Wall clock time and date at job start Wed Apr 1 2020 03:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47032 * 2 1 4 4 C 1.53002 * 109.47189 * 119.99775 * 2 1 3 5 5 N 1.46494 * 109.47118 * 175.18196 * 4 2 1 6 6 C 1.46505 * 119.99904 * 275.56372 * 5 4 2 7 7 C 1.50692 * 109.47105 * 277.17290 * 6 5 4 8 8 H 1.07999 * 120.00214 * 0.02562 * 7 6 5 9 9 C 1.37883 * 120.00116 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99932 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99771 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.46741 * 89.99803 * 11 9 7 13 13 H 1.48502 * 109.47011 * 209.99536 * 11 9 7 14 14 H 1.48492 * 109.47240 * 329.99762 * 11 9 7 15 15 C 1.34776 * 120.00327 * 95.56097 * 5 4 2 16 16 O 1.21280 * 120.00057 * 5.18765 * 15 5 4 17 17 C 1.50702 * 120.00063 * 185.18312 * 15 5 4 18 18 H 1.09006 * 109.36123 * 319.66886 * 17 15 5 19 19 C 1.52669 * 109.25653 * 199.99907 * 17 15 5 20 20 N 1.46138 * 110.92109 * 290.54398 * 19 17 15 21 21 C 1.46496 * 119.48565 * 139.87328 * 20 19 17 22 22 C 1.34656 * 121.02411 * 319.86649 * 20 19 17 23 23 O 1.21558 * 120.31074 * 187.48850 * 22 20 19 24 24 C 1.47822 * 119.38285 * 7.49595 * 22 20 19 25 25 C 1.39229 * 121.10003 * 192.81396 * 24 22 20 26 26 C 1.38062 * 119.66636 * 179.79315 * 25 24 22 27 27 C 1.38386 * 120.14835 * 359.97438 * 26 25 24 28 28 C 1.38416 * 120.40118 * 0.37253 * 27 26 25 29 29 C 1.37825 * 119.98862 * 0.03841 * 28 27 26 30 30 H 1.09013 * 109.47040 * 300.00377 * 1 2 3 31 31 H 1.08996 * 109.47166 * 59.99899 * 1 2 3 32 32 H 1.08992 * 109.47218 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46833 * 239.99707 * 2 1 3 34 34 H 1.08998 * 109.46803 * 186.06200 * 3 2 1 35 35 H 1.09003 * 109.46975 * 306.05183 * 3 2 1 36 36 H 1.09000 * 109.47352 * 66.05870 * 3 2 1 37 37 H 1.08996 * 109.47412 * 55.17734 * 4 2 1 38 38 H 1.09004 * 109.46837 * 295.18118 * 4 2 1 39 39 H 1.09003 * 109.46856 * 37.17252 * 6 5 4 40 40 H 1.09000 * 109.47033 * 157.17224 * 6 5 4 41 41 H 0.97002 * 119.99503 * 180.02562 * 10 9 7 42 42 H 1.08996 * 109.19080 * 50.91915 * 19 17 15 43 43 H 1.09009 * 109.18410 * 170.22153 * 19 17 15 44 44 H 1.08996 * 109.47450 * 89.99945 * 21 20 19 45 45 H 1.08996 * 109.47022 * 209.99994 * 21 20 19 46 46 H 1.09006 * 109.47311 * 329.99413 * 21 20 19 47 47 H 1.08003 * 120.16857 * 359.76469 * 25 24 22 48 48 H 1.08007 * 119.92721 * 180.02562 * 26 25 24 49 49 H 1.07998 * 119.80112 * 180.39917 * 27 26 25 50 50 H 1.07997 * 120.00424 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5004 -0.8225 1.1927 6 6 4.1304 -1.9221 0.4576 7 6 4.1770 -3.1488 1.3316 8 1 3.7770 -3.1132 2.3341 9 6 4.7295 -4.3171 0.8510 10 7 4.7697 -5.3879 1.6136 11 14 5.4209 -4.3790 -0.8833 12 1 6.8571 -4.0025 -0.8572 13 1 5.2795 -5.7550 -1.4236 14 1 4.6756 -3.4288 -1.7474 15 6 4.2643 0.0959 1.8167 16 8 3.7457 0.9512 2.5026 17 6 5.7630 0.0600 1.6623 18 1 6.1045 -0.9747 1.6909 19 6 6.4060 0.8372 2.8083 20 7 6.1452 2.2692 2.6786 21 6 5.8358 3.0570 3.8744 22 6 6.1851 2.8759 1.4771 23 8 6.1013 4.0860 1.3978 24 6 6.3317 2.0567 0.2555 25 6 6.6406 2.6414 -0.9697 26 6 6.7748 1.8475 -2.0913 27 6 6.6035 0.4775 -1.9976 28 6 6.2892 -0.1077 -0.7832 29 6 6.1443 0.6752 0.3418 30 1 -0.3634 0.5140 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1246 1.4444 -0.1085 35 1 1.5909 1.9867 -0.8309 36 1 1.7679 1.9241 0.9392 37 1 1.6079 -1.7209 1.2936 38 1 1.7489 -0.1599 2.1371 39 1 3.5515 -2.1375 -0.4404 40 1 5.1444 -1.6374 0.1767 41 1 5.1588 -6.2097 1.2756 42 1 5.9978 0.4830 3.7548 43 1 7.4827 0.6672 2.7966 44 1 6.7596 3.4464 4.3021 45 1 5.1826 3.8866 3.6039 46 1 5.3347 2.4241 4.6069 47 1 6.7742 3.7106 -1.0426 48 1 7.0148 2.2966 -3.0438 49 1 6.7161 -0.1389 -2.8772 50 1 6.1573 -1.1776 -0.7173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787248884.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:42 Heat of formation + Delta-G solvation = -35.541040 kcal Electronic energy + Delta-G solvation = -32816.461320 eV Core-core repulsion = 28808.810755 eV Total energy + Delta-G solvation = -4007.650566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.07777 -39.16655 -38.19047 -36.51451 -35.50534 -34.36712 -32.75363 -32.33113 -31.20119 -29.28961 -28.24120 -27.15659 -26.85988 -26.04403 -24.05709 -23.11737 -22.52205 -21.95235 -20.13918 -19.18582 -18.16588 -17.60725 -17.00542 -16.87611 -16.51789 -15.73724 -15.33969 -15.19464 -14.91875 -14.64127 -14.35394 -14.31203 -14.06991 -13.68895 -13.47845 -13.36169 -12.97469 -12.76564 -12.61362 -12.45431 -12.33170 -12.24808 -12.15235 -11.97732 -11.83025 -11.70597 -11.52604 -11.36664 -11.07765 -10.98225 -10.95051 -10.63606 -10.55010 -10.33168 -10.25911 -9.77004 -9.66813 -9.49211 -8.96235 -8.84188 -8.66305 -8.36690 -7.78693 -6.32216 -4.34045 0.88486 1.33407 2.93994 3.04530 3.10772 3.13146 3.16734 3.22299 3.64094 3.94617 4.14827 4.56104 4.65238 4.72814 4.90785 4.96834 5.00367 5.07443 5.18240 5.24338 5.32845 5.40145 5.42116 5.46006 5.55879 5.65604 5.70748 5.75534 5.84098 5.88443 5.93222 5.94965 5.96089 5.98710 6.10673 6.22036 6.27977 6.29728 6.33840 6.36854 6.44877 6.47466 6.57520 6.58274 6.60380 6.69563 6.89962 7.23361 7.34716 7.49708 8.00980 8.29854 8.32004 8.71061 8.80336 9.26582 10.80405 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.005334 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.935298 B = 5248.448708 C = 5880.051900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 C -0.134 4.134 4 C 0.124 3.876 5 N -0.582 5.582 6 C 0.194 3.806 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.078 3.922 10 N -0.888 5.888 11 Si 0.859 3.141 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.261 1.261 15 C 0.529 3.471 16 O -0.550 6.550 17 C -0.098 4.098 18 H 0.135 0.865 19 C 0.137 3.863 20 N -0.593 5.593 21 C 0.097 3.903 22 C 0.567 3.433 23 O -0.545 6.545 24 C -0.127 4.127 25 C -0.062 4.062 26 C -0.131 4.131 27 C -0.093 4.093 28 C -0.124 4.124 29 C -0.035 4.035 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.032 0.968 40 H 0.043 0.957 41 H 0.267 0.733 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.049 0.951 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.133 0.867 48 H 0.128 0.872 49 H 0.128 0.872 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.364 10.526 -4.322 11.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.192 4.192 4 C 0.001 3.999 5 N -0.311 5.311 6 C 0.073 3.927 7 C -0.581 4.581 8 H 0.097 0.903 9 C -0.126 4.126 10 N -0.525 5.525 11 Si 0.685 3.315 12 H -0.195 1.195 13 H -0.206 1.206 14 H -0.186 1.186 15 C 0.316 3.684 16 O -0.429 6.429 17 C -0.120 4.120 18 H 0.153 0.847 19 C 0.013 3.987 20 N -0.324 5.324 21 C -0.045 4.045 22 C 0.356 3.644 23 O -0.425 6.425 24 C -0.130 4.130 25 C -0.080 4.080 26 C -0.149 4.149 27 C -0.111 4.111 28 C -0.141 4.141 29 C -0.036 4.036 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.151 0.849 48 H 0.146 0.854 49 H 0.145 0.855 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.082 11.374 -3.952 12.219 hybrid contribution 0.343 -0.719 -1.016 1.291 sum 2.424 10.654 -4.968 12.003 Atomic orbital electron populations 1.21742 0.95053 1.01666 1.01442 1.21496 0.95480 0.96781 0.99358 1.21720 1.00765 0.95572 1.01099 1.21412 0.80201 1.00882 0.97455 1.47778 1.05884 1.26137 1.51288 1.20220 0.93935 0.85631 0.92928 1.21376 1.41161 0.93621 1.01978 0.90258 1.24862 0.95254 0.95363 0.97083 1.69880 1.44303 1.01752 1.36537 0.87113 0.80270 0.78598 0.85546 1.19452 1.20627 1.18551 1.19853 0.87812 0.81249 0.79485 1.90628 1.74251 1.37702 1.40324 1.20745 0.95109 1.03191 0.92920 0.84689 1.21229 0.99540 0.79229 0.98700 1.47215 1.69171 1.08852 1.07132 1.21566 1.00146 0.96380 0.86423 1.18042 0.76090 0.86945 0.83303 1.90715 1.51036 1.13882 1.86838 1.19755 1.05815 0.92951 0.94484 1.21101 0.95759 1.00351 0.90838 1.21141 1.01553 0.93757 0.98404 1.21365 0.97060 0.95029 0.97624 1.21455 0.99626 1.01022 0.92023 1.19623 0.97157 0.92422 0.94378 0.92755 0.92946 0.92533 0.91311 0.93316 0.93791 0.92504 0.90232 0.90432 0.95054 0.94011 0.92252 0.88708 0.90769 0.93229 0.90963 0.90911 0.84873 0.85420 0.85451 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.19 37.16 0.34 -1.47 16 2 C -0.11 -1.72 3.12 -90.62 -0.28 -2.01 16 3 C -0.13 -2.16 8.16 37.16 0.30 -1.86 16 4 C 0.12 2.18 4.99 -4.04 -0.02 2.16 16 5 N -0.58 -11.12 2.27 -175.06 -0.40 -11.52 16 6 C 0.19 3.94 3.86 -5.19 -0.02 3.92 16 7 C -0.54 -13.34 9.92 -34.44 -0.34 -13.69 16 8 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 9 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 10 N -0.89 -24.55 13.96 55.43 0.77 -23.77 16 11 Si 0.86 18.26 27.42 -169.99 -4.66 13.60 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.26 -5.20 6.54 56.52 0.37 -4.83 16 15 C 0.53 9.92 5.43 -10.98 -0.06 9.86 16 16 O -0.55 -11.10 14.30 5.56 0.08 -11.02 16 17 C -0.10 -1.61 2.08 -93.15 -0.19 -1.80 16 18 H 0.14 2.24 6.80 -51.93 -0.35 1.89 16 19 C 0.14 1.97 5.43 -4.41 -0.02 1.94 16 20 N -0.59 -9.31 2.27 -183.23 -0.42 -9.73 16 21 C 0.10 1.33 10.37 59.84 0.62 1.95 16 22 C 0.57 9.96 7.50 -12.39 -0.09 9.87 16 23 O -0.55 -10.75 16.18 5.31 0.09 -10.66 16 24 C -0.13 -2.05 5.80 -105.07 -0.61 -2.66 16 25 C -0.06 -0.87 9.63 -39.28 -0.38 -1.24 16 26 C -0.13 -1.56 10.04 -39.59 -0.40 -1.96 16 27 C -0.09 -1.17 10.04 -39.46 -0.40 -1.57 16 28 C -0.12 -1.85 8.83 -39.67 -0.35 -2.20 16 29 C -0.03 -0.55 4.88 -104.29 -0.51 -1.06 16 30 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.10 8.01 -51.93 -0.42 0.69 16 34 H 0.05 0.88 7.05 -51.93 -0.37 0.51 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 37 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 38 H 0.08 1.41 7.21 -51.93 -0.37 1.04 16 39 H 0.03 0.65 7.04 -51.93 -0.37 0.29 16 40 H 0.04 0.80 1.58 -51.93 -0.08 0.72 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.09 1.30 7.67 -51.93 -0.40 0.90 16 43 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.07 1.08 7.51 -51.93 -0.39 0.69 16 46 H 0.07 0.91 7.79 -51.93 -0.40 0.50 16 47 H 0.13 1.77 7.79 -52.48 -0.41 1.36 16 48 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 49 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 50 H 0.14 2.22 5.41 -52.49 -0.28 1.94 16 LS Contribution 393.25 15.07 5.93 5.93 Total: -1.00 -30.29 393.25 -8.77 -39.06 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.66 Total: 8.00 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.51 Total: 0.10 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.04 Total: -45.02 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.17 Total: -21.68 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -4.66 Total: 13.60 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.29 -8.77 -39.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787248884.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.521 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds