Wall clock time and date at job start Wed Apr 1 2020 03:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46661 * 2 1 4 4 C 1.53001 * 109.47210 * 119.99938 * 2 1 3 5 5 N 1.46504 * 109.47248 * 240.00219 * 2 1 3 6 6 C 1.46762 * 124.34816 * 179.72147 * 5 2 1 7 7 C 1.54663 * 105.38010 * 162.85126 * 6 5 2 8 8 H 1.09003 * 110.85105 * 143.79119 * 7 6 5 9 9 C 1.52996 * 111.19603 * 267.59437 * 7 6 5 10 10 N 1.46495 * 109.47066 * 178.86103 * 9 7 6 11 11 C 1.34778 * 120.00166 * 179.97438 * 10 9 7 12 12 O 1.21612 * 119.99919 * 0.02562 * 11 10 9 13 13 C 1.47435 * 120.00222 * 180.02562 * 11 10 9 14 14 C 1.39222 * 120.27930 * 355.35613 * 13 11 10 15 15 C 1.38227 * 120.08556 * 179.97438 * 14 13 11 16 16 C 1.38820 * 120.67808 * 0.02562 * 15 14 13 17 17 C 1.37596 * 120.57296 * 359.97438 * 16 15 14 18 18 C 1.40706 * 119.87850 * 359.74447 * 17 16 15 19 19 C 1.40891 * 120.32648 * 180.25460 * 18 17 16 20 20 H 1.08000 * 120.00208 * 215.81523 * 19 18 17 21 21 C 1.40273 * 120.00085 * 35.81325 * 19 18 17 22 22 N 1.30628 * 120.00049 * 8.98378 * 21 19 18 23 23 Si 1.86803 * 119.99821 * 188.98390 * 21 19 18 24 24 H 1.48502 * 109.47354 * 60.00289 * 23 21 19 25 25 H 1.48498 * 109.47012 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47313 * 300.00010 * 23 21 19 27 27 C 1.54633 * 101.68359 * 25.77136 * 7 6 5 28 28 C 1.34421 * 124.34778 * 0.02562 * 5 2 1 29 29 O 1.21275 * 124.94166 * 0.43143 * 28 5 2 30 30 H 1.09002 * 109.47100 * 60.00104 * 1 2 3 31 31 H 1.08997 * 109.47278 * 299.99704 * 1 2 3 32 32 H 1.09006 * 109.47057 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47033 * 60.00145 * 3 2 1 34 34 H 1.09000 * 109.46707 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47279 * 299.99786 * 3 2 1 36 36 H 1.08998 * 109.46908 * 60.00523 * 4 2 1 37 37 H 1.08997 * 109.46873 * 180.02562 * 4 2 1 38 38 H 1.08994 * 109.46798 * 300.00318 * 4 2 1 39 39 H 1.08996 * 110.24383 * 281.98404 * 6 5 2 40 40 H 1.09000 * 110.24086 * 43.98660 * 6 5 2 41 41 H 1.09002 * 109.47106 * 298.86825 * 9 7 6 42 42 H 1.09006 * 109.46794 * 58.86552 * 9 7 6 43 43 H 0.96999 * 120.00111 * 0.02562 * 10 9 7 44 44 H 1.07993 * 119.95639 * 0.02562 * 14 13 11 45 45 H 1.08003 * 119.65591 * 180.02562 * 15 14 13 46 46 H 1.08002 * 119.71520 * 179.97438 * 16 15 14 47 47 H 1.08002 * 120.05807 * 180.02562 * 17 16 15 48 48 H 0.97003 * 119.99833 * 180.02562 * 22 21 19 49 49 H 1.08994 * 110.48355 * 216.30969 * 27 7 6 50 50 H 1.08993 * 110.48725 * 93.66321 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 2.0184 -0.6906 -1.1962 6 6 3.4368 -0.8739 -1.5255 7 6 3.4695 -1.9974 -2.5878 8 1 4.2486 -1.8102 -3.3268 9 6 3.6549 -3.3693 -1.9364 10 7 3.6532 -4.4057 -2.9718 11 6 3.8035 -5.7006 -2.6295 12 8 3.9401 -6.0087 -1.4610 13 6 3.8024 -6.7436 -3.6715 14 6 3.5505 -6.4090 -4.9993 15 6 3.5509 -7.3900 -5.9731 16 6 3.8005 -8.7152 -5.6434 17 6 4.0528 -9.0766 -4.3399 18 6 4.0640 -8.0964 -3.3304 19 6 4.3265 -8.4551 -1.9935 20 1 3.8165 -7.9475 -1.1881 21 6 5.2502 -9.4715 -1.7084 22 7 5.9945 -9.9640 -2.6623 23 14 5.4160 -10.1207 0.0353 24 1 4.1155 -10.6829 0.4800 25 1 6.4532 -11.1828 0.0715 26 1 5.8116 -9.0122 0.9408 27 6 2.0644 -1.8708 -3.2209 28 6 1.2249 -1.2326 -2.1361 29 8 0.0124 -1.2126 -2.1174 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6768 -1.7489 1.2492 37 1 3.1300 -0.7208 1.2494 38 1 1.6767 -0.2074 2.1391 39 1 3.8512 0.0477 -1.9342 40 1 3.9934 -1.1782 -0.6391 41 1 4.6041 -3.3920 -1.4010 42 1 2.8390 -3.5529 -1.2373 43 1 3.5447 -4.1600 -3.9039 44 1 3.3553 -5.3817 -5.2688 45 1 3.3551 -7.1227 -7.0010 46 1 3.7966 -9.4692 -6.4167 47 1 4.2463 -10.1100 -4.0928 48 1 6.6330 -10.6672 -2.4652 49 1 1.6718 -2.8545 -3.4780 50 1 2.0994 -1.2306 -4.1023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601668593.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:06 Heat of formation + Delta-G solvation = -72.411443 kcal Electronic energy + Delta-G solvation = -30419.435172 eV Core-core repulsion = 26410.185786 eV Total energy + Delta-G solvation = -4009.249386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.90171 -40.62476 -38.67259 -37.83171 -37.38305 -35.68175 -34.91797 -32.13506 -31.64558 -30.89262 -29.09867 -28.35427 -28.23240 -27.41769 -26.33730 -23.80148 -22.76029 -22.64517 -21.62335 -21.02014 -19.59189 -19.38111 -18.10895 -17.63202 -17.21344 -17.10253 -16.55863 -16.29695 -15.97343 -15.91682 -15.52846 -15.09557 -14.95279 -14.92853 -14.71981 -14.52266 -14.46774 -14.32796 -13.87252 -13.73365 -13.53719 -13.32182 -13.05544 -12.97873 -12.87908 -12.85618 -12.65592 -12.47919 -12.44651 -12.33047 -12.27902 -12.19824 -11.95586 -11.93409 -11.85644 -11.45631 -11.12980 -10.42969 -10.22578 -9.95003 -9.63399 -9.37206 -9.19500 -8.66637 -6.35925 0.53784 1.03556 1.32932 1.44282 1.50635 1.59771 2.01780 2.21056 2.37467 2.46435 2.81322 3.36303 3.49786 3.66915 3.73607 3.81779 3.91930 3.99816 4.09016 4.33797 4.39825 4.41811 4.54411 4.59591 4.62997 4.66837 4.69104 4.71772 4.75320 4.80086 4.81391 4.88967 4.93076 4.93832 5.00104 5.10809 5.15045 5.17337 5.25788 5.28394 5.35709 5.36451 5.63935 5.68079 5.73926 5.83827 6.07395 6.12870 6.19581 6.36846 6.67110 6.82283 6.94257 7.03626 7.21731 7.69829 8.31442 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013758 B = 0.002766 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.721999 B =10120.191102 C =11465.684472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.165 3.835 3 C -0.147 4.147 4 C -0.156 4.156 5 N -0.609 5.609 6 C 0.109 3.891 7 C -0.095 4.095 8 H 0.141 0.859 9 C 0.135 3.865 10 N -0.725 5.725 11 C 0.559 3.441 12 O -0.581 6.581 13 C -0.278 4.278 14 C -0.053 4.053 15 C -0.235 4.235 16 C -0.093 4.093 17 C -0.177 4.177 18 C 0.115 3.885 19 C -0.465 4.465 20 H 0.085 0.915 21 C 0.033 3.967 22 N -0.824 5.824 23 Si 0.976 3.024 24 H -0.261 1.261 25 H -0.259 1.259 26 H -0.272 1.272 27 C -0.151 4.151 28 C 0.505 3.495 29 O -0.577 6.577 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.408 0.592 44 H 0.137 0.863 45 H 0.134 0.866 46 H 0.119 0.881 47 H 0.096 0.904 48 H 0.289 0.711 49 H 0.090 0.910 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 21.508 0.540 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.082 3.918 3 C -0.205 4.205 4 C -0.214 4.214 5 N -0.343 5.343 6 C -0.013 4.013 7 C -0.114 4.114 8 H 0.158 0.842 9 C 0.011 3.989 10 N -0.380 5.380 11 C 0.352 3.648 12 O -0.463 6.463 13 C -0.283 4.283 14 C -0.071 4.071 15 C -0.254 4.254 16 C -0.112 4.112 17 C -0.197 4.197 18 C 0.111 3.889 19 C -0.494 4.494 20 H 0.103 0.897 21 C -0.182 4.182 22 N -0.451 5.451 23 Si 0.798 3.202 24 H -0.185 1.185 25 H -0.183 1.183 26 H -0.197 1.197 27 C -0.191 4.191 28 C 0.295 3.705 29 O -0.457 6.457 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.246 0.754 44 H 0.155 0.845 45 H 0.152 0.848 46 H 0.137 0.863 47 H 0.114 0.886 48 H 0.099 0.901 49 H 0.108 0.892 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.846 21.200 1.429 21.328 hybrid contribution -0.052 -0.904 0.459 1.015 sum -1.898 20.296 1.888 20.472 Atomic orbital electron populations 1.21994 0.93731 1.01520 1.01918 1.20628 0.94238 0.93122 0.83800 1.22109 1.02363 0.93034 1.03006 1.22177 1.02308 0.99794 0.97101 1.48587 1.08021 1.55632 1.22029 1.22287 0.80991 0.98964 0.99080 1.22416 0.98088 0.92208 0.98711 0.84159 1.21201 1.00844 0.86458 0.90424 1.45677 1.76230 1.05041 1.11033 1.18435 0.75236 0.82979 0.88165 1.90637 1.51709 1.82325 1.21630 1.19863 1.21499 0.93097 0.93841 1.21093 0.95833 0.99169 0.91039 1.20826 1.12468 0.92800 0.99295 1.21186 0.97618 0.97040 0.95351 1.21270 1.06362 0.98537 0.93494 1.17873 0.86771 0.90451 0.93793 1.20203 1.20300 1.14639 0.94290 0.89733 1.26775 0.93904 0.94308 1.03223 1.69735 1.17127 1.22240 1.35969 0.85347 0.79213 0.78199 0.77465 1.18509 1.18293 1.19693 1.22514 0.94759 1.03283 0.98521 1.21386 0.87207 0.77677 0.84276 1.90697 1.14897 1.61388 1.78753 0.93006 0.90554 0.94516 0.90000 0.90595 0.92700 0.94562 0.90838 0.89674 0.87038 0.89220 0.91751 0.94783 0.75435 0.84547 0.84830 0.86332 0.88605 0.90079 0.89164 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 7.00 71.98 0.50 -2.41 16 2 C 0.17 2.84 1.20 3.61 0.00 2.85 16 3 C -0.15 -1.65 8.53 71.98 0.61 -1.03 16 4 C -0.16 -2.51 8.50 71.98 0.61 -1.90 16 5 N -0.61 -11.38 2.76 -770.67 -2.13 -13.51 16 6 C 0.11 1.34 6.16 86.90 0.53 1.88 16 7 C -0.10 -1.40 3.21 -9.67 -0.03 -1.43 16 8 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 9 C 0.13 3.48 5.04 86.38 0.44 3.92 16 10 N -0.73 -22.81 5.06 -466.36 -2.36 -25.17 16 11 C 0.56 25.45 7.72 86.67 0.67 26.12 16 12 O -0.58 -31.47 13.53 -4.07 -0.06 -31.52 16 13 C -0.28 -13.37 5.92 -19.70 -0.12 -13.49 16 14 C -0.05 -2.04 9.52 22.50 0.21 -1.83 16 15 C -0.23 -8.97 10.03 22.41 0.22 -8.74 16 16 C -0.09 -4.03 10.01 22.26 0.22 -3.81 16 17 C -0.18 -9.19 8.62 22.72 0.20 -8.99 16 18 C 0.11 6.35 5.48 -21.11 -0.12 6.24 16 19 C -0.47 -27.07 7.78 23.41 0.18 -26.89 16 20 H 0.08 5.20 5.73 -2.91 -0.02 5.19 16 21 C 0.03 1.75 5.25 85.37 0.45 2.20 16 22 N -0.82 -44.37 11.25 21.88 0.25 -44.13 16 23 Si 0.98 42.16 29.57 68.60 2.03 44.19 16 24 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 27 C -0.15 -2.68 6.24 30.59 0.19 -2.49 16 28 C 0.51 12.45 7.84 87.90 0.69 13.14 16 29 O -0.58 -19.15 13.99 -3.01 -0.04 -19.19 16 30 H 0.05 1.28 7.06 -2.39 -0.02 1.26 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.04 1.02 7.08 -2.38 -0.02 1.01 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.63 7.89 -2.39 -0.02 0.61 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.99 7.22 -2.39 -0.02 0.97 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 1.05 6.91 -2.39 -0.02 1.03 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.41 10.01 6.25 -92.71 -0.58 9.43 16 44 H 0.14 3.88 6.42 -2.91 -0.02 3.87 16 45 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 46 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 47 H 0.10 5.21 6.72 -2.91 -0.02 5.19 16 48 H 0.29 14.06 8.29 -92.71 -0.77 13.29 16 49 H 0.09 1.96 7.40 -2.39 -0.02 1.94 16 50 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -77.77 396.03 3.54 -74.23 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.37 Total: 31.78 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 5.48 Total: -16.67 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -4.24 Total: -82.81 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.10 Total: -50.71 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -77.77 3.54 -74.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601668593.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.816 kcal (2) G-P(sol) polarization free energy of solvation -77.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds