Wall clock time and date at job start Wed Apr 1 2020 03:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47058 * 2 1 4 4 C 1.52995 * 109.47216 * 119.99817 * 2 1 3 5 5 N 1.46503 * 109.46900 * 65.00048 * 4 2 1 6 6 C 1.46500 * 120.00037 * 269.99979 * 5 4 2 7 7 C 1.50703 * 109.47089 * 270.00183 * 6 5 4 8 8 H 1.07995 * 120.00095 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99913 * 180.02562 * 7 6 5 10 10 N 1.31521 * 120.00143 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00015 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47252 * 59.99830 * 11 9 7 13 13 H 1.48505 * 109.47129 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.46957 * 299.99762 * 11 9 7 15 15 C 1.34772 * 119.99990 * 90.00539 * 5 4 2 16 16 O 1.21287 * 120.00039 * 180.02562 * 15 5 4 17 17 C 1.50706 * 120.00180 * 359.97438 * 15 5 4 18 18 N 1.46498 * 109.47027 * 180.02562 * 17 15 5 19 19 C 1.46042 * 119.40986 * 90.00444 * 18 17 15 20 20 C 1.52695 * 111.04589 * 142.27840 * 19 18 17 21 21 C 1.50554 * 109.92403 * 51.16162 * 20 19 18 22 22 C 1.37767 * 120.95293 * 146.00296 * 21 20 19 23 23 C 1.38431 * 119.93308 * 179.97438 * 22 21 20 24 24 C 1.38385 * 120.44519 * 359.97438 * 23 22 21 25 25 C 1.38088 * 120.18023 * 0.02562 * 24 23 22 26 26 C 1.39236 * 119.56756 * 0.02562 * 25 24 23 27 27 C 1.34824 * 119.41437 * 270.01954 * 18 17 15 28 28 O 1.21560 * 120.44713 * 2.71687 * 27 18 17 29 29 H 1.08999 * 109.46478 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46979 * 300.00130 * 1 2 3 31 31 H 1.08999 * 109.46477 * 60.00442 * 1 2 3 32 32 H 1.08996 * 109.46979 * 239.99870 * 2 1 3 33 33 H 1.09001 * 109.47080 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47047 * 300.00130 * 3 2 1 35 35 H 1.08996 * 109.46897 * 59.99773 * 3 2 1 36 36 H 1.09004 * 109.47562 * 305.00257 * 4 2 1 37 37 H 1.08997 * 109.47499 * 184.99891 * 4 2 1 38 38 H 1.08993 * 109.47461 * 30.00286 * 6 5 4 39 39 H 1.09001 * 109.47389 * 150.00350 * 6 5 4 40 40 H 0.97001 * 119.99603 * 180.02562 * 10 9 7 41 41 H 1.08997 * 109.46484 * 60.00520 * 17 15 5 42 42 H 1.08996 * 109.46772 * 300.00689 * 17 15 5 43 43 H 1.08997 * 109.16434 * 21.87121 * 19 18 17 44 44 H 1.08998 * 109.16055 * 262.67719 * 19 18 17 45 45 H 1.09002 * 109.39362 * 291.02188 * 20 19 18 46 46 H 1.09004 * 109.32418 * 171.25325 * 20 19 18 47 47 H 1.08004 * 120.03433 * 359.97438 * 22 21 20 48 48 H 1.07997 * 119.78167 * 179.97438 * 23 22 21 49 49 H 1.08001 * 119.90792 * 179.73189 * 24 23 22 50 50 H 1.08001 * 120.22127 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 0.3746 -2.5659 1.7612 7 6 0.5717 -2.9407 3.2075 8 1 1.5509 -2.8644 3.6565 9 6 -0.4980 -3.3821 3.9572 10 7 -1.6904 -3.4755 3.4102 11 14 -0.2536 -3.8475 5.7497 12 1 0.2507 -2.6708 6.5023 13 1 -1.5490 -4.2864 6.3283 14 1 0.7315 -4.9546 5.8438 15 6 2.4716 -3.0330 0.6116 16 8 2.1505 -4.2016 0.5626 17 6 3.7859 -2.5874 0.0241 18 7 4.4853 -3.7440 -0.5409 19 6 4.2586 -4.1073 -1.9371 20 6 5.5493 -4.5905 -2.5946 21 6 6.1885 -5.6579 -1.7468 22 6 6.8795 -6.7012 -2.3230 23 6 7.4595 -7.6709 -1.5233 24 6 7.3509 -7.6006 -0.1455 25 6 6.6609 -6.5600 0.4443 26 6 6.0751 -5.5830 -0.3563 27 6 5.3266 -4.4543 0.2373 28 8 5.4679 -4.1704 1.4108 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6054 -0.2617 2.1370 37 1 3.1264 -0.6443 1.2952 38 1 -0.3484 -1.7532 1.6918 39 1 0.0043 -3.4298 1.2092 40 1 -2.4430 -3.7857 3.9378 41 1 4.3990 -2.1376 0.8051 42 1 3.6028 -1.8544 -0.7615 43 1 3.8859 -3.2371 -2.4773 44 1 3.5141 -4.9021 -1.9836 45 1 6.2375 -3.7519 -2.7005 46 1 5.3216 -4.9985 -3.5794 47 1 6.9687 -6.7624 -3.3976 48 1 8.0003 -8.4879 -1.9776 49 1 7.8030 -8.3642 0.4700 50 1 6.5754 -6.5046 1.5194 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789911482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:52 Heat of formation + Delta-G solvation = -47.333078 kcal Electronic energy + Delta-G solvation = -30955.712375 eV Core-core repulsion = 26947.550468 eV Total energy + Delta-G solvation = -4008.161907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.81969 -39.21831 -38.08956 -36.46616 -36.02485 -33.54645 -32.88789 -32.23465 -31.32955 -29.41200 -28.58706 -26.92732 -26.79753 -25.34351 -24.21832 -23.59989 -22.32160 -21.70953 -20.25261 -19.18612 -18.27366 -17.65724 -16.80002 -16.57983 -16.40718 -15.84316 -15.53652 -15.06334 -14.84529 -14.52458 -14.47380 -14.31806 -14.02220 -13.75491 -13.59438 -13.49529 -13.28095 -12.91391 -12.63225 -12.59188 -12.31881 -12.15933 -12.07498 -11.93708 -11.64672 -11.52178 -11.32379 -11.29833 -11.14820 -10.95450 -10.88019 -10.67345 -10.46464 -10.25032 -10.06730 -9.78138 -9.55150 -9.33989 -9.10633 -8.92370 -8.36458 -8.31529 -7.59015 -5.98588 -4.02067 0.77288 1.18498 2.78362 2.96924 3.37212 3.40736 3.41464 3.48492 3.77522 4.03873 4.35787 4.45163 4.50813 4.53766 4.79390 4.86781 4.95039 5.02528 5.12322 5.16373 5.17848 5.18338 5.27813 5.35563 5.39370 5.41855 5.45200 5.55484 5.67930 5.72828 5.79889 5.82060 5.86748 5.87587 6.10166 6.15008 6.17727 6.19767 6.24516 6.27950 6.29533 6.38374 6.55690 6.69131 6.73776 7.13278 7.39848 7.48081 7.61063 7.98613 8.24706 8.31069 8.46544 8.96779 9.14246 9.62694 11.09275 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010136 B = 0.003525 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.768045 B = 7940.902742 C = 9877.764744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.113 3.887 5 N -0.593 5.593 6 C 0.245 3.755 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.897 5.897 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.491 3.509 16 O -0.532 6.532 17 C 0.095 3.905 18 N -0.590 5.590 19 C 0.117 3.883 20 C -0.098 4.098 21 C -0.052 4.052 22 C -0.127 4.127 23 C -0.097 4.097 24 C -0.132 4.132 25 C -0.056 4.056 26 C -0.124 4.124 27 C 0.566 3.434 28 O -0.525 6.525 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.039 0.961 40 H 0.263 0.737 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.128 0.872 48 H 0.125 0.875 49 H 0.128 0.872 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.289 2.127 -16.122 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.202 4.202 4 C -0.012 4.012 5 N -0.325 5.325 6 C 0.126 3.874 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.276 3.724 16 O -0.408 6.408 17 C -0.032 4.032 18 N -0.322 5.322 19 C -0.006 4.006 20 C -0.135 4.135 21 C -0.053 4.053 22 C -0.145 4.145 23 C -0.115 4.115 24 C -0.150 4.150 25 C -0.074 4.074 26 C -0.127 4.127 27 C 0.355 3.645 28 O -0.402 6.402 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.126 0.874 42 H 0.118 0.882 43 H 0.105 0.895 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.115 0.885 47 H 0.146 0.854 48 H 0.143 0.857 49 H 0.146 0.854 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 15.959 1.605 -15.475 22.288 hybrid contribution -0.059 -0.286 1.054 1.094 sum 15.900 1.319 -14.421 21.506 Atomic orbital electron populations 1.21928 0.94537 1.03111 1.01003 1.21589 0.97214 0.95805 0.98664 1.21787 1.00552 0.95982 1.01852 1.21577 0.98997 0.82470 0.98128 1.48200 1.21796 1.06207 1.56337 1.19369 0.78575 0.96245 0.93204 1.21449 0.95062 1.44211 0.95621 0.92551 1.24903 0.95050 0.95416 0.98630 1.69923 0.99784 1.47253 1.36648 0.86593 0.77267 0.79072 0.84733 1.20234 1.21222 1.20200 1.20694 0.85662 0.86565 0.79520 1.90671 1.74610 1.17316 1.58217 1.21527 0.93474 0.87925 1.00245 1.47134 1.43512 1.30222 1.11345 1.21358 0.96867 1.01723 0.80683 1.20850 0.96779 0.97256 0.98631 1.20012 0.96604 0.95888 0.92799 1.20888 0.99157 0.94506 0.99964 1.21320 0.98100 0.98233 0.93823 1.21169 1.00247 0.98592 0.95040 1.21234 0.93463 0.92108 1.00639 1.19792 1.02041 0.97484 0.93415 1.18157 0.79029 0.81947 0.85387 1.90795 1.65706 1.68391 1.15295 0.91247 0.92448 0.93642 0.91783 0.92888 0.92834 0.92405 0.89757 0.91772 0.94138 0.94253 0.92787 0.87445 0.88167 0.89475 0.90887 0.89485 0.88528 0.85423 0.85666 0.85361 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.18 37.16 0.30 -1.89 16 2 C -0.11 -1.48 3.12 -90.62 -0.28 -1.76 16 3 C -0.14 -1.47 9.19 37.16 0.34 -1.13 16 4 C 0.11 1.82 4.70 -4.04 -0.02 1.80 16 5 N -0.59 -12.59 2.28 -175.06 -0.40 -12.99 16 6 C 0.25 6.42 4.23 -5.19 -0.02 6.40 16 7 C -0.52 -15.37 9.39 -34.44 -0.32 -15.70 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 11 Si 0.90 22.77 29.54 -169.99 -5.02 17.75 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 15 C 0.49 10.51 7.74 -10.98 -0.09 10.42 16 16 O -0.53 -13.93 16.01 5.55 0.09 -13.84 16 17 C 0.09 1.50 4.41 -5.19 -0.02 1.48 16 18 N -0.59 -9.20 2.29 -176.70 -0.40 -9.61 16 19 C 0.12 1.33 6.44 -4.45 -0.03 1.30 16 20 C -0.10 -0.84 6.04 -28.11 -0.17 -1.01 16 21 C -0.05 -0.59 5.68 -104.32 -0.59 -1.18 16 22 C -0.13 -1.16 9.73 -39.68 -0.39 -1.55 16 23 C -0.10 -0.87 10.04 -39.46 -0.40 -1.26 16 24 C -0.13 -1.38 10.04 -39.58 -0.40 -1.78 16 25 C -0.06 -0.76 9.65 -39.27 -0.38 -1.14 16 26 C -0.12 -1.83 5.78 -105.03 -0.61 -2.44 16 27 C 0.57 10.10 7.48 -12.29 -0.09 10.01 16 28 O -0.53 -11.33 16.22 5.31 0.09 -11.25 16 29 H 0.07 1.23 5.89 -51.93 -0.31 0.93 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.79 7.30 -51.93 -0.38 0.41 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 37 H 0.06 0.89 6.44 -51.93 -0.33 0.56 16 38 H 0.04 1.05 5.98 -51.93 -0.31 0.74 16 39 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.11 1.72 6.70 -51.93 -0.35 1.38 16 42 H 0.10 1.17 6.91 -51.93 -0.36 0.81 16 43 H 0.09 0.75 7.74 -51.93 -0.40 0.35 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 47 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 48 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 49 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 50 H 0.14 1.93 7.85 -52.49 -0.41 1.52 16 LS Contribution 403.89 15.07 6.09 6.09 Total: -1.00 -37.75 403.89 -9.93 -47.68 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.85 Total: 0.21 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -3.25 Total: 2.29 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.07 Total: -48.93 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: 0.18 Total: -25.09 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.75 -9.93 -47.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789911482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.344 kcal (2) G-P(sol) polarization free energy of solvation -37.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds