Wall clock time and date at job start Wed Apr 1 2020 05:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.46971 * 2 1 4 4 C 1.50700 * 109.46715 * 120.00067 * 2 1 3 5 5 O 1.21279 * 120.00085 * 353.29114 * 4 2 1 6 6 N 1.34774 * 119.99915 * 173.28689 * 4 2 1 7 7 C 1.46931 * 120.62827 * 356.62527 * 6 4 2 8 8 C 1.53191 * 108.89017 * 233.67130 * 7 6 4 9 9 C 1.53035 * 109.31461 * 305.29226 * 8 7 6 10 10 N 1.46504 * 109.46323 * 181.38586 * 9 8 7 11 11 C 1.34771 * 120.00073 * 154.99780 * 10 9 8 12 12 O 1.21603 * 120.00277 * 0.02562 * 11 10 9 13 13 C 1.47440 * 119.99959 * 179.97438 * 11 10 9 14 14 C 1.39223 * 120.28137 * 355.22217 * 13 11 10 15 15 C 1.38220 * 120.09492 * 179.97438 * 14 13 11 16 16 C 1.38827 * 120.67188 * 0.02562 * 15 14 13 17 17 C 1.37592 * 120.57222 * 359.97438 * 16 15 14 18 18 C 1.40705 * 119.88145 * 359.73743 * 17 16 15 19 19 C 1.40896 * 120.32951 * 180.25155 * 18 17 16 20 20 H 1.07997 * 119.99878 * 216.38161 * 19 18 17 21 21 C 1.40274 * 119.99427 * 36.38756 * 19 18 17 22 22 N 1.30621 * 120.00232 * 8.67034 * 21 19 18 23 23 Si 1.86800 * 119.99726 * 188.66408 * 21 19 18 24 24 H 1.48501 * 109.46988 * 60.00138 * 23 21 19 25 25 H 1.48499 * 109.47371 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47145 * 300.00170 * 23 21 19 27 27 C 1.53044 * 109.53701 * 61.36806 * 9 8 7 28 28 C 1.47203 * 120.81877 * 176.76057 * 6 4 2 29 29 H 1.08996 * 109.47179 * 300.00091 * 1 2 3 30 30 H 1.08998 * 109.46582 * 60.00256 * 1 2 3 31 31 H 1.09003 * 109.46881 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46820 * 239.99674 * 2 1 3 33 33 H 1.08999 * 109.47613 * 305.30894 * 3 2 1 34 34 H 1.09003 * 109.47208 * 65.30796 * 3 2 1 35 35 H 1.09000 * 109.47141 * 185.30535 * 3 2 1 36 36 H 1.09001 * 109.58561 * 113.81510 * 7 6 4 37 37 H 1.08997 * 109.58558 * 353.52904 * 7 6 4 38 38 H 1.08997 * 109.49985 * 65.24710 * 8 7 6 39 39 H 1.09009 * 109.49621 * 185.34260 * 8 7 6 40 40 H 1.09000 * 109.46345 * 301.34491 * 9 8 7 41 41 H 0.96997 * 119.99683 * 335.00265 * 10 9 8 42 42 H 1.08008 * 119.95601 * 359.95446 * 14 13 11 43 43 H 1.08001 * 119.66354 * 179.97438 * 15 14 13 44 44 H 1.08005 * 119.71483 * 179.97438 * 16 15 14 45 45 H 1.07998 * 120.06091 * 179.97438 * 17 16 15 46 46 H 0.97004 * 120.00172 * 180.02562 * 22 21 19 47 47 H 1.08995 * 109.49590 * 58.58668 * 27 9 8 48 48 H 1.09003 * 109.49681 * 178.64913 * 27 9 8 49 49 H 1.09006 * 109.52938 * 6.54174 * 28 6 4 50 50 H 1.08997 * 109.67749 * 246.23758 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2509 -1.0639 2.0880 6 7 3.3498 -0.9531 1.3779 7 6 4.3000 -0.5975 0.3151 8 6 5.1266 -1.8357 -0.0458 9 6 5.7830 -2.3926 1.2195 10 7 6.6010 -3.5575 0.8729 11 6 7.6388 -3.9097 1.6574 12 8 7.8958 -3.2608 2.6532 13 6 8.4617 -5.0823 1.3088 14 6 8.1137 -5.8879 0.2280 15 6 8.8882 -6.9860 -0.0957 16 6 10.0175 -7.3002 0.6482 17 6 10.3868 -6.5229 1.7218 18 6 9.6189 -5.3961 2.0686 19 6 9.9914 -4.5906 3.1629 20 1 9.2323 -4.1494 3.7918 21 6 11.3483 -4.3617 3.4354 22 7 12.2599 -4.7501 2.5844 23 14 11.8513 -3.5011 5.0153 24 1 11.3795 -4.2910 6.1810 25 1 13.3306 -3.3811 5.0641 26 1 11.2436 -2.1468 5.0564 27 6 4.6997 -2.8091 2.2171 28 6 3.8683 -1.5819 2.6037 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6011 1.9830 -0.8386 34 1 1.7564 1.9281 0.9337 35 1 3.1259 1.4439 -0.0950 36 1 4.9619 0.1940 0.6665 37 1 3.7538 -0.2540 -0.5634 38 1 4.4755 -2.5935 -0.4816 39 1 5.8982 -1.5610 -0.7652 40 1 6.4147 -1.6261 1.6684 41 1 6.3958 -4.0752 0.0787 42 1 7.2370 -5.6548 -0.3583 43 1 8.6116 -7.6065 -0.9353 44 1 10.6113 -8.1621 0.3818 45 1 11.2667 -6.7751 2.2950 46 1 13.1982 -4.5921 2.7731 47 1 4.0526 -3.5577 1.7601 48 1 5.1674 -3.2277 3.1083 49 1 3.0352 -1.8894 3.2360 50 1 4.4943 -0.8718 3.1440 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600991856.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:18 Heat of formation + Delta-G solvation = -63.056118 kcal Electronic energy + Delta-G solvation = -30264.606965 eV Core-core repulsion = 26255.763256 eV Total energy + Delta-G solvation = -4008.843709 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.60711 -39.14719 -37.65731 -36.54217 -34.95381 -34.22446 -33.60043 -31.28076 -31.17029 -29.88495 -29.25853 -27.46583 -25.81937 -25.09983 -23.81623 -22.87145 -22.01175 -20.98058 -20.40965 -19.48820 -18.93576 -17.72897 -17.37190 -16.26265 -16.12374 -15.65332 -15.57472 -15.18430 -14.55556 -14.40921 -14.29453 -14.23166 -13.93094 -13.78418 -13.47553 -13.09235 -13.04971 -12.72428 -12.69646 -12.60315 -12.45731 -12.29201 -12.20771 -11.75291 -11.63415 -11.48977 -11.40124 -11.30987 -11.13352 -11.12160 -10.82419 -10.70220 -10.62970 -10.52280 -10.13772 -9.81068 -9.69381 -9.26849 -8.86978 -8.42413 -8.37343 -7.61709 -7.35440 -6.80962 -4.41106 2.33212 2.46539 2.79344 2.80465 3.08547 3.14594 3.23360 3.83062 3.96942 4.12407 4.18697 4.48879 4.52905 4.64584 4.66751 4.83962 4.88616 4.97423 5.12925 5.20069 5.26094 5.29245 5.36796 5.40655 5.51246 5.57302 5.58126 5.59980 5.69775 5.79343 5.82287 5.93344 5.94793 5.95746 6.00504 6.12956 6.25421 6.34556 6.43771 6.60655 6.92237 7.06091 7.13178 7.22419 7.23195 7.43710 7.59145 7.85636 7.96944 8.01357 8.15677 8.35240 8.66141 8.81182 8.88665 9.38951 10.15314 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.002547 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.472088 B =10989.115540 C =12087.420221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 C -0.148 4.148 4 C 0.518 3.482 5 O -0.543 6.543 6 N -0.611 5.611 7 C 0.108 3.892 8 C -0.144 4.144 9 C 0.152 3.848 10 N -0.745 5.745 11 C 0.566 3.434 12 O -0.538 6.538 13 C -0.261 4.261 14 C -0.058 4.058 15 C -0.244 4.244 16 C -0.096 4.096 17 C -0.146 4.146 18 C 0.148 3.852 19 C -0.422 4.422 20 H 0.109 0.891 21 C 0.069 3.931 22 N -0.795 5.795 23 Si 0.916 3.084 24 H -0.263 1.263 25 H -0.280 1.280 26 H -0.262 1.262 27 C -0.143 4.143 28 C 0.114 3.886 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.391 0.609 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.115 0.885 46 H 0.282 0.718 47 H 0.064 0.936 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.381 8.918 -7.657 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 C -0.206 4.206 4 C 0.307 3.693 5 O -0.420 6.420 6 N -0.344 5.344 7 C -0.015 4.015 8 C -0.182 4.182 9 C 0.046 3.954 10 N -0.399 5.399 11 C 0.361 3.639 12 O -0.416 6.416 13 C -0.266 4.266 14 C -0.076 4.076 15 C -0.264 4.264 16 C -0.115 4.115 17 C -0.165 4.165 18 C 0.143 3.857 19 C -0.450 4.450 20 H 0.127 0.873 21 C -0.149 4.149 22 N -0.420 5.420 23 Si 0.741 3.259 24 H -0.188 1.188 25 H -0.205 1.205 26 H -0.187 1.187 27 C -0.182 4.182 28 C -0.009 4.009 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.133 0.867 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.103 0.897 49 H 0.110 0.890 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.330 9.217 -6.489 18.232 hybrid contribution 0.458 -0.013 -0.034 0.459 sum -13.872 9.204 -6.524 17.881 Atomic orbital electron populations 1.21613 0.92492 1.02749 1.02118 1.21308 0.98303 0.97381 0.96719 1.21897 1.01702 0.93996 1.02986 1.20698 0.81532 0.78803 0.88305 1.90682 1.54852 1.52395 1.44110 1.48245 1.06501 1.60995 1.18703 1.21840 0.91849 0.97063 0.90758 1.22228 0.99735 0.97916 0.98348 1.20669 0.91433 0.89410 0.93901 1.46062 1.32467 1.31338 1.29998 1.18406 0.78829 0.84454 0.82243 1.90649 1.69424 1.54803 1.26743 1.19473 1.04535 1.00069 1.02499 1.20644 0.96981 0.94866 0.95157 1.20291 1.00102 1.01818 1.04141 1.20804 0.96146 0.98518 0.96040 1.21335 1.01279 0.95146 0.98744 1.17486 0.88358 0.89975 0.89845 1.20236 0.92215 1.23414 1.09175 0.87286 1.26132 0.96474 0.94706 0.97579 1.69703 1.02441 1.36148 1.33748 0.86222 0.77271 0.80805 0.81634 1.18751 1.20527 1.18665 1.22328 0.97330 0.97403 1.01167 1.21663 0.98435 0.94578 0.86190 0.91816 0.92081 0.92122 0.88697 0.91328 0.92042 0.91596 0.90749 0.89109 0.91074 0.89790 0.89572 0.77472 0.89307 0.89113 0.89077 0.86721 0.90697 0.91699 0.89729 0.88975 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 8.51 37.16 0.32 -0.74 16 2 C -0.12 -0.92 2.41 -91.77 -0.22 -1.14 16 3 C -0.15 -0.92 8.83 37.15 0.33 -0.59 16 4 C 0.52 6.01 7.01 -10.99 -0.08 5.93 16 5 O -0.54 -8.38 15.41 5.56 0.09 -8.30 16 6 N -0.61 -6.54 2.98 -172.54 -0.51 -7.05 16 7 C 0.11 0.89 5.06 -3.71 -0.02 0.87 16 8 C -0.14 -1.38 5.55 -26.61 -0.15 -1.53 16 9 C 0.15 2.08 2.42 -67.89 -0.16 1.91 16 10 N -0.75 -12.28 5.03 -54.84 -0.28 -12.55 16 11 C 0.57 12.49 7.69 -12.52 -0.10 12.40 16 12 O -0.54 -13.47 13.20 5.27 0.07 -13.40 16 13 C -0.26 -6.19 5.92 -104.37 -0.62 -6.81 16 14 C -0.06 -1.19 9.52 -39.22 -0.37 -1.57 16 15 C -0.24 -5.09 10.03 -39.37 -0.39 -5.48 16 16 C -0.10 -2.14 10.01 -39.60 -0.40 -2.53 16 17 C -0.15 -3.66 8.61 -38.89 -0.33 -3.99 16 18 C 0.15 3.89 5.48 -106.54 -0.58 3.31 16 19 C -0.42 -11.42 7.76 -37.81 -0.29 -11.71 16 20 H 0.11 3.05 5.76 -52.49 -0.30 2.75 16 21 C 0.07 1.76 5.25 -17.30 -0.09 1.67 16 22 N -0.80 -20.44 11.28 55.56 0.63 -19.81 16 23 Si 0.92 19.50 29.57 -169.99 -5.03 14.48 16 24 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 27 C -0.14 -1.93 5.65 -26.61 -0.15 -2.08 16 28 C 0.11 1.39 6.45 -3.56 -0.02 1.37 16 29 H 0.06 0.58 8.03 -51.93 -0.42 0.16 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.60 7.18 -51.93 -0.37 0.22 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.36 5.88 -51.93 -0.31 0.06 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.53 4.84 -51.93 -0.25 0.28 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.09 1.36 7.58 -51.93 -0.39 0.96 16 41 H 0.39 5.62 6.66 -40.82 -0.27 5.34 16 42 H 0.09 1.50 6.43 -52.48 -0.34 1.17 16 43 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 44 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 45 H 0.11 2.94 6.75 -52.49 -0.35 2.59 16 46 H 0.28 6.63 8.29 -40.82 -0.34 6.29 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 49 H 0.09 1.23 7.02 -51.93 -0.36 0.86 16 50 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -31.38 392.89 -10.03 -41.41 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -7.58 Total: 10.02 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -3.34 Total: -10.72 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: -0.16 Total: -39.41 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.16 Total: -21.70 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.38 -10.03 -41.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600991856.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.650 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds