 -9.27599 -8.94512 -8.80842 -8.50033 -8.34610 -6.02472 -4.12933 0.50506 0.97887 2.54152 2.57475 2.92355 3.29618 3.34244 3.37022 3.50849 3.61516 4.00018 4.20620 4.35107 4.39685 4.53366 4.57700 4.68351 4.69436 4.88776 4.95739 5.00436 5.05593 5.12133 5.24074 5.29532 5.40106 5.52139 5.58684 5.59784 5.70680 5.81265 5.93994 5.96484 6.04473 6.06705 6.19996 6.29310 6.49027 6.49629 6.73476 6.81743 6.90546 6.97766 7.00224 7.16575 7.33860 7.54742 7.68543 7.86893 7.97213 8.00145 8.13212 8.36922 8.58775 8.87348 9.52895 10.98813 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024791 B = 0.002021 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.153139 B =13849.427567 C =14640.316742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.712 5.712 14 C 0.516 3.484 15 O -0.547 6.547 16 C -0.126 4.126 17 H 0.111 0.889 18 C -0.113 4.113 19 C 0.088 3.912 20 N -0.612 5.612 21 C 0.573 3.427 22 O -0.532 6.532 23 C -0.130 4.130 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.097 4.097 27 C -0.130 4.130 28 C -0.061 4.061 29 C 0.117 3.883 30 H 0.006 0.994 31 H 0.086 0.914 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.086 0.914 35 H 0.006 0.994 36 H 0.261 0.739 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.161 0.839 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.129 0.871 48 H 0.135 0.865 49 H 0.078 0.922 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.930 1.691 26.828 27.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.362 5.362 14 C 0.300 3.700 15 O -0.426 6.426 16 C -0.149 4.149 17 H 0.129 0.871 18 C -0.151 4.151 19 C -0.034 4.034 20 N -0.346 5.346 21 C 0.363 3.637 22 O -0.409 6.409 23 C -0.133 4.133 24 C -0.142 4.142 25 C -0.148 4.148 26 C -0.116 4.116 27 C -0.148 4.148 28 C -0.079 4.079 29 C -0.005 4.005 30 H 0.025 0.975 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.104 0.896 35 H 0.025 0.975 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.234 0.766 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.178 0.822 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.147 0.853 48 H 0.153 0.847 49 H 0.097 0.903 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.040 1.380 26.332 26.676 hybrid contribution 0.064 -0.039 -0.836 0.839 sum -3.976 1.341 25.496 25.839 Atomic orbital electron populations 1.21835 0.97676 0.99210 1.00177 1.18360 0.92844 0.92755 0.90545 1.21833 0.98550 0.98349 1.00136 1.20926 1.31612 1.12125 0.89868 0.92506 1.24883 0.94861 0.94930 0.98864 1.69787 1.36487 1.22705 1.23372 0.86630 0.79196 0.79797 0.82203 1.20293 1.21333 1.20302 1.21750 0.98178 0.95829 0.83375 1.46368 1.52150 1.31710 1.06018 1.19999 0.80940 0.84631 0.84384 1.90681 1.38655 1.26438 1.86791 1.22607 0.95855 1.01727 0.94667 0.87120 1.22647 0.98126 1.02053 0.92281 1.22657 0.86660 0.99208 0.94866 1.48287 1.15518 1.63034 1.07780 1.18010 0.80347 0.77499 0.87877 1.90808 1.44698 1.45408 1.60023 1.19869 0.95862 1.05102 0.92464 1.22802 1.00776 0.96880 0.93755 1.21187 0.97440 1.00839 0.95292 1.21423 0.93309 0.96795 1.00026 1.21172 0.99739 1.00849 0.93033 1.21319 0.95908 0.95125 0.95591 1.22184 0.92967 1.03510 0.81887 0.97456 0.89569 0.95424 0.95443 0.89567 0.97510 0.92914 0.92609 0.92612 0.76559 0.89113 0.88787 0.90060 0.89918 0.82191 0.85405 0.85677 0.85322 0.84666 0.90350 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.51 -13.13 8.01 -34.44 -0.28 -13.41 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.54 9.35 55.43 0.52 -23.02 16 8 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.13 2.69 4.50 -4.05 -0.02 2.67 16 13 N -0.71 -11.96 4.91 -60.30 -0.30 -12.26 16 14 C 0.52 8.06 7.16 -10.99 -0.08 7.98 16 15 O -0.55 -10.40 15.81 5.55 0.09 -10.31 16 16 C -0.13 -1.41 3.45 -89.47 -0.31 -1.72 16 17 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 18 C -0.11 -1.02 6.04 -24.73 -0.15 -1.17 16 19 C 0.09 0.67 4.87 -3.06 -0.01 0.66 16 20 N -0.61 -6.70 3.33 -175.73 -0.58 -7.28 16 21 C 0.57 7.33 7.81 -12.33 -0.10 7.24 16 22 O -0.53 -8.72 16.60 5.32 0.09 -8.63 16 23 C -0.13 -1.34 5.87 -104.97 -0.62 -1.96 16 24 C -0.12 -0.96 8.61 -39.18 -0.34 -1.30 16 25 C -0.13 -0.83 10.03 -39.64 -0.40 -1.22 16 26 C -0.10 -0.61 10.04 -39.49 -0.40 -1.01 16 27 C -0.13 -0.94 10.03 -39.64 -0.40 -1.34 16 28 C -0.06 -0.58 9.59 -39.18 -0.38 -0.96 16 29 C 0.12 1.38 6.35 -2.53 -0.02 1.37 16 30 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 31 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 35 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 36 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.40 6.17 6.16 -40.82 -0.25 5.92 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.99 7.51 -51.94 -0.39 0.60 16 42 H 0.08 0.46 6.74 -51.93 -0.35 0.11 16 43 H 0.08 0.52 6.73 -51.93 -0.35 0.17 16 44 H 0.16 0.93 2.74 -57.79 -0.16 0.78 16 45 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 46 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 47 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 48 H 0.14 1.33 7.67 -52.49 -0.40 0.93 16 49 H 0.08 1.00 8.03 -51.93 -0.42 0.58 16 50 H 0.09 1.12 7.98 -51.93 -0.41 0.70 16 LS Contribution 393.55 15.07 5.93 5.93 Total: -1.00 -31.36 393.55 -9.75 -41.11 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -7.42 Total: 5.40 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -3.05 Total: -6.59 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -0.36 Total: -42.56 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.18 Total: -18.94 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.36 -9.75 -41.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600002006.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.605 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds