Wall clock time and date at job start Wed Apr 1 2020 05:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47488 * 2 1 4 4 C 1.50693 * 109.47400 * 180.02562 * 3 2 1 5 5 O 1.21289 * 120.00064 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00148 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99937 * 179.97438 * 6 4 3 8 8 C 1.53045 * 109.45738 * 204.99998 * 7 6 4 9 9 C 1.53190 * 109.31216 * 178.62786 * 8 7 6 10 10 N 1.46928 * 108.89204 * 54.56612 * 9 8 7 11 11 C 1.34774 * 120.63463 * 126.46695 * 10 9 8 12 12 O 1.21551 * 119.99400 * 354.25555 * 11 10 9 13 13 C 1.47884 * 120.00241 * 174.26040 * 11 10 9 14 14 C 1.39919 * 120.02524 * 325.08281 * 13 11 10 15 15 C 1.38322 * 120.35725 * 179.78768 * 14 13 11 16 16 C 1.37756 * 120.41580 * 0.47502 * 15 14 13 17 17 C 1.40754 * 120.03366 * 359.78367 * 16 15 14 18 18 C 1.41436 * 120.17076 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00659 * 25.31177 * 18 17 16 20 20 C 1.39940 * 119.99502 * 205.31310 * 18 17 16 21 21 N 1.30825 * 120.00363 * 16.87826 * 20 18 17 22 22 Si 1.86804 * 119.99859 * 196.88423 * 20 18 17 23 23 H 1.48495 * 109.47062 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47374 * 119.99790 * 22 20 18 25 25 H 1.48504 * 109.46966 * 239.99808 * 22 20 18 26 26 C 1.38992 * 120.02505 * 145.36592 * 13 11 10 27 27 C 1.46962 * 118.71480 * 306.64128 * 10 9 8 28 28 C 1.53040 * 109.44900 * 84.94240 * 7 6 4 29 29 H 1.08992 * 109.47143 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46893 * 299.99786 * 1 2 3 31 31 H 1.08997 * 109.46722 * 59.99635 * 1 2 3 32 32 H 1.08996 * 109.47253 * 239.99790 * 2 1 3 33 33 H 1.09003 * 109.47046 * 120.00071 * 2 1 3 34 34 H 1.09003 * 109.46649 * 59.99740 * 3 2 1 35 35 H 1.08996 * 109.46885 * 300.00453 * 3 2 1 36 36 H 0.96998 * 120.00028 * 0.02562 * 6 4 3 37 37 H 1.08999 * 109.46228 * 324.97615 * 7 6 4 38 38 H 1.09001 * 109.49328 * 58.68179 * 8 7 6 39 39 H 1.08997 * 109.49993 * 298.58137 * 8 7 6 40 40 H 1.09001 * 109.58988 * 174.42257 * 9 8 7 41 41 H 1.09001 * 109.58929 * 294.71327 * 9 8 7 42 42 H 1.08002 * 119.81837 * 0.02562 * 14 13 11 43 43 H 1.08004 * 119.79346 * 180.24041 * 15 14 13 44 44 H 1.08003 * 119.98241 * 179.76849 * 16 15 14 45 45 H 0.97002 * 120.00135 * 180.02562 * 21 20 18 46 46 H 1.08004 * 120.20265 * 359.97438 * 26 13 11 47 47 H 1.08999 * 109.46607 * 293.57402 * 27 10 9 48 48 H 1.08999 * 109.71256 * 173.28703 * 27 10 9 49 49 H 1.08998 * 109.49606 * 301.33316 * 28 7 6 50 50 H 1.09001 * 109.49755 * 61.42009 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1535 0.3921 -0.0006 6 7 4.2209 2.6096 -0.0013 7 6 5.6860 2.6096 -0.0013 8 6 6.1959 3.9177 0.6078 9 6 7.7274 3.8996 0.6376 10 7 8.2264 3.6305 -0.7179 11 6 9.1220 4.4550 -1.2962 12 8 9.4459 5.4863 -0.7405 13 6 9.7106 4.1049 -2.6070 14 6 9.9707 2.7669 -2.9227 15 6 10.5171 2.4313 -4.1484 16 6 10.8205 3.4107 -5.0684 17 6 10.5709 4.7626 -4.7663 18 6 10.8808 5.7705 -5.7090 19 1 10.9134 5.5334 -6.7621 20 6 11.1451 7.0750 -5.2769 21 7 11.4321 7.3027 -4.0210 22 14 11.0879 8.4914 -6.4935 23 1 10.7433 7.9725 -7.8415 24 1 10.0601 9.4728 -6.0628 25 1 12.4156 9.1549 -6.5435 26 6 10.0113 5.1053 -3.5238 27 6 7.7270 2.4472 -1.4322 28 6 6.1955 2.4816 -1.4387 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.7360 3.4497 -0.0009 37 1 6.0491 1.7683 0.5889 38 1 5.8135 4.0193 1.6235 39 1 5.8536 4.7580 0.0039 40 1 8.0977 4.8666 0.9780 41 1 8.0705 3.1177 1.3151 42 1 9.7401 1.9916 -2.2071 43 1 10.7105 1.3952 -4.3841 44 1 11.2504 3.1411 -6.0218 45 1 11.6150 8.2070 -3.7215 46 1 9.8161 6.1398 -3.2827 47 1 8.0701 1.5453 -0.9253 48 1 8.0970 2.4534 -2.4575 49 1 5.8127 1.5612 -1.8798 50 1 5.8532 3.3354 -2.0234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603744183.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:34 Heat of formation + Delta-G solvation = -83.934503 kcal Electronic energy + Delta-G solvation = -29864.774347 eV Core-core repulsion = 25855.025284 eV Total energy + Delta-G solvation = -4009.749064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.59197 -40.72817 -39.06154 -38.32636 -35.91991 -35.47706 -35.20679 -33.05144 -32.14267 -31.44459 -31.23814 -28.84425 -27.31124 -26.23452 -24.55174 -23.81080 -22.80604 -22.62390 -21.76985 -21.16386 -20.30302 -19.33276 -18.04784 -17.72139 -17.48433 -16.97974 -16.73942 -16.66580 -16.54278 -16.24207 -15.41585 -15.30591 -15.23624 -15.05292 -14.66432 -14.62476 -14.47410 -14.13284 -14.02291 -13.90301 -13.51666 -13.41220 -13.12965 -12.85975 -12.85197 -12.70471 -12.60192 -12.58848 -12.27888 -12.19050 -12.01296 -11.95760 -11.92398 -11.68664 -11.60049 -11.49841 -11.09833 -10.85267 -10.68100 -10.06607 -9.77250 -9.40767 -9.36212 -8.65686 -6.38801 0.45550 0.98164 1.36141 1.45286 1.52511 1.69225 1.89211 2.04263 2.18502 2.23411 2.72777 3.53890 3.64387 3.74799 3.83479 3.87583 4.01589 4.02888 4.09978 4.15532 4.25289 4.35670 4.46134 4.53377 4.58717 4.65049 4.72746 4.74097 4.80017 4.80970 4.81977 4.86344 4.93260 4.95801 5.00490 5.08133 5.18658 5.20789 5.26954 5.30128 5.30400 5.45783 5.50240 5.52787 5.61201 5.83647 5.94780 6.02845 6.26104 6.34769 6.59613 6.60408 6.87572 6.93329 7.20362 7.31041 8.30529 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.002244 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.450785 B =12473.815903 C =12588.362329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.134 4.134 4 C 0.507 3.493 5 O -0.585 6.585 6 N -0.717 5.717 7 C 0.152 3.848 8 C -0.126 4.126 9 C 0.109 3.891 10 N -0.604 5.604 11 C 0.563 3.437 12 O -0.586 6.586 13 C -0.131 4.131 14 C -0.204 4.204 15 C -0.095 4.095 16 C -0.217 4.217 17 C 0.070 3.930 18 C -0.496 4.496 19 H 0.084 0.916 20 C 0.028 3.972 21 N -0.826 5.826 22 Si 0.983 3.017 23 H -0.251 1.251 24 H -0.269 1.269 25 H -0.266 1.266 26 C -0.132 4.132 27 C 0.094 3.906 28 C -0.135 4.135 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.415 0.585 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.108 0.892 45 H 0.286 0.714 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.103 0.897 49 H 0.077 0.923 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.915 -9.083 8.880 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.174 4.174 4 C 0.295 3.705 5 O -0.465 6.465 6 N -0.368 5.368 7 C 0.046 3.954 8 C -0.164 4.164 9 C -0.014 4.014 10 N -0.336 5.336 11 C 0.354 3.646 12 O -0.468 6.468 13 C -0.134 4.134 14 C -0.223 4.223 15 C -0.113 4.113 16 C -0.237 4.237 17 C 0.068 3.932 18 C -0.525 4.525 19 H 0.102 0.898 20 C -0.187 4.187 21 N -0.452 5.452 22 Si 0.804 3.196 23 H -0.174 1.174 24 H -0.193 1.193 25 H -0.191 1.191 26 C -0.153 4.153 27 C -0.028 4.028 28 C -0.174 4.174 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.252 0.748 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.126 0.874 45 H 0.097 0.903 46 H 0.113 0.887 47 H 0.104 0.896 48 H 0.121 0.879 49 H 0.096 0.904 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.265 -9.115 9.364 23.279 hybrid contribution 0.375 1.280 -0.486 1.420 sum -18.891 -7.835 8.877 22.294 Atomic orbital electron populations 1.21760 0.93843 1.02292 1.02685 1.21256 0.96603 0.95050 1.01966 1.21768 0.89010 1.00080 1.06507 1.21426 0.91709 0.83030 0.74300 1.90698 1.71635 1.32876 1.51274 1.46049 1.06517 1.09332 1.74935 1.20803 0.80282 0.98591 0.95686 1.22083 0.94303 0.96756 1.03305 1.21674 0.94118 1.03015 0.82564 1.48025 1.42252 1.26481 1.16880 1.18851 0.78464 0.82064 0.85240 1.90674 1.63379 1.26698 1.66024 1.19699 1.04589 0.95444 0.93711 1.20960 1.09205 0.93357 0.98770 1.20916 0.97988 0.98925 0.93437 1.21392 1.08421 0.92907 1.01001 1.17934 0.89484 0.93395 0.92425 1.19882 1.43585 0.93914 0.95102 0.89781 1.26882 0.91381 1.02910 0.97502 1.69921 1.32832 1.23997 1.18428 0.85142 0.78867 0.76704 0.78918 1.17389 1.19340 1.19094 1.21314 1.01276 0.97329 0.95343 1.22361 0.93850 0.86867 0.99697 1.22232 0.94856 1.02693 0.97667 0.92520 0.91588 0.91865 0.93110 0.92784 0.86402 0.86906 0.74845 0.90029 0.87400 0.91244 0.90381 0.89463 0.84742 0.84542 0.87378 0.90326 0.88729 0.89648 0.87860 0.90420 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 71.98 0.71 -0.59 16 2 C -0.11 -1.48 5.22 30.59 0.16 -1.32 16 3 C -0.13 -1.38 5.70 29.85 0.17 -1.21 16 4 C 0.51 9.12 7.79 87.66 0.68 9.81 16 5 O -0.58 -15.93 15.65 -3.06 -0.05 -15.98 16 6 N -0.72 -10.62 5.08 -442.39 -2.25 -12.87 16 7 C 0.15 2.90 2.42 45.02 0.11 3.01 16 8 C -0.13 -2.30 5.55 30.67 0.17 -2.13 16 9 C 0.11 2.76 6.44 86.36 0.56 3.32 16 10 N -0.60 -19.61 2.98 -822.18 -2.45 -22.06 16 11 C 0.56 25.01 7.39 86.80 0.64 25.65 16 12 O -0.59 -30.60 16.22 -3.88 -0.06 -30.66 16 13 C -0.13 -6.25 5.30 -20.14 -0.11 -6.36 16 14 C -0.20 -8.20 7.36 22.70 0.17 -8.04 16 15 C -0.09 -3.80 10.01 22.18 0.22 -3.58 16 16 C -0.22 -10.20 9.78 22.77 0.22 -9.98 16 17 C 0.07 3.80 5.56 -21.32 -0.12 3.68 16 18 C -0.50 -26.91 9.05 23.47 0.21 -26.69 16 19 H 0.08 4.31 7.90 -2.91 -0.02 4.29 16 20 C 0.03 1.46 5.15 85.26 0.44 1.90 16 21 N -0.83 -46.39 10.96 21.83 0.24 -46.15 16 22 Si 0.98 39.39 29.59 68.60 2.03 41.42 16 23 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 24 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 25 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 26 C -0.13 -7.31 8.24 23.01 0.19 -7.12 16 27 C 0.09 2.55 4.75 86.35 0.41 2.97 16 28 C -0.14 -3.13 5.65 30.67 0.17 -2.95 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 33 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 34 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 36 H 0.41 3.72 8.60 -92.71 -0.80 2.92 16 37 H 0.08 1.77 7.58 -2.39 -0.02 1.75 16 38 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 2.32 7.00 -2.39 -0.02 2.31 16 41 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.13 4.46 5.98 -2.91 -0.02 4.44 16 43 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 44 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 45 H 0.29 14.77 8.30 -92.71 -0.77 14.00 16 46 H 0.09 5.81 6.11 -2.91 -0.02 5.79 16 47 H 0.09 2.00 8.04 -2.39 -0.02 1.98 16 48 H 0.10 3.19 4.45 -2.39 -0.01 3.18 16 49 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -74.78 400.77 2.63 -72.15 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.15 Total: 33.80 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 5.01 Total: -19.65 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -4.46 Total: -81.08 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -0.11 Total: -46.64 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -74.78 2.63 -72.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603744183.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.785 kcal (2) G-P(sol) polarization free energy of solvation -74.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds