Wall clock time and date at job start Wed Apr 1 2020 03:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46661 * 2 1 4 4 C 1.53001 * 109.47210 * 119.99938 * 2 1 3 5 5 N 1.46504 * 109.47248 * 240.00219 * 2 1 3 6 6 C 1.46762 * 124.34816 * 179.72147 * 5 2 1 7 7 C 1.54663 * 105.38010 * 162.85126 * 6 5 2 8 8 H 1.09003 * 110.85105 * 143.79119 * 7 6 5 9 9 C 1.52996 * 111.19603 * 267.59437 * 7 6 5 10 10 N 1.46495 * 109.47066 * 178.86103 * 9 7 6 11 11 C 1.34778 * 120.00166 * 179.97438 * 10 9 7 12 12 O 1.21612 * 119.99919 * 0.02562 * 11 10 9 13 13 C 1.47435 * 120.00222 * 180.02562 * 11 10 9 14 14 C 1.39222 * 120.27930 * 355.35613 * 13 11 10 15 15 C 1.38227 * 120.08556 * 179.97438 * 14 13 11 16 16 C 1.38820 * 120.67808 * 0.02562 * 15 14 13 17 17 C 1.37596 * 120.57296 * 359.97438 * 16 15 14 18 18 C 1.40706 * 119.87850 * 359.74447 * 17 16 15 19 19 C 1.40891 * 120.32648 * 180.25460 * 18 17 16 20 20 H 1.08000 * 120.00208 * 215.81523 * 19 18 17 21 21 C 1.40273 * 120.00085 * 35.81325 * 19 18 17 22 22 N 1.30628 * 120.00049 * 8.98378 * 21 19 18 23 23 Si 1.86803 * 119.99821 * 188.98390 * 21 19 18 24 24 H 1.48502 * 109.47354 * 60.00289 * 23 21 19 25 25 H 1.48498 * 109.47012 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47313 * 300.00010 * 23 21 19 27 27 C 1.54633 * 101.68359 * 25.77136 * 7 6 5 28 28 C 1.34421 * 124.34778 * 0.02562 * 5 2 1 29 29 O 1.21275 * 124.94166 * 0.43143 * 28 5 2 30 30 H 1.09002 * 109.47100 * 60.00104 * 1 2 3 31 31 H 1.08997 * 109.47278 * 299.99704 * 1 2 3 32 32 H 1.09006 * 109.47057 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47033 * 60.00145 * 3 2 1 34 34 H 1.09000 * 109.46707 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47279 * 299.99786 * 3 2 1 36 36 H 1.08998 * 109.46908 * 60.00523 * 4 2 1 37 37 H 1.08997 * 109.46873 * 180.02562 * 4 2 1 38 38 H 1.08994 * 109.46798 * 300.00318 * 4 2 1 39 39 H 1.08996 * 110.24383 * 281.98404 * 6 5 2 40 40 H 1.09000 * 110.24086 * 43.98660 * 6 5 2 41 41 H 1.09002 * 109.47106 * 298.86825 * 9 7 6 42 42 H 1.09006 * 109.46794 * 58.86552 * 9 7 6 43 43 H 0.96999 * 120.00111 * 0.02562 * 10 9 7 44 44 H 1.07993 * 119.95639 * 0.02562 * 14 13 11 45 45 H 1.08003 * 119.65591 * 180.02562 * 15 14 13 46 46 H 1.08002 * 119.71520 * 179.97438 * 16 15 14 47 47 H 1.08002 * 120.05807 * 180.02562 * 17 16 15 48 48 H 0.97003 * 119.99833 * 180.02562 * 22 21 19 49 49 H 1.08994 * 110.48355 * 216.30969 * 27 7 6 50 50 H 1.08993 * 110.48725 * 93.66321 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 2.0184 -0.6906 -1.1962 6 6 3.4368 -0.8739 -1.5255 7 6 3.4695 -1.9974 -2.5878 8 1 4.2486 -1.8102 -3.3268 9 6 3.6549 -3.3693 -1.9364 10 7 3.6532 -4.4057 -2.9718 11 6 3.8035 -5.7006 -2.6295 12 8 3.9401 -6.0087 -1.4610 13 6 3.8024 -6.7436 -3.6715 14 6 3.5505 -6.4090 -4.9993 15 6 3.5509 -7.3900 -5.9731 16 6 3.8005 -8.7152 -5.6434 17 6 4.0528 -9.0766 -4.3399 18 6 4.0640 -8.0964 -3.3304 19 6 4.3265 -8.4551 -1.9935 20 1 3.8165 -7.9475 -1.1881 21 6 5.2502 -9.4715 -1.7084 22 7 5.9945 -9.9640 -2.6623 23 14 5.4160 -10.1207 0.0353 24 1 4.1155 -10.6829 0.4800 25 1 6.4532 -11.1828 0.0715 26 1 5.8116 -9.0122 0.9408 27 6 2.0644 -1.8708 -3.2209 28 6 1.2249 -1.2326 -2.1361 29 8 0.0124 -1.2126 -2.1174 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6768 -1.7489 1.2492 37 1 3.1300 -0.7208 1.2494 38 1 1.6767 -0.2074 2.1391 39 1 3.8512 0.0477 -1.9342 40 1 3.9934 -1.1782 -0.6391 41 1 4.6041 -3.3920 -1.4010 42 1 2.8390 -3.5529 -1.2373 43 1 3.5447 -4.1600 -3.9039 44 1 3.3553 -5.3817 -5.2688 45 1 3.3551 -7.1227 -7.0010 46 1 3.7966 -9.4692 -6.4167 47 1 4.2463 -10.1100 -4.0928 48 1 6.6330 -10.6672 -2.4652 49 1 1.6718 -2.8545 -3.4780 50 1 2.0994 -1.2306 -4.1023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601668593.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:07 Heat of formation + Delta-G solvation = -53.064566 kcal Electronic energy + Delta-G solvation = -30418.596229 eV Core-core repulsion = 26410.185786 eV Total energy + Delta-G solvation = -4008.410443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.03326 -38.94871 -37.11402 -36.84599 -36.26031 -33.97539 -33.39965 -30.82122 -29.90388 -29.41583 -28.25040 -27.63767 -27.44997 -25.85637 -24.95727 -22.13408 -21.88747 -21.00549 -20.58877 -19.41543 -18.70403 -17.59028 -16.83324 -16.64030 -16.04276 -15.37216 -15.31339 -15.09266 -14.78546 -14.28970 -14.24199 -14.09911 -13.99060 -13.79146 -13.47749 -13.29225 -13.14928 -12.81570 -12.70104 -12.50286 -12.34695 -12.30242 -12.13081 -11.89928 -11.72486 -11.58486 -11.45146 -11.39066 -11.22925 -11.12064 -11.03780 -10.97992 -10.67735 -10.51310 -10.12685 -9.68529 -9.47768 -9.25680 -8.85358 -8.42913 -8.38466 -7.59790 -7.34303 -6.80079 -4.39850 2.34964 2.52647 2.76973 2.82002 3.09264 3.15593 3.24640 3.76436 3.97925 4.13681 4.16784 4.37174 4.52407 4.56981 4.64687 4.69164 4.75538 4.82233 5.16858 5.25522 5.28206 5.29024 5.36824 5.48209 5.50064 5.53814 5.58308 5.60293 5.68347 5.69924 5.79465 5.87049 5.97152 6.00770 6.05230 6.15856 6.19725 6.28297 6.51375 6.60362 6.93849 7.01629 7.04810 7.13640 7.22978 7.45342 7.60870 7.87261 7.98167 8.12002 8.17413 8.34716 8.67379 8.82695 8.90147 9.39565 10.16006 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.002766 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.721999 B =10120.191102 C =11465.684472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.173 3.827 3 C -0.156 4.156 4 C -0.160 4.160 5 N -0.611 5.611 6 C 0.110 3.890 7 C -0.112 4.112 8 H 0.104 0.896 9 C 0.135 3.865 10 N -0.749 5.749 11 C 0.565 3.435 12 O -0.538 6.538 13 C -0.261 4.261 14 C -0.057 4.057 15 C -0.244 4.244 16 C -0.096 4.096 17 C -0.146 4.146 18 C 0.147 3.853 19 C -0.423 4.423 20 H 0.110 0.890 21 C 0.069 3.931 22 N -0.794 5.794 23 Si 0.916 3.084 24 H -0.263 1.263 25 H -0.280 1.280 26 H -0.262 1.262 27 C -0.156 4.156 28 C 0.522 3.478 29 O -0.529 6.529 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.392 0.608 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.115 0.885 48 H 0.282 0.718 49 H 0.107 0.893 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.654 18.614 2.128 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.090 3.910 3 C -0.214 4.214 4 C -0.218 4.218 5 N -0.346 5.346 6 C -0.013 4.013 7 C -0.131 4.131 8 H 0.122 0.878 9 C 0.011 3.989 10 N -0.404 5.404 11 C 0.360 3.640 12 O -0.417 6.417 13 C -0.266 4.266 14 C -0.076 4.076 15 C -0.264 4.264 16 C -0.115 4.115 17 C -0.165 4.165 18 C 0.143 3.857 19 C -0.451 4.451 20 H 0.127 0.873 21 C -0.149 4.149 22 N -0.420 5.420 23 Si 0.741 3.259 24 H -0.187 1.187 25 H -0.205 1.205 26 H -0.187 1.187 27 C -0.196 4.196 28 C 0.310 3.690 29 O -0.406 6.406 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.227 0.773 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.133 0.867 48 H 0.093 0.907 49 H 0.126 0.874 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.027 18.262 3.052 18.761 hybrid contribution 0.411 -0.154 0.099 0.450 sum -2.616 18.108 3.151 18.565 Atomic orbital electron populations 1.22096 0.92166 1.03727 1.01818 1.20459 0.95319 0.91398 0.83870 1.22181 1.01449 0.95238 1.02514 1.22201 1.01606 1.01331 0.96620 1.48420 1.07144 1.56585 1.22461 1.22048 0.82347 0.97980 0.98933 1.22464 0.97678 0.94986 0.97987 0.87785 1.21061 1.02000 0.84799 0.91081 1.45967 1.78531 1.06474 1.09462 1.18406 0.75367 0.81207 0.89059 1.90657 1.49729 1.81225 1.20064 1.19445 1.22013 0.93377 0.91729 1.20636 0.97689 0.96597 0.92682 1.20290 1.15080 0.93757 0.97227 1.20801 0.99447 0.95205 0.96042 1.21339 1.03672 0.99453 0.92070 1.17479 0.85981 0.88727 0.93493 1.20266 1.18089 1.12521 0.94212 0.87257 1.26139 0.94638 0.94455 0.99650 1.69710 1.16371 1.21378 1.34515 0.86219 0.78810 0.78764 0.82125 1.18734 1.20506 1.18677 1.22503 0.95073 1.03859 0.98179 1.20847 0.87412 0.77594 0.83186 1.90721 1.12868 1.59495 1.77526 0.91347 0.92539 0.91163 0.91355 0.92212 0.92252 0.91809 0.92094 0.91350 0.90669 0.89871 0.91511 0.92114 0.77337 0.89270 0.89081 0.89078 0.86682 0.90693 0.87432 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 7.00 37.16 0.26 -1.24 16 2 C 0.17 1.60 1.20 -131.81 -0.16 1.44 16 3 C -0.16 -1.10 8.53 37.16 0.32 -0.78 16 4 C -0.16 -1.37 8.50 37.16 0.32 -1.05 16 5 N -0.61 -6.18 2.76 -157.46 -0.43 -6.62 16 6 C 0.11 0.87 6.16 -3.02 -0.02 0.85 16 7 C -0.11 -1.01 3.21 -88.89 -0.29 -1.30 16 8 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 9 C 0.14 1.83 5.04 -4.05 -0.02 1.81 16 10 N -0.75 -12.30 5.06 -61.38 -0.31 -12.61 16 11 C 0.57 12.70 7.72 -12.51 -0.10 12.60 16 12 O -0.54 -13.88 13.53 5.27 0.07 -13.81 16 13 C -0.26 -6.24 5.92 -104.37 -0.62 -6.86 16 14 C -0.06 -1.19 9.52 -39.22 -0.37 -1.56 16 15 C -0.24 -5.10 10.03 -39.37 -0.39 -5.49 16 16 C -0.10 -2.15 10.01 -39.60 -0.40 -2.54 16 17 C -0.15 -3.69 8.62 -38.88 -0.34 -4.02 16 18 C 0.15 3.92 5.48 -106.54 -0.58 3.34 16 19 C -0.42 -11.57 7.78 -37.81 -0.29 -11.86 16 20 H 0.11 3.11 5.73 -52.49 -0.30 2.81 16 21 C 0.07 1.78 5.25 -17.30 -0.09 1.69 16 22 N -0.79 -20.52 11.25 55.56 0.63 -19.89 16 23 Si 0.92 19.63 29.57 -169.99 -5.03 14.61 16 24 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 27 C -0.16 -1.58 6.24 -26.74 -0.17 -1.74 16 28 C 0.52 6.57 7.84 -10.86 -0.09 6.48 16 29 O -0.53 -8.48 13.99 5.56 0.08 -8.40 16 30 H 0.07 0.82 7.06 -51.93 -0.37 0.45 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.92 7.08 -51.93 -0.37 0.55 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.37 7.89 -51.93 -0.41 -0.04 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.47 7.22 -51.93 -0.37 0.10 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.63 6.91 -51.93 -0.36 0.27 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.39 5.45 6.25 -40.82 -0.26 5.20 16 44 H 0.09 1.49 6.42 -52.49 -0.34 1.15 16 45 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 46 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 47 H 0.12 2.97 6.72 -52.49 -0.35 2.62 16 48 H 0.28 6.65 8.29 -40.82 -0.34 6.31 16 49 H 0.11 1.25 7.40 -51.93 -0.38 0.87 16 50 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 396.03 15.07 5.97 5.97 Total: -1.00 -31.97 396.03 -9.77 -41.74 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -7.71 Total: 9.26 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -3.03 Total: -10.25 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: -0.12 Total: -39.12 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.15 Total: -22.21 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.97 -9.77 -41.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601668593.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.323 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds