Wall clock time and date at job start Wed Apr 1 2020 05:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47488 * 2 1 4 4 C 1.50693 * 109.47400 * 180.02562 * 3 2 1 5 5 O 1.21289 * 120.00064 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00148 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99937 * 179.97438 * 6 4 3 8 8 C 1.53045 * 109.45738 * 204.99998 * 7 6 4 9 9 C 1.53190 * 109.31216 * 178.62786 * 8 7 6 10 10 N 1.46928 * 108.89204 * 54.56612 * 9 8 7 11 11 C 1.34774 * 120.63463 * 126.46695 * 10 9 8 12 12 O 1.21551 * 119.99400 * 354.25555 * 11 10 9 13 13 C 1.47884 * 120.00241 * 174.26040 * 11 10 9 14 14 C 1.39919 * 120.02524 * 325.08281 * 13 11 10 15 15 C 1.38322 * 120.35725 * 179.78768 * 14 13 11 16 16 C 1.37756 * 120.41580 * 0.47502 * 15 14 13 17 17 C 1.40754 * 120.03366 * 359.78367 * 16 15 14 18 18 C 1.41436 * 120.17076 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00659 * 25.31177 * 18 17 16 20 20 C 1.39940 * 119.99502 * 205.31310 * 18 17 16 21 21 N 1.30825 * 120.00363 * 16.87826 * 20 18 17 22 22 Si 1.86804 * 119.99859 * 196.88423 * 20 18 17 23 23 H 1.48495 * 109.47062 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47374 * 119.99790 * 22 20 18 25 25 H 1.48504 * 109.46966 * 239.99808 * 22 20 18 26 26 C 1.38992 * 120.02505 * 145.36592 * 13 11 10 27 27 C 1.46962 * 118.71480 * 306.64128 * 10 9 8 28 28 C 1.53040 * 109.44900 * 84.94240 * 7 6 4 29 29 H 1.08992 * 109.47143 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46893 * 299.99786 * 1 2 3 31 31 H 1.08997 * 109.46722 * 59.99635 * 1 2 3 32 32 H 1.08996 * 109.47253 * 239.99790 * 2 1 3 33 33 H 1.09003 * 109.47046 * 120.00071 * 2 1 3 34 34 H 1.09003 * 109.46649 * 59.99740 * 3 2 1 35 35 H 1.08996 * 109.46885 * 300.00453 * 3 2 1 36 36 H 0.96998 * 120.00028 * 0.02562 * 6 4 3 37 37 H 1.08999 * 109.46228 * 324.97615 * 7 6 4 38 38 H 1.09001 * 109.49328 * 58.68179 * 8 7 6 39 39 H 1.08997 * 109.49993 * 298.58137 * 8 7 6 40 40 H 1.09001 * 109.58988 * 174.42257 * 9 8 7 41 41 H 1.09001 * 109.58929 * 294.71327 * 9 8 7 42 42 H 1.08002 * 119.81837 * 0.02562 * 14 13 11 43 43 H 1.08004 * 119.79346 * 180.24041 * 15 14 13 44 44 H 1.08003 * 119.98241 * 179.76849 * 16 15 14 45 45 H 0.97002 * 120.00135 * 180.02562 * 21 20 18 46 46 H 1.08004 * 120.20265 * 359.97438 * 26 13 11 47 47 H 1.08999 * 109.46607 * 293.57402 * 27 10 9 48 48 H 1.08999 * 109.71256 * 173.28703 * 27 10 9 49 49 H 1.08998 * 109.49606 * 301.33316 * 28 7 6 50 50 H 1.09001 * 109.49755 * 61.42009 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1535 0.3921 -0.0006 6 7 4.2209 2.6096 -0.0013 7 6 5.6860 2.6096 -0.0013 8 6 6.1959 3.9177 0.6078 9 6 7.7274 3.8996 0.6376 10 7 8.2264 3.6305 -0.7179 11 6 9.1220 4.4550 -1.2962 12 8 9.4459 5.4863 -0.7405 13 6 9.7106 4.1049 -2.6070 14 6 9.9707 2.7669 -2.9227 15 6 10.5171 2.4313 -4.1484 16 6 10.8205 3.4107 -5.0684 17 6 10.5709 4.7626 -4.7663 18 6 10.8808 5.7705 -5.7090 19 1 10.9134 5.5334 -6.7621 20 6 11.1451 7.0750 -5.2769 21 7 11.4321 7.3027 -4.0210 22 14 11.0879 8.4914 -6.4935 23 1 10.7433 7.9725 -7.8415 24 1 10.0601 9.4728 -6.0628 25 1 12.4156 9.1549 -6.5435 26 6 10.0113 5.1053 -3.5238 27 6 7.7270 2.4472 -1.4322 28 6 6.1955 2.4816 -1.4387 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.7360 3.4497 -0.0009 37 1 6.0491 1.7683 0.5889 38 1 5.8135 4.0193 1.6235 39 1 5.8536 4.7580 0.0039 40 1 8.0977 4.8666 0.9780 41 1 8.0705 3.1177 1.3151 42 1 9.7401 1.9916 -2.2071 43 1 10.7105 1.3952 -4.3841 44 1 11.2504 3.1411 -6.0218 45 1 11.6150 8.2070 -3.7215 46 1 9.8161 6.1398 -3.2827 47 1 8.0701 1.5453 -0.9253 48 1 8.0970 2.4534 -2.4575 49 1 5.8127 1.5612 -1.8798 50 1 5.8532 3.3354 -2.0234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603744183.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:36 Heat of formation + Delta-G solvation = -65.020766 kcal Electronic energy + Delta-G solvation = -29863.954186 eV Core-core repulsion = 25855.025284 eV Total energy + Delta-G solvation = -4008.928903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.40097 -39.54806 -37.54190 -36.79413 -34.78290 -34.50812 -33.75516 -31.76045 -31.03208 -29.80242 -29.46596 -28.20222 -25.45395 -25.02371 -23.36557 -22.57980 -21.75451 -20.99467 -20.65062 -20.29009 -18.84198 -17.66000 -17.14938 -16.49854 -16.13850 -15.78711 -15.68574 -15.08072 -14.90851 -14.82444 -14.53200 -14.28625 -13.93136 -13.86259 -13.46403 -13.39619 -13.13300 -12.85915 -12.63371 -12.46380 -12.31212 -12.17795 -12.09062 -11.87897 -11.69601 -11.51490 -11.30166 -11.22169 -11.13788 -11.07461 -10.88238 -10.72653 -10.67793 -10.40759 -10.08015 -9.97887 -9.70088 -9.26906 -9.22390 -8.92201 -8.34072 -7.61401 -7.50308 -6.80168 -4.43132 2.27018 2.45916 2.77440 2.94943 3.06009 3.10236 3.12277 3.38033 3.72267 3.90032 4.41420 4.53974 4.55634 4.63403 4.65293 4.77385 4.97435 5.08631 5.12490 5.14852 5.23944 5.26804 5.35144 5.38964 5.50957 5.55651 5.60628 5.68778 5.73440 5.81499 5.82506 5.94439 5.98586 6.01809 6.05852 6.14704 6.21671 6.31915 6.34349 6.68280 6.87709 6.97152 7.03461 7.19339 7.29711 7.36953 7.64732 7.76494 7.86156 7.97890 8.04319 8.14965 8.48345 8.78476 8.80963 8.86358 10.13879 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.002244 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.450785 B =12473.815903 C =12588.362329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.510 3.490 5 O -0.540 6.540 6 N -0.728 5.728 7 C 0.145 3.855 8 C -0.139 4.139 9 C 0.116 3.884 10 N -0.617 5.617 11 C 0.568 3.432 12 O -0.542 6.542 13 C -0.122 4.122 14 C -0.225 4.225 15 C -0.097 4.097 16 C -0.212 4.212 17 C 0.101 3.899 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.072 3.928 21 N -0.782 5.782 22 Si 0.909 3.091 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.274 1.274 26 C -0.098 4.098 27 C 0.097 3.903 28 C -0.143 4.143 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.399 0.601 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.284 0.716 46 H 0.128 0.872 47 H 0.063 0.937 48 H 0.121 0.879 49 H 0.077 0.923 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.790 -7.719 8.314 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.182 4.182 4 C 0.297 3.703 5 O -0.416 6.416 6 N -0.379 5.379 7 C 0.040 3.960 8 C -0.178 4.178 9 C -0.007 4.007 10 N -0.352 5.352 11 C 0.360 3.640 12 O -0.420 6.420 13 C -0.125 4.125 14 C -0.244 4.244 15 C -0.115 4.115 16 C -0.232 4.232 17 C 0.098 3.902 18 C -0.489 4.489 19 H 0.099 0.901 20 C -0.147 4.147 21 N -0.406 5.406 22 Si 0.733 3.267 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.119 4.119 27 C -0.026 4.026 28 C -0.183 4.183 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.233 0.767 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.095 0.905 46 H 0.146 0.854 47 H 0.081 0.919 48 H 0.139 0.861 49 H 0.096 0.904 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.086 -7.722 8.789 20.708 hybrid contribution -0.223 1.087 -0.414 1.184 sum -17.309 -6.635 8.375 20.341 Atomic orbital electron populations 1.21796 0.95522 1.01987 1.01745 1.21278 0.95204 0.94676 1.03619 1.21734 0.91849 1.00261 1.04317 1.20783 0.90308 0.83663 0.75534 1.90714 1.70519 1.31262 1.49140 1.46188 1.07389 1.08665 1.75680 1.21014 0.78977 0.98800 0.97166 1.22193 0.96884 0.97209 1.01528 1.21392 0.91940 1.03098 0.84301 1.48023 1.44154 1.27144 1.15875 1.18985 0.77502 0.81869 0.85605 1.90703 1.61436 1.24775 1.65042 1.19410 1.04944 0.94826 0.93367 1.20548 1.11842 0.93787 0.98261 1.20468 0.99511 0.97320 0.94245 1.21109 1.08770 0.93407 0.99872 1.17585 0.88652 0.91842 0.92072 1.19615 1.41713 0.92668 0.94905 0.90063 1.25978 0.92448 1.00473 0.95809 1.69815 1.31114 1.23403 1.16291 0.86250 0.78708 0.80433 0.81317 1.18344 1.19636 1.19897 1.21515 0.98482 0.98048 0.93809 1.22268 0.92366 0.87216 1.00715 1.22341 0.96513 1.03044 0.96392 0.92395 0.92750 0.92658 0.91165 0.91281 0.89043 0.88924 0.76701 0.89341 0.90462 0.90840 0.88600 0.91799 0.88190 0.88815 0.88627 0.90494 0.85397 0.91853 0.86108 0.90430 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.48 16 2 C -0.11 -0.82 5.22 -26.73 -0.14 -0.96 16 3 C -0.14 -0.94 5.70 -27.88 -0.16 -1.10 16 4 C 0.51 5.17 7.79 -10.99 -0.09 5.09 16 5 O -0.54 -7.69 15.65 5.55 0.09 -7.60 16 6 N -0.73 -6.44 5.08 -53.76 -0.27 -6.71 16 7 C 0.14 1.57 2.42 -67.89 -0.16 1.40 16 8 C -0.14 -1.45 5.55 -26.61 -0.15 -1.60 16 9 C 0.12 1.57 6.44 -3.71 -0.02 1.54 16 10 N -0.62 -10.29 2.98 -173.84 -0.52 -10.81 16 11 C 0.57 12.37 7.39 -12.31 -0.09 12.28 16 12 O -0.54 -13.52 16.22 5.32 0.09 -13.43 16 13 C -0.12 -2.85 5.30 -105.04 -0.56 -3.41 16 14 C -0.22 -4.69 7.36 -38.92 -0.29 -4.98 16 15 C -0.10 -2.05 10.01 -39.73 -0.40 -2.45 16 16 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 17 C 0.10 2.64 5.56 -106.87 -0.59 2.04 16 18 C -0.46 -11.96 9.05 -37.73 -0.34 -12.30 16 19 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 20 C 0.07 1.81 5.15 -17.34 -0.09 1.72 16 21 N -0.78 -20.70 10.96 55.55 0.61 -20.09 16 22 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 C -0.10 -2.58 8.24 -38.45 -0.32 -2.90 16 27 C 0.10 1.41 4.75 -3.69 -0.02 1.39 16 28 C -0.14 -1.79 5.65 -26.61 -0.15 -1.94 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.40 2.48 8.60 -40.82 -0.35 2.13 16 37 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.44 7.00 -51.93 -0.36 1.08 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.10 1.82 5.98 -52.49 -0.31 1.50 16 43 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 44 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 45 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 46 H 0.13 3.62 6.11 -52.48 -0.32 3.30 16 47 H 0.06 0.84 8.04 -51.93 -0.42 0.42 16 48 H 0.12 1.97 4.45 -51.93 -0.23 1.74 16 49 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 400.77 15.07 6.04 6.04 Total: -1.00 -31.65 400.77 -10.43 -42.07 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -7.85 Total: 8.96 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -3.57 Total: -11.98 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.18 Total: -37.61 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.17 Total: -21.03 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.65 -10.43 -42.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603744183.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.947 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds