Wall clock time and date at job start Wed Apr 1 2020 05:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35689 * 117.00202 * 2 1 4 4 C 1.38616 * 120.15720 * 0.27615 * 3 2 1 5 5 C 1.38127 * 120.10687 * 180.28074 * 4 3 2 6 6 C 1.38570 * 120.43583 * 359.71560 * 5 4 3 7 7 C 1.37755 * 120.32209 * 0.02562 * 6 5 4 8 8 C 1.39930 * 119.87703 * 0.02562 * 7 6 5 9 9 C 1.46951 * 120.21084 * 179.97438 * 8 7 6 10 10 C 1.50697 * 120.00044 * 255.00160 * 9 8 7 11 11 C 1.34999 * 119.99722 * 75.00289 * 9 8 7 12 12 C 1.46239 * 119.99930 * 172.67052 * 11 9 8 13 13 O 1.21717 * 120.00023 * 353.91765 * 12 11 9 14 14 N 1.34776 * 119.99952 * 173.92483 * 12 11 9 15 15 C 1.46502 * 119.99597 * 179.97438 * 14 12 11 16 16 C 1.53041 * 109.45844 * 155.00117 * 15 14 12 17 17 C 1.53186 * 109.31453 * 181.38553 * 16 15 14 18 18 N 1.46923 * 108.89378 * 305.29072 * 17 16 15 19 19 C 1.36943 * 120.63308 * 233.67313 * 18 17 16 20 20 H 1.07993 * 119.99748 * 32.29825 * 19 18 17 21 21 C 1.38814 * 119.99861 * 212.29351 * 19 18 17 22 22 N 1.31614 * 120.00106 * 12.43380 * 21 19 18 23 23 Si 1.86801 * 119.99526 * 192.43479 * 21 19 18 24 24 H 1.48499 * 109.47449 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47065 * 120.00607 * 23 21 19 26 26 H 1.48504 * 109.46795 * 240.00247 * 23 21 19 27 27 C 1.47205 * 118.55621 * 53.53837 * 18 17 16 28 28 C 1.53044 * 109.46155 * 275.06273 * 15 14 12 29 29 H 1.09005 * 109.47178 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47544 * 300.00322 * 1 2 3 31 31 H 1.09004 * 109.47139 * 60.00071 * 1 2 3 32 32 H 1.07997 * 119.94646 * 359.97037 * 4 3 2 33 33 H 1.08000 * 119.78296 * 179.74371 * 5 4 3 34 34 H 1.08000 * 119.83901 * 180.02562 * 6 5 4 35 35 H 1.07998 * 120.06188 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47017 * 266.44513 * 10 9 8 37 37 H 1.08997 * 109.47045 * 26.44111 * 10 9 8 38 38 H 1.08996 * 109.47090 * 146.44394 * 10 9 8 39 39 H 1.08001 * 120.00042 * 352.66339 * 11 9 8 40 40 H 0.97001 * 120.00153 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.45151 * 35.03334 * 15 14 12 42 42 H 1.09004 * 109.49715 * 61.43094 * 16 15 14 43 43 H 1.09003 * 109.49487 * 301.33628 * 16 15 14 44 44 H 1.08994 * 109.58952 * 65.15069 * 17 16 15 45 45 H 1.09007 * 109.59001 * 185.43284 * 17 16 15 46 46 H 0.97003 * 119.99568 * 179.97438 * 22 21 19 47 47 H 1.08993 * 109.53844 * 186.67343 * 27 18 17 48 48 H 1.09005 * 109.67378 * 66.36410 * 27 18 17 49 49 H 1.09002 * 109.49840 * 298.57270 * 28 15 14 50 50 H 1.09004 * 109.49266 * 58.66682 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2933 2.3736 0.0058 5 6 1.9215 3.6038 -0.0001 6 6 3.3048 3.6856 -0.0058 7 6 4.0692 2.5396 -0.0063 8 6 3.4467 1.2864 -0.0015 9 6 4.2551 0.0592 -0.0025 10 6 4.3824 -0.7582 -1.2621 11 6 4.8836 -0.3360 1.1250 12 6 5.5541 -1.6348 1.1716 13 8 5.4526 -2.4059 0.2353 14 7 6.2842 -1.9779 2.2512 15 6 6.9554 -3.2793 2.2980 16 6 8.1565 -3.1998 3.2431 17 6 8.8760 -4.5520 3.2628 18 7 7.9077 -5.6012 3.6093 19 6 8.1514 -6.4604 4.6474 20 1 8.7080 -6.1223 5.5089 21 6 7.6830 -7.7660 4.5923 22 7 7.2245 -8.2533 3.4590 23 14 7.7036 -8.8311 6.1268 24 1 8.2639 -8.0539 7.2614 25 1 6.3186 -9.2558 6.4531 26 1 8.5452 -10.0305 5.8855 27 6 6.6704 -5.7057 2.8187 28 6 5.9756 -4.3405 2.8039 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 0.2147 2.3191 0.0098 33 1 1.3307 4.5078 0.0003 34 1 3.7859 4.6525 -0.0100 35 1 5.1470 2.6082 -0.0104 36 1 3.6242 -1.5412 -1.2653 37 1 4.2422 -0.1131 -2.1295 38 1 5.3729 -1.2113 -1.3026 39 1 4.8913 0.3071 1.9927 40 1 6.3653 -1.3632 2.9972 41 1 7.2971 -3.5476 1.2983 42 1 7.8129 -2.9557 4.2483 43 1 8.8426 -2.4276 2.8951 44 1 9.2988 -4.7554 2.2790 45 1 9.6734 -4.5308 4.0058 46 1 6.8975 -9.1658 3.4205 47 1 6.0107 -6.4466 3.2703 48 1 6.9110 -6.0043 1.7983 49 1 5.6525 -4.0857 3.8133 50 1 5.1094 -4.3802 2.1433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730504782.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:49 Heat of formation + Delta-G solvation = -12.405720 kcal Electronic energy + Delta-G solvation = -29630.161022 eV Core-core repulsion = 25623.513679 eV Total energy + Delta-G solvation = -4006.647343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.57219 -39.61730 -37.81028 -37.32085 -35.03388 -34.17151 -32.10615 -30.71670 -30.32548 -29.94281 -29.49674 -27.64100 -27.49650 -24.99058 -23.78962 -22.40159 -22.17780 -22.02724 -20.59246 -19.64514 -18.88216 -18.11506 -16.86722 -16.72202 -16.40780 -16.10787 -15.94402 -15.38805 -14.86279 -14.71596 -14.63997 -14.19492 -13.96527 -13.85729 -13.61393 -13.44182 -13.12341 -12.90861 -12.86638 -12.64141 -12.38937 -12.28678 -12.22963 -11.88478 -11.65916 -11.47264 -11.41147 -11.25173 -11.04560 -10.84523 -10.73279 -10.32310 -10.16255 -10.02727 -9.71533 -9.63275 -9.37489 -9.25675 -9.07980 -8.56820 -8.45961 -8.34386 -6.57519 -5.74917 -3.23079 0.81234 1.07046 1.36667 2.93317 3.33136 3.38797 3.46230 3.48404 3.50667 3.59634 4.35070 4.48031 4.51592 4.62507 4.73329 4.81030 4.94067 4.97956 5.02610 5.17256 5.20634 5.27551 5.39826 5.46848 5.51351 5.53860 5.63446 5.70810 5.84359 5.88425 5.90943 5.98185 6.08481 6.15491 6.16145 6.31198 6.35126 6.40658 6.44044 6.52334 6.56851 6.70490 6.71995 6.85458 6.99510 7.05253 7.05493 7.43003 7.72902 7.83325 7.89276 8.51493 8.58312 9.25355 9.87065 10.47047 11.33659 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.002041 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.721650 B =13717.430551 C =14319.626971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.146 3.854 4 C -0.210 4.210 5 C -0.078 4.078 6 C -0.158 4.158 7 C -0.066 4.066 8 C -0.094 4.094 9 C 0.018 3.982 10 C -0.116 4.116 11 C -0.213 4.213 12 C 0.542 3.458 13 O -0.538 6.538 14 N -0.722 5.722 15 C 0.152 3.848 16 C -0.139 4.139 17 C 0.148 3.852 18 N -0.593 5.593 19 C -0.254 4.254 20 H 0.064 0.936 21 C 0.005 3.995 22 N -0.901 5.901 23 Si 0.903 3.097 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.176 3.824 28 C -0.146 4.146 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.394 0.606 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.057 0.943 46 H 0.254 0.746 47 H 0.084 0.916 48 H 0.021 0.979 49 H 0.053 0.947 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.686 25.687 -7.510 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.100 3.900 4 C -0.228 4.228 5 C -0.096 4.096 6 C -0.176 4.176 7 C -0.084 4.084 8 C -0.094 4.094 9 C 0.016 3.984 10 C -0.172 4.172 11 C -0.234 4.234 12 C 0.332 3.668 13 O -0.418 6.418 14 N -0.371 5.371 15 C 0.049 3.951 16 C -0.179 4.179 17 C 0.021 3.979 18 N -0.316 5.316 19 C -0.384 4.384 20 H 0.082 0.918 21 C -0.194 4.194 22 N -0.545 5.545 23 Si 0.733 3.267 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.049 3.951 28 C -0.186 4.186 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.141 0.859 40 H 0.227 0.773 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.103 0.897 48 H 0.040 0.960 49 H 0.072 0.928 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.717 24.726 -8.190 28.561 hybrid contribution -0.419 -0.015 1.273 1.340 sum -12.136 24.711 -6.917 28.386 Atomic orbital electron populations 1.23114 0.78197 1.04377 1.01208 1.86133 1.21393 1.26364 1.87892 1.19106 0.91082 0.84590 0.95246 1.21185 1.00105 0.92187 1.09369 1.21025 0.94727 0.96920 0.96933 1.20982 0.93801 0.98436 1.04390 1.21177 1.00067 0.90286 0.96848 1.18282 0.89747 0.93610 1.07806 1.20821 0.90249 0.91711 0.95579 1.21101 1.05118 0.98533 0.92453 1.22739 1.04251 0.97352 0.99082 1.18198 0.78963 0.87058 0.82598 1.90788 1.62000 1.53083 1.35948 1.46222 1.51437 1.19821 1.19668 1.21002 0.92482 0.81493 1.00167 1.22332 0.96540 1.00132 0.98861 1.20843 0.91983 0.87003 0.98049 1.44108 1.16315 1.34622 1.36508 1.19174 1.33886 0.90210 0.95129 0.91843 1.25200 1.01279 0.96436 0.96520 1.70011 1.45769 1.15106 1.23609 0.86219 0.77331 0.80401 0.82777 1.20239 1.21586 1.21664 1.20755 0.87906 0.91731 0.94668 1.22553 0.98038 0.98202 0.99818 0.87913 0.92582 0.92608 0.85228 0.85742 0.85598 0.84963 0.89945 0.93093 0.88720 0.85927 0.77295 0.90075 0.91968 0.92695 0.96240 0.92434 0.93633 0.89748 0.96049 0.92828 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.38 9.95 -18.77 -0.19 -3.57 16 3 C 0.15 1.53 6.70 -38.64 -0.26 1.27 16 4 C -0.21 -1.71 9.03 -39.48 -0.36 -2.07 16 5 C -0.08 -0.55 10.03 -39.50 -0.40 -0.95 16 6 C -0.16 -1.16 10.02 -39.64 -0.40 -1.55 16 7 C -0.07 -0.57 9.79 -39.12 -0.38 -0.96 16 8 C -0.09 -1.01 5.27 -104.93 -0.55 -1.57 16 9 C 0.02 0.23 5.00 -102.25 -0.51 -0.28 16 10 C -0.12 -1.53 8.52 36.00 0.31 -1.22 16 11 C -0.21 -2.72 9.70 -37.52 -0.36 -3.09 16 12 C 0.54 8.59 7.56 -13.05 -0.10 8.49 16 13 O -0.54 -10.30 12.98 5.17 0.07 -10.23 16 14 N -0.72 -10.80 5.07 -55.21 -0.28 -11.08 16 15 C 0.15 2.75 2.42 -67.89 -0.16 2.58 16 16 C -0.14 -2.38 5.55 -26.61 -0.15 -2.53 16 17 C 0.15 3.13 6.50 -3.72 -0.02 3.11 16 18 N -0.59 -15.11 2.99 -172.10 -0.51 -15.62 16 19 C -0.25 -7.04 9.56 -15.06 -0.14 -7.19 16 20 H 0.06 1.72 7.86 -52.49 -0.41 1.31 16 21 C 0.00 0.13 5.00 -17.43 -0.09 0.05 16 22 N -0.90 -26.71 11.25 55.49 0.62 -26.09 16 23 Si 0.90 21.90 29.57 -169.99 -5.03 16.88 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 C 0.18 4.38 5.27 -3.56 -0.02 4.36 16 28 C -0.15 -3.02 5.65 -26.61 -0.15 -3.17 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 31 H 0.06 0.29 7.67 -51.93 -0.40 -0.11 16 32 H 0.13 0.78 6.30 -52.49 -0.33 0.45 16 33 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 37 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 38 H 0.09 1.40 6.03 -51.93 -0.31 1.09 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.39 4.74 8.58 -40.82 -0.35 4.39 16 41 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.08 2.34 6.27 -51.93 -0.33 2.02 16 48 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 404.14 15.07 6.09 6.09 Total: -1.00 -33.32 404.14 -9.94 -43.27 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.96 Total: 3.90 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.76 Total: -3.54 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.17 Total: -52.80 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.12 Total: -13.80 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.32 -9.94 -43.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730504782.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.862 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds