Wall clock time and date at job start Wed Apr 1 2020 03:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21286 * 119.99900 * 2 1 4 4 N 1.34780 * 120.00375 * 180.02562 * 2 1 3 5 5 C 1.39827 * 124.98295 * 174.80320 * 4 2 1 6 6 C 1.39633 * 129.33060 * 359.97438 * 5 4 2 7 7 C 1.37838 * 120.28496 * 180.02562 * 6 5 4 8 8 C 1.38293 * 120.22024 * 359.97438 * 7 6 5 9 9 C 1.38230 * 119.83309 * 359.97438 * 8 7 6 10 10 C 1.38185 * 120.14426 * 0.02562 * 9 8 7 11 11 C 1.51218 * 130.96951 * 179.97438 * 10 9 8 12 12 C 1.46808 * 124.94826 * 354.71811 * 4 2 1 13 13 H 1.09008 * 110.32932 * 61.10457 * 12 4 2 14 14 C 1.50700 * 110.39441 * 298.88035 * 12 4 2 15 15 O 1.21281 * 119.99647 * 344.33036 * 14 12 4 16 16 N 1.34768 * 120.00297 * 164.33209 * 14 12 4 17 17 C 1.46500 * 120.00156 * 179.97438 * 16 14 12 18 18 C 1.50700 * 109.47354 * 89.99989 * 17 16 14 19 19 H 1.08000 * 119.99374 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99995 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99949 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99831 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46801 * 90.00055 * 22 20 18 24 24 H 1.48498 * 109.47181 * 210.00169 * 22 20 18 25 25 H 1.48505 * 109.46878 * 330.00074 * 22 20 18 26 26 C 1.46505 * 120.00030 * 359.97438 * 16 14 12 27 27 C 1.53004 * 109.47015 * 89.99671 * 26 16 14 28 28 C 1.53003 * 109.46810 * 65.00083 * 27 26 16 29 29 C 1.52997 * 109.46989 * 184.99937 * 27 26 16 30 30 H 1.08997 * 109.46629 * 274.96185 * 1 2 3 31 31 H 1.09002 * 109.47230 * 34.96498 * 1 2 3 32 32 H 1.08998 * 109.46843 * 154.96328 * 1 2 3 33 33 H 1.08002 * 119.86032 * 0.02562 * 6 5 4 34 34 H 1.07997 * 119.89171 * 179.97438 * 7 6 5 35 35 H 1.08009 * 120.08996 * 179.97438 * 8 7 6 36 36 H 1.07996 * 119.92819 * 180.02562 * 9 8 7 37 37 H 1.08994 * 110.41249 * 298.76570 * 11 10 9 38 38 H 1.09001 * 110.41647 * 61.10331 * 11 10 9 39 39 H 1.09002 * 109.47189 * 210.00376 * 17 16 14 40 40 H 1.09003 * 109.47025 * 329.99597 * 17 16 14 41 41 H 0.97007 * 119.99726 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.47041 * 209.99841 * 26 16 14 43 43 H 1.09001 * 109.46932 * 330.00363 * 26 16 14 44 44 H 1.08997 * 109.47346 * 305.00376 * 27 26 16 45 45 H 1.09003 * 109.47019 * 179.97438 * 28 27 26 46 46 H 1.08999 * 109.47470 * 300.00159 * 28 27 26 47 47 H 1.09000 * 109.47383 * 60.00274 * 28 27 26 48 48 H 1.08991 * 109.47015 * 60.00538 * 29 27 26 49 49 H 1.09003 * 109.47020 * 180.02562 * 29 27 26 50 50 H 1.09000 * 109.47401 * 299.99846 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5699 -1.2909 -0.1043 6 6 4.5405 -0.2944 -0.2261 7 6 5.8742 -0.6305 -0.3165 8 6 6.2611 -1.9578 -0.2866 9 6 5.3063 -2.9499 -0.1652 10 6 3.9680 -2.6176 -0.0743 11 6 2.7379 -3.4863 0.0628 12 6 1.5639 -2.4947 0.1097 13 1 0.8869 -2.6682 -0.7269 14 6 0.8251 -2.6235 1.4168 15 8 1.0325 -1.8311 2.3112 16 7 -0.0660 -3.6193 1.5920 17 6 -0.7838 -3.7448 2.8629 18 6 -2.0633 -2.9512 2.7978 19 1 -2.3166 -2.4081 1.8993 20 6 -2.9108 -2.9195 3.8848 21 7 -2.6025 -3.5814 4.9786 22 14 -4.4972 -1.9364 3.8038 23 1 -5.5899 -2.8014 3.2909 24 1 -4.8476 -1.4493 5.1622 25 1 -4.3150 -0.7770 2.8939 26 6 -0.3170 -4.5762 0.5114 27 6 0.6449 -5.7587 0.6438 28 6 0.3428 -6.5195 1.9364 29 6 0.4686 -6.6959 -0.5526 30 1 -0.3632 0.0889 1.0238 31 1 -0.3634 0.8422 -0.5889 32 1 -0.3633 -0.9311 -0.4349 33 1 4.2449 0.7441 -0.2497 34 1 6.6195 0.1454 -0.4109 35 1 7.3068 -2.2188 -0.3580 36 1 5.6068 -3.9869 -0.1413 37 1 2.6412 -4.1471 -0.7986 38 1 2.7835 -4.0675 0.9837 39 1 -1.0158 -4.7938 3.0471 40 1 -0.1603 -3.3633 3.6715 41 1 -3.1987 -3.5587 5.7435 42 1 -1.3444 -4.9346 0.5748 43 1 -0.1613 -4.0873 -0.4503 44 1 1.6708 -5.3915 0.6696 45 1 1.0277 -7.3622 2.0306 46 1 0.4683 -5.8518 2.7888 47 1 -0.6831 -6.8868 1.9107 48 1 0.6838 -6.1540 -1.4735 49 1 1.1535 -7.5386 -0.4581 50 1 -0.5574 -7.0632 -0.5784 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726530555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:21 Heat of formation + Delta-G solvation = -36.031848 kcal Electronic energy + Delta-G solvation = -32037.763758 eV Core-core repulsion = 28030.091909 eV Total energy + Delta-G solvation = -4007.671849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.50025 -39.14967 -38.56054 -36.63318 -36.00941 -33.67208 -32.57180 -32.29088 -30.94067 -29.66767 -28.63130 -27.67529 -26.92431 -25.67560 -24.34555 -23.35447 -22.44155 -21.53033 -20.34454 -19.79244 -18.47629 -17.31605 -17.15465 -16.62125 -16.52775 -15.82400 -15.38219 -15.08969 -14.92082 -14.56111 -14.51951 -14.18373 -14.16266 -13.81114 -13.48281 -13.31399 -13.04360 -12.81209 -12.56522 -12.51161 -12.39035 -12.25618 -12.17577 -12.06213 -11.84448 -11.65998 -11.58680 -11.44044 -11.10673 -11.05654 -10.99717 -10.81497 -10.50905 -10.42420 -10.34330 -10.21588 -9.79532 -9.68670 -9.11677 -8.80756 -8.50091 -7.82512 -7.75579 -6.12281 -4.17297 1.26742 1.38187 2.56963 2.78700 3.11118 3.24365 3.32484 3.34876 3.63187 3.87122 4.22990 4.35956 4.43679 4.65469 4.70409 4.88382 4.96961 5.02176 5.06246 5.09972 5.21670 5.23715 5.26949 5.30109 5.40538 5.53998 5.57687 5.60365 5.64479 5.66317 5.75248 5.79284 5.96720 6.01842 6.04631 6.06522 6.07193 6.21565 6.26130 6.40492 6.41703 6.46748 6.54327 6.60514 6.93481 7.02715 7.31515 7.33111 7.41156 7.82825 8.07789 8.13629 8.20572 8.74194 8.90100 9.47940 10.95678 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011137 B = 0.004201 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.536214 B = 6663.285967 C = 8290.435456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.539 3.461 3 O -0.528 6.528 4 N -0.537 5.537 5 C 0.159 3.841 6 C -0.133 4.133 7 C -0.095 4.095 8 C -0.148 4.148 9 C -0.077 4.077 10 C -0.138 4.138 11 C -0.073 4.073 12 C 0.109 3.891 13 H 0.111 0.889 14 C 0.495 3.505 15 O -0.522 6.522 16 N -0.585 5.585 17 C 0.243 3.757 18 C -0.529 4.529 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.892 5.892 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.110 3.890 27 C -0.124 4.124 28 C -0.149 4.149 29 C -0.144 4.144 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.264 0.736 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.046 0.954 46 H 0.068 0.932 47 H 0.057 0.943 48 H 0.052 0.948 49 H 0.054 0.946 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.309 -4.909 -14.683 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.332 3.668 3 O -0.404 6.404 4 N -0.259 5.259 5 C 0.063 3.937 6 C -0.153 4.153 7 C -0.113 4.113 8 C -0.167 4.167 9 C -0.096 4.096 10 C -0.141 4.141 11 C -0.110 4.110 12 C 0.002 3.998 13 H 0.128 0.872 14 C 0.279 3.721 15 O -0.398 6.398 16 N -0.316 5.316 17 C 0.124 3.876 18 C -0.568 4.568 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.531 5.531 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.015 4.015 27 C -0.144 4.144 28 C -0.206 4.206 29 C -0.202 4.202 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.156 0.844 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.461 -3.846 -13.974 18.477 hybrid contribution -1.140 0.364 0.149 1.206 sum 10.322 -3.482 -13.824 17.600 Atomic orbital electron populations 1.21938 0.90082 1.04398 1.06524 1.20779 0.90904 0.81459 0.73691 1.90644 1.70749 1.30417 1.48554 1.45770 1.04610 1.06620 1.68920 1.18393 0.83352 0.94467 0.97446 1.20937 0.91449 0.99520 1.03429 1.20901 0.94964 0.96489 0.98967 1.20963 0.99117 0.92739 1.03845 1.20312 0.90395 0.99596 0.99279 1.19974 0.94600 0.93066 1.06504 1.21151 0.89127 0.96387 1.04347 1.21880 0.96659 0.82408 0.98873 0.87189 1.20220 0.80793 0.82597 0.88496 1.90743 1.64668 1.41522 1.42864 1.48217 1.39402 1.26733 1.17288 1.19465 0.91120 0.97854 0.79111 1.21387 1.04469 1.30835 1.00062 0.92465 1.24907 0.98328 0.95548 0.95119 1.69920 1.37485 1.41866 1.03815 0.86539 0.83265 0.80360 0.77520 1.20627 1.21099 1.19863 1.21667 1.00508 0.89577 0.89719 1.21804 1.00321 0.96135 0.96091 1.21931 1.01358 0.99741 0.97608 1.21781 1.02060 0.99119 0.97214 0.87071 0.88584 0.90451 0.84444 0.85665 0.85795 0.85772 0.88216 0.88330 0.93846 0.94032 0.92654 0.89386 0.91791 0.90774 0.93495 0.91288 0.92436 0.92883 0.92680 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 8.99 36.01 0.32 -2.30 16 2 C 0.54 9.64 7.24 -10.98 -0.08 9.56 16 3 O -0.53 -10.58 15.29 5.55 0.08 -10.49 16 4 N -0.54 -8.93 2.61 -106.88 -0.28 -9.21 16 5 C 0.16 2.54 6.62 -83.57 -0.55 1.98 16 6 C -0.13 -2.01 9.46 -39.21 -0.37 -2.38 16 7 C -0.09 -1.14 10.02 -39.71 -0.40 -1.53 16 8 C -0.15 -1.58 10.06 -39.56 -0.40 -1.98 16 9 C -0.08 -0.87 10.04 -39.60 -0.40 -1.27 16 10 C -0.14 -1.86 6.23 -104.27 -0.65 -2.51 16 11 C -0.07 -0.88 4.75 -27.24 -0.13 -1.01 16 12 C 0.11 1.58 2.08 -68.53 -0.14 1.44 16 13 H 0.11 1.28 5.99 -51.92 -0.31 0.97 16 14 C 0.50 9.37 5.62 -10.99 -0.06 9.31 16 15 O -0.52 -12.56 15.38 5.56 0.09 -12.47 16 16 N -0.59 -10.81 2.28 -175.05 -0.40 -11.20 16 17 C 0.24 5.77 4.23 -5.19 -0.02 5.75 16 18 C -0.53 -13.90 9.39 -34.44 -0.32 -14.22 16 19 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 22 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.11 1.49 4.63 -4.04 -0.02 1.47 16 27 C -0.12 -1.42 3.00 -90.62 -0.27 -1.69 16 28 C -0.15 -1.99 8.18 37.16 0.30 -1.69 16 29 C -0.14 -1.26 9.19 37.16 0.34 -0.92 16 30 H 0.11 1.99 8.06 -51.93 -0.42 1.58 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.05 6.77 -51.93 -0.35 0.70 16 33 H 0.14 2.25 6.30 -52.49 -0.33 1.92 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.10 0.87 7.98 -51.93 -0.41 0.45 16 38 H 0.10 1.25 6.26 -51.93 -0.33 0.93 16 39 H 0.04 1.03 5.98 -51.93 -0.31 0.72 16 40 H 0.04 1.16 7.42 -51.93 -0.39 0.77 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 43 H 0.06 0.69 6.01 -51.93 -0.31 0.38 16 44 H 0.07 0.81 4.50 -51.93 -0.23 0.58 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 1.13 5.89 -51.93 -0.31 0.83 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 393.25 15.07 5.93 5.93 Total: -1.00 -33.63 393.25 -9.28 -42.91 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.47 Total: 3.61 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.94 Total: -0.36 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.06 Total: -45.09 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.17 Total: -22.96 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.63 -9.28 -42.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726530555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.877 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds