Wall clock time and date at job start Wed Apr 1 2020 03:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47086 * 2 1 4 4 C 1.50706 * 109.46683 * 240.00012 * 2 1 3 5 5 H 1.07996 * 119.99707 * 239.99491 * 4 2 1 6 6 C 1.37877 * 119.99665 * 60.00235 * 4 2 1 7 7 N 1.31508 * 120.00620 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99596 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47627 * 59.99866 * 8 6 4 10 10 H 1.48507 * 109.47152 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46993 * 299.99278 * 8 6 4 12 12 C 1.52992 * 109.47416 * 120.00223 * 2 1 3 13 13 N 1.46499 * 109.47281 * 299.99825 * 12 2 1 14 14 C 1.34779 * 120.00465 * 179.97438 * 13 12 2 15 15 O 1.21285 * 119.99598 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99927 * 180.02562 * 14 13 12 17 17 H 1.09006 * 110.91462 * 297.54792 * 16 14 13 18 18 C 1.55450 * 111.11208 * 173.55940 * 16 14 13 19 19 C 1.54331 * 102.96316 * 206.46211 * 18 16 14 20 20 N 1.47018 * 107.27283 * 22.19058 * 19 18 16 21 21 C 1.34779 * 125.64616 * 181.04030 * 20 19 18 22 22 O 1.21556 * 119.99649 * 174.39453 * 21 20 19 23 23 C 1.47839 * 120.00111 * 354.39412 * 21 20 19 24 24 C 1.39576 * 120.14391 * 6.99467 * 23 21 20 25 25 C 1.37960 * 119.84997 * 179.79168 * 24 23 21 26 26 C 1.38362 * 120.14671 * 0.49227 * 25 24 23 27 27 C 1.38353 * 120.28954 * 359.73831 * 26 25 24 28 28 C 1.37959 * 120.15098 * 0.02599 * 27 26 25 29 29 C 1.47423 * 108.70363 * 1.06119 * 20 19 18 30 30 H 1.09000 * 109.46590 * 299.99839 * 1 2 3 31 31 H 1.09002 * 109.47504 * 59.99730 * 1 2 3 32 32 H 1.09000 * 109.47320 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47089 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47258 * 299.99941 * 3 2 1 35 35 H 1.08998 * 109.47454 * 60.00065 * 3 2 1 36 36 H 0.96998 * 120.00383 * 180.02562 * 7 6 4 37 37 H 1.08994 * 109.47501 * 179.97438 * 12 2 1 38 38 H 1.09000 * 109.47046 * 59.99624 * 12 2 1 39 39 H 0.97010 * 120.00077 * 359.97438 * 13 12 2 40 40 H 1.08996 * 110.70952 * 88.09281 * 18 16 14 41 41 H 1.08989 * 110.85786 * 324.90154 * 18 16 14 42 42 H 1.09003 * 109.88200 * 262.76892 * 19 18 16 43 43 H 1.08997 * 110.00882 * 141.68467 * 19 18 16 44 44 H 1.07999 * 120.07626 * 0.02562 * 24 23 21 45 45 H 1.07998 * 119.92394 * 180.23450 * 25 24 23 46 46 H 1.08000 * 119.85545 * 179.76802 * 26 25 24 47 47 H 1.08006 * 119.92469 * 180.02562 * 27 26 25 48 48 H 1.07995 * 120.07407 * 179.97438 * 28 27 26 49 49 H 1.08991 * 110.37165 * 94.71023 * 29 20 19 50 50 H 1.09007 * 110.36558 * 216.92637 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3211 -1.1203 -4.0080 9 1 1.8255 -2.5202 -4.0078 10 1 1.8256 -0.4205 -5.2205 11 1 3.8060 -1.1209 -4.0083 12 6 2.0401 -0.7212 1.2491 13 7 1.5518 -0.0307 2.4454 14 6 1.8771 -0.4915 3.6695 15 8 2.5743 -1.4776 3.7807 16 6 1.3743 0.2186 4.8999 17 1 1.7596 1.2373 4.9461 18 6 1.7337 -0.5723 6.1890 19 6 0.6329 -0.1382 7.1797 20 7 -0.5050 0.3448 6.3838 21 6 -1.6598 0.8319 6.8795 22 8 -2.4945 1.2982 6.1289 23 6 -1.9113 0.7989 8.3360 24 6 -0.9011 0.4006 9.2129 25 6 -1.1410 0.3763 10.5712 26 6 -2.3829 0.7358 11.0640 27 6 -3.3900 1.1270 10.1998 28 6 -3.1618 1.1604 8.8397 29 6 -0.1738 0.2076 4.9539 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.7081 1.1609 -3.4844 37 1 3.1300 -0.7217 1.2489 38 1 1.6767 -1.7489 1.2491 39 1 0.9944 0.7583 2.3564 40 1 2.7186 -0.2838 6.5562 41 1 1.6898 -1.6465 6.0101 42 1 1.0044 0.6624 7.8193 43 1 0.3247 -0.9871 7.7901 44 1 0.0674 0.1157 8.8292 45 1 -0.3591 0.0719 11.2511 46 1 -2.5668 0.7114 12.1280 47 1 -4.3571 1.4068 10.5910 48 1 -3.9490 1.4656 8.1662 49 1 -0.5602 -0.7338 4.5635 50 1 -0.5790 1.0468 4.3884 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600002006.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:29 Heat of formation + Delta-G solvation = -44.842533 kcal Electronic energy + Delta-G solvation = -29819.348472 eV Core-core repulsion = 25811.294564 eV Total energy + Delta-G solvation = -4008.053909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.84407 -40.79887 -39.29841 -38.50243 -37.87457 -35.02770 -33.67326 -32.66783 -31.92514 -31.79577 -30.19712 -27.57830 -27.51304 -26.95560 -26.02003 -23.96013 -23.51456 -22.80016 -21.08777 -21.00794 -20.58357 -18.73851 -18.47413 -17.79288 -17.43607 -17.12122 -16.72448 -16.66864 -16.33688 -16.22219 -15.54025 -15.42245 -15.06847 -14.88504 -14.75078 -14.59965 -14.39253 -14.30837 -13.99612 -13.97299 -13.70599 -13.44709 -13.18234 -13.09910 -12.89989 -12.67956 -12.63370 -12.42100 -12.27122 -12.25557 -12.13990 -11.89972 -11.58862 -11.49223 -11.29290 -11.07747 -10.84633 -10.68570 -10.40242 -10.04975 -9.95238 -9.92750 -9.73986 -8.02282 -6.18355 -0.13562 0.43900 1.43643 1.44805 1.51182 1.52633 1.75330 1.82779 2.31350 2.49342 2.89914 3.19392 3.21164 3.39601 3.60140 3.81701 3.95753 4.04336 4.12355 4.14868 4.19070 4.28421 4.43384 4.48168 4.51188 4.51875 4.56831 4.63252 4.70426 4.73660 4.82183 4.99290 5.00200 5.04528 5.06455 5.09208 5.09849 5.18473 5.21250 5.36003 5.39407 5.45432 5.53500 5.57712 5.65917 5.66701 5.98231 6.13643 6.21133 6.32102 6.42578 6.62949 6.86093 6.95931 7.26624 7.49342 8.96298 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024791 B = 0.002021 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.153139 B =13849.427567 C =14640.316742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.527 4.527 5 H 0.046 0.954 6 C 0.026 3.974 7 N -0.900 5.900 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.275 1.275 12 C 0.148 3.852 13 N -0.711 5.711 14 C 0.518 3.482 15 O -0.580 6.580 16 C -0.114 4.114 17 H 0.136 0.864 18 C -0.108 4.108 19 C 0.088 3.912 20 N -0.610 5.610 21 C 0.566 3.434 22 O -0.584 6.584 23 C -0.155 4.155 24 C -0.122 4.122 25 C -0.128 4.128 26 C -0.093 4.093 27 C -0.133 4.133 28 C -0.083 4.083 29 C 0.116 3.884 30 H 0.033 0.967 31 H 0.061 0.939 32 H 0.017 0.983 33 H 0.021 0.979 34 H 0.060 0.940 35 H 0.036 0.964 36 H 0.260 0.740 37 H 0.043 0.957 38 H 0.039 0.961 39 H 0.407 0.593 40 H 0.114 0.886 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.180 0.820 45 H 0.161 0.839 46 H 0.155 0.845 47 H 0.147 0.853 48 H 0.117 0.883 49 H 0.063 0.937 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 1.844 30.281 30.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.049 3.951 3 C -0.178 4.178 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.174 4.174 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.024 3.976 13 N -0.361 5.361 14 C 0.305 3.695 15 O -0.460 6.460 16 C -0.136 4.136 17 H 0.154 0.846 18 C -0.146 4.146 19 C -0.033 4.033 20 N -0.343 5.343 21 C 0.358 3.642 22 O -0.466 6.466 23 C -0.158 4.158 24 C -0.140 4.140 25 C -0.145 4.145 26 C -0.111 4.111 27 C -0.151 4.151 28 C -0.103 4.103 29 C -0.007 4.007 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.244 0.756 40 H 0.133 0.867 41 H 0.096 0.904 42 H 0.130 0.870 43 H 0.120 0.880 44 H 0.196 0.804 45 H 0.178 0.822 46 H 0.173 0.827 47 H 0.165 0.835 48 H 0.135 0.865 49 H 0.081 0.919 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.042 1.530 29.816 30.009 hybrid contribution -0.249 -0.122 -1.827 1.848 sum -3.291 1.408 27.989 28.217 Atomic orbital electron populations 1.21679 0.97425 0.98564 1.00237 1.18363 0.92985 0.93127 0.90586 1.21667 0.98045 0.97818 1.00316 1.21237 1.31693 1.12165 0.91468 0.93538 1.25485 0.95204 0.95629 1.01090 1.69906 1.36945 1.23358 1.23632 0.85811 0.78676 0.78756 0.79525 1.20301 1.20996 1.20091 1.21268 0.97207 0.95012 0.84124 1.46232 1.52450 1.31876 1.05580 1.20691 0.79847 0.84059 0.84929 1.90669 1.40113 1.27955 1.87282 1.22551 0.95048 1.02770 0.93210 0.84633 1.22680 0.99866 1.00772 0.91247 1.22932 0.84920 1.00943 0.94522 1.48332 1.15960 1.62305 1.07668 1.18531 0.80058 0.76739 0.88891 1.90767 1.46422 1.47972 1.61409 1.19819 0.97154 1.07598 0.91193 1.23011 1.00679 0.96145 0.94128 1.21614 0.98281 0.99570 0.95070 1.21850 0.92828 0.94974 1.01400 1.21424 1.01155 1.00496 0.92053 1.21361 0.95687 0.96508 0.96695 1.22067 0.93388 1.02414 0.82815 0.94762 0.92026 0.96358 0.96022 0.92072 0.94544 0.93081 0.93861 0.94273 0.75620 0.86746 0.90390 0.86995 0.87983 0.80363 0.82183 0.82684 0.83515 0.86502 0.91867 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.08 71.98 0.58 -4.91 16 2 C 0.05 2.31 0.50 -52.93 -0.03 2.28 16 3 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 4 C -0.53 -27.81 8.01 25.60 0.21 -27.61 16 5 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 6 C 0.03 1.36 5.15 84.66 0.44 1.79 16 7 N -0.90 -48.52 9.35 21.45 0.20 -48.32 16 8 Si 0.95 42.81 29.54 68.60 2.03 44.84 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 12 C 0.15 6.13 4.50 86.38 0.39 6.52 16 13 N -0.71 -23.47 4.91 -463.08 -2.27 -25.74 16 14 C 0.52 15.73 7.16 87.66 0.63 16.35 16 15 O -0.58 -21.78 15.81 -3.05 -0.05 -21.82 16 16 C -0.11 -2.33 3.45 -10.05 -0.03 -2.36 16 17 H 0.14 2.18 8.14 -2.38 -0.02 2.16 16 18 C -0.11 -1.64 6.04 31.89 0.19 -1.45 16 19 C 0.09 1.05 4.87 86.73 0.42 1.47 16 20 N -0.61 -12.66 3.33 -828.16 -2.75 -15.41 16 21 C 0.57 14.59 7.81 86.78 0.68 15.27 16 22 O -0.58 -20.19 16.60 -3.89 -0.06 -20.26 16 23 C -0.15 -3.07 5.87 -20.09 -0.12 -3.19 16 24 C -0.12 -1.51 8.61 22.53 0.19 -1.31 16 25 C -0.13 -1.09 10.03 22.23 0.22 -0.87 16 26 C -0.09 -0.82 10.04 22.33 0.22 -0.60 16 27 C -0.13 -1.70 10.03 22.23 0.22 -1.48 16 28 C -0.08 -1.61 9.59 22.53 0.22 -1.39 16 29 C 0.12 2.69 6.35 86.85 0.55 3.24 16 30 H 0.03 1.32 6.86 -2.39 -0.02 1.30 16 31 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 32 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 3.04 6.07 -2.38 -0.01 3.03 16 35 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 36 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 37 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.41 12.13 6.16 -92.70 -0.57 11.56 16 40 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 1.49 7.51 -2.39 -0.02 1.48 16 42 H 0.11 0.75 6.74 -2.39 -0.02 0.73 16 43 H 0.10 0.90 6.73 -2.39 -0.02 0.89 16 44 H 0.18 1.33 2.74 -7.89 -0.02 1.31 16 45 H 0.16 0.35 8.06 -2.91 -0.02 0.33 16 46 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 47 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 48 H 0.12 2.55 7.67 -2.91 -0.02 2.53 16 49 H 0.06 1.64 8.03 -2.39 -0.02 1.62 16 50 H 0.08 2.03 7.98 -2.38 -0.02 2.01 16 Total: -1.00 -71.26 393.55 3.03 -68.24 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.38 Total: 21.48 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 5.57 Total: -3.00 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -4.83 Total: -89.47 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -0.11 Total: -42.08 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -71.26 3.03 -68.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600002006.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.396 kcal (2) G-P(sol) polarization free energy of solvation -71.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds