Wall clock time and date at job start Wed Apr 1 2020 05:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47526 * 2 1 4 4 C 1.50699 * 109.47008 * 120.00064 * 2 1 3 5 5 O 1.21277 * 120.00079 * 239.99174 * 4 2 1 6 6 N 1.34780 * 119.99763 * 59.99596 * 4 2 1 7 7 C 1.43465 * 118.93541 * 179.97438 * 6 4 2 8 8 C 1.53793 * 107.96833 * 273.62815 * 7 6 4 9 9 C 1.47148 * 111.84232 * 281.67646 * 8 7 6 10 10 N 1.48207 * 110.34167 * 58.29469 * 9 8 7 11 11 C 1.34777 * 119.97410 * 102.46913 * 10 9 8 12 12 O 1.21607 * 119.99717 * 354.41601 * 11 10 9 13 13 C 1.47433 * 120.00252 * 174.42578 * 11 10 9 14 14 C 1.39221 * 120.28029 * 305.16697 * 13 11 10 15 15 C 1.38220 * 120.09251 * 180.25469 * 14 13 11 16 16 C 1.38830 * 120.67388 * 0.04151 * 15 14 13 17 17 C 1.37589 * 120.57256 * 359.95679 * 16 15 14 18 18 C 1.40708 * 119.87993 * 0.02562 * 17 16 15 19 19 C 1.40898 * 120.32545 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99700 * 149.65616 * 19 18 17 21 21 C 1.40267 * 119.99896 * 329.64903 * 19 18 17 22 22 N 1.30625 * 120.00332 * 346.82768 * 21 19 18 23 23 Si 1.86799 * 119.99990 * 166.82209 * 21 19 18 24 24 H 1.48505 * 109.47146 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47261 * 120.00153 * 23 21 19 26 26 H 1.48504 * 109.47355 * 240.00331 * 23 21 19 27 27 C 1.43622 * 120.05587 * 282.74038 * 10 9 8 28 28 C 1.48858 * 118.94538 * 359.97438 * 6 4 2 29 29 H 1.08999 * 109.47100 * 59.99605 * 1 2 3 30 30 H 1.09002 * 109.47685 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46965 * 300.00523 * 1 2 3 32 32 H 1.09005 * 109.46499 * 239.99369 * 2 1 3 33 33 H 1.09003 * 109.47102 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.46822 * 299.99928 * 3 2 1 35 35 H 1.08997 * 109.47134 * 60.00173 * 3 2 1 36 36 H 1.09005 * 109.76192 * 154.01110 * 7 6 4 37 37 H 1.09006 * 109.76407 * 33.25130 * 7 6 4 38 38 H 1.09003 * 109.00856 * 161.06593 * 8 7 6 39 39 H 1.09002 * 108.94249 * 42.24358 * 8 7 6 40 40 H 1.08999 * 109.32125 * 298.02778 * 9 8 7 41 41 H 1.08992 * 109.32421 * 178.56013 * 9 8 7 42 42 H 1.07999 * 119.95257 * 0.27920 * 14 13 11 43 43 H 1.08001 * 119.66291 * 179.97438 * 15 14 13 44 44 H 1.08006 * 119.71050 * 179.97438 * 16 15 14 45 45 H 1.08001 * 120.06218 * 180.02562 * 17 16 15 46 46 H 0.96999 * 120.00389 * 179.97438 * 22 21 19 47 47 H 1.09002 * 108.87534 * 211.19513 * 27 10 9 48 48 H 1.08999 * 108.87478 * 329.63173 * 27 10 9 49 49 H 1.08999 * 109.48070 * 260.60422 * 28 6 4 50 50 H 1.09000 * 109.47619 * 20.62340 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -0.1211 2.0287 6 7 1.7066 -2.0008 1.4437 7 6 2.1977 -2.6550 2.6223 8 6 3.5949 -3.2149 2.3068 9 6 3.5220 -4.4626 1.5301 10 7 2.7905 -4.2375 0.2610 11 6 3.4712 -4.1121 -0.8955 12 8 4.6868 -4.0818 -0.8852 13 6 2.7420 -4.0114 -2.1729 14 6 1.8182 -4.9888 -2.5329 15 6 1.1407 -4.8933 -3.7338 16 6 1.3707 -3.8281 -4.5940 17 6 2.2775 -2.8468 -4.2658 18 6 2.9802 -2.9203 -3.0490 19 6 3.9106 -1.9202 -2.7033 20 1 4.0794 -1.6754 -1.6650 21 6 4.6177 -1.2428 -3.7076 22 7 4.6143 -1.7005 -4.9310 23 14 5.5643 0.3140 -3.2955 24 1 5.4103 0.6191 -1.8503 25 1 7.0024 0.1165 -3.6087 26 1 5.0332 1.4438 -4.0997 27 6 1.3571 -4.1470 0.2632 28 6 0.8489 -2.7012 0.4489 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5140 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6768 1.9563 0.8900 36 1 1.5278 -3.4695 2.8979 37 1 2.2640 -1.9384 3.4411 38 1 4.1190 -3.4094 3.2425 39 1 4.1526 -2.4730 1.7353 40 1 3.0037 -5.2221 2.1154 41 1 4.5314 -4.8087 1.3081 42 1 1.6305 -5.8226 -1.8726 43 1 0.4258 -5.6556 -4.0063 44 1 0.8328 -3.7692 -5.5288 45 1 2.4497 -2.0216 -4.9410 46 1 5.1029 -1.2318 -5.6256 47 1 0.9781 -4.5300 -0.6843 48 1 0.9661 -4.7638 1.0724 49 1 -0.1809 -2.7194 0.8056 50 1 0.8941 -2.1748 -0.5045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601034623.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:42 Heat of formation + Delta-G solvation = -41.469954 kcal Electronic energy + Delta-G solvation = -33183.502475 eV Core-core repulsion = 29175.594812 eV Total energy + Delta-G solvation = -4007.907663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.54521 -39.16978 -37.30098 -36.33121 -34.68092 -34.08874 -33.69238 -32.80255 -30.08090 -29.59108 -28.19245 -27.23209 -26.27402 -25.41527 -23.52830 -23.26295 -21.36750 -21.21377 -20.75090 -18.91254 -18.32169 -17.30875 -17.06265 -16.62995 -16.13583 -15.55893 -15.39887 -14.99222 -14.60160 -14.54400 -14.15235 -13.96442 -13.65774 -13.63741 -13.26127 -12.91615 -12.69791 -12.61618 -12.42982 -12.25926 -12.17515 -12.08384 -11.70820 -11.64696 -11.58068 -11.25588 -11.16656 -11.11566 -11.02878 -10.92273 -10.83350 -10.69888 -10.66059 -10.51081 -10.01158 -9.71698 -9.37499 -9.31529 -8.77509 -8.47138 -8.11754 -7.58210 -7.52942 -6.88165 -4.50269 2.43748 2.72014 2.94352 3.05854 3.13832 3.14295 3.19596 3.57615 3.85015 3.90504 4.52727 4.63274 4.94957 5.04570 5.08373 5.10951 5.20545 5.25752 5.37109 5.45897 5.48912 5.61379 5.63047 5.77138 5.77530 5.83632 5.86769 5.92808 5.97340 5.98829 6.02753 6.03300 6.16498 6.21396 6.26882 6.40843 6.42658 6.49520 6.53056 6.86943 6.90175 7.01235 7.08787 7.14985 7.36083 7.54119 7.59059 7.78161 7.88633 8.04632 8.16501 8.46911 8.48773 8.71022 8.77255 9.14459 10.06429 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008712 B = 0.006392 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.066930 B = 4379.724912 C = 5507.279890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.128 4.128 4 C 0.521 3.479 5 O -0.548 6.548 6 N -0.602 5.602 7 C 0.124 3.876 8 C -0.156 4.156 9 C 0.120 3.880 10 N -0.613 5.613 11 C 0.585 3.415 12 O -0.534 6.534 13 C -0.252 4.252 14 C -0.064 4.064 15 C -0.243 4.243 16 C -0.094 4.094 17 C -0.153 4.153 18 C 0.148 3.852 19 C -0.432 4.432 20 H 0.077 0.923 21 C 0.081 3.919 22 N -0.784 5.784 23 Si 0.902 3.098 24 H -0.256 1.256 25 H -0.272 1.272 26 H -0.270 1.270 27 C 0.094 3.906 28 C 0.085 3.915 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.283 0.717 47 H 0.105 0.895 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.141 -0.781 8.696 13.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.186 4.186 4 C 0.310 3.690 5 O -0.425 6.425 6 N -0.335 5.335 7 C 0.000 4.000 8 C -0.196 4.196 9 C -0.002 4.002 10 N -0.348 5.348 11 C 0.377 3.623 12 O -0.410 6.410 13 C -0.257 4.257 14 C -0.083 4.083 15 C -0.262 4.262 16 C -0.113 4.113 17 C -0.172 4.172 18 C 0.144 3.856 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.139 4.139 22 N -0.408 5.408 23 Si 0.725 3.275 24 H -0.179 1.179 25 H -0.197 1.197 26 H -0.195 1.195 27 C -0.032 4.032 28 C -0.038 4.038 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.136 0.864 46 H 0.094 0.906 47 H 0.123 0.877 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.979 -0.442 8.902 12.651 hybrid contribution 0.511 0.494 -0.007 0.711 sum -8.468 0.052 8.895 12.282 Atomic orbital electron populations 1.22039 0.93358 1.03101 1.02388 1.21345 0.97265 0.98047 0.97632 1.21556 1.01910 0.93723 1.01371 1.20767 0.79407 0.81428 0.87382 1.90634 1.38120 1.66358 1.47413 1.47672 1.51489 1.11255 1.23066 1.20958 0.94268 0.96879 0.87899 1.21514 0.98197 0.99219 1.00628 1.20519 0.98630 0.96364 0.84652 1.47591 1.05878 1.74271 1.07025 1.18599 0.86965 0.73400 0.83303 1.90688 1.14320 1.48847 1.87096 1.19403 1.07476 1.00749 0.98052 1.20501 0.95098 0.96492 0.96188 1.20259 1.07009 1.01621 0.97344 1.20780 0.98033 0.95061 0.97437 1.21299 0.97131 0.99897 0.98898 1.17336 0.89347 0.89152 0.89730 1.19539 1.17489 1.14851 0.94215 0.90510 1.25901 0.95829 0.97902 0.94270 1.69701 1.33114 1.35838 1.02196 0.86328 0.79627 0.80942 0.80557 1.17931 1.19696 1.19453 1.21603 0.82250 0.95086 1.04233 1.23187 0.92971 0.94609 0.93032 0.91432 0.91223 0.92755 0.87041 0.92097 0.92143 0.92584 0.90939 0.90252 0.90839 0.90852 0.91943 0.89640 0.88985 0.89096 0.89153 0.86392 0.90594 0.87715 0.91580 0.90764 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.73 37.16 0.32 -1.47 16 2 C -0.12 -1.88 2.44 -91.77 -0.22 -2.11 16 3 C -0.13 -1.95 8.48 37.16 0.32 -1.64 16 4 C 0.52 8.92 6.78 -10.98 -0.07 8.85 16 5 O -0.55 -10.99 15.48 5.56 0.09 -10.90 16 6 N -0.60 -8.79 2.50 -172.76 -0.43 -9.22 16 7 C 0.12 1.62 5.33 -5.24 -0.03 1.59 16 8 C -0.16 -2.27 5.64 -29.13 -0.16 -2.44 16 9 C 0.12 1.78 5.67 -5.91 -0.03 1.74 16 10 N -0.61 -10.37 2.47 -178.26 -0.44 -10.81 16 11 C 0.59 12.93 6.29 -12.52 -0.08 12.85 16 12 O -0.53 -14.02 15.74 5.27 0.08 -13.94 16 13 C -0.25 -5.67 4.99 -104.37 -0.52 -6.19 16 14 C -0.06 -1.27 7.56 -39.22 -0.30 -1.56 16 15 C -0.24 -4.74 10.03 -39.37 -0.39 -5.14 16 16 C -0.09 -1.97 10.01 -39.60 -0.40 -2.37 16 17 C -0.15 -3.61 8.64 -38.89 -0.34 -3.94 16 18 C 0.15 3.65 5.54 -106.54 -0.59 3.06 16 19 C -0.43 -11.16 7.95 -37.81 -0.30 -11.47 16 20 H 0.08 2.08 7.26 -52.49 -0.38 1.70 16 21 C 0.08 2.00 5.20 -17.30 -0.09 1.91 16 22 N -0.78 -19.77 11.08 55.56 0.62 -19.15 16 23 Si 0.90 19.26 29.58 -169.99 -5.03 14.23 16 24 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 C 0.09 1.25 5.04 -4.85 -0.02 1.23 16 28 C 0.09 1.09 4.93 -2.02 -0.01 1.08 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.75 4.59 -51.93 -0.24 0.51 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.11 1.96 7.41 -51.93 -0.38 1.58 16 33 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 34 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.07 0.75 7.58 -51.93 -0.39 0.35 16 37 H 0.08 1.09 7.40 -51.93 -0.38 0.70 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.41 7.89 -51.93 -0.41 1.00 16 40 H 0.06 0.71 8.06 -51.93 -0.42 0.30 16 41 H 0.09 1.43 7.19 -51.93 -0.37 1.06 16 42 H 0.09 1.58 7.41 -52.49 -0.39 1.19 16 43 H 0.09 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 45 H 0.12 2.88 6.44 -52.49 -0.34 2.54 16 46 H 0.28 6.50 8.29 -40.82 -0.34 6.16 16 47 H 0.11 1.47 4.31 -51.93 -0.22 1.24 16 48 H 0.07 0.69 7.73 -51.93 -0.40 0.28 16 49 H 0.07 0.72 7.47 -51.93 -0.39 0.33 16 50 H 0.10 1.42 5.23 -51.93 -0.27 1.15 16 LS Contribution 386.58 15.07 5.83 5.83 Total: -1.00 -31.11 386.58 -9.72 -40.83 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.51 Total: 9.13 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -2.92 Total: -6.00 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: -0.26 Total: -39.18 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: 0.17 Total: -24.84 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.11 -9.72 -40.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601034623.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.638 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds