Wall clock time and date at job start Wed Apr 1 2020 03:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47058 * 2 1 4 4 C 1.52995 * 109.47216 * 119.99817 * 2 1 3 5 5 N 1.46503 * 109.46900 * 65.00048 * 4 2 1 6 6 C 1.46500 * 120.00037 * 269.99979 * 5 4 2 7 7 C 1.50703 * 109.47089 * 270.00183 * 6 5 4 8 8 H 1.07995 * 120.00095 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99913 * 180.02562 * 7 6 5 10 10 N 1.31521 * 120.00143 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00015 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47252 * 59.99830 * 11 9 7 13 13 H 1.48505 * 109.47129 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.46957 * 299.99762 * 11 9 7 15 15 C 1.34772 * 119.99990 * 90.00539 * 5 4 2 16 16 O 1.21287 * 120.00039 * 180.02562 * 15 5 4 17 17 C 1.50706 * 120.00180 * 359.97438 * 15 5 4 18 18 N 1.46498 * 109.47027 * 180.02562 * 17 15 5 19 19 C 1.46042 * 119.40986 * 90.00444 * 18 17 15 20 20 C 1.52695 * 111.04589 * 142.27840 * 19 18 17 21 21 C 1.50554 * 109.92403 * 51.16162 * 20 19 18 22 22 C 1.37767 * 120.95293 * 146.00296 * 21 20 19 23 23 C 1.38431 * 119.93308 * 179.97438 * 22 21 20 24 24 C 1.38385 * 120.44519 * 359.97438 * 23 22 21 25 25 C 1.38088 * 120.18023 * 0.02562 * 24 23 22 26 26 C 1.39236 * 119.56756 * 0.02562 * 25 24 23 27 27 C 1.34824 * 119.41437 * 270.01954 * 18 17 15 28 28 O 1.21560 * 120.44713 * 2.71687 * 27 18 17 29 29 H 1.08999 * 109.46478 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46979 * 300.00130 * 1 2 3 31 31 H 1.08999 * 109.46477 * 60.00442 * 1 2 3 32 32 H 1.08996 * 109.46979 * 239.99870 * 2 1 3 33 33 H 1.09001 * 109.47080 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47047 * 300.00130 * 3 2 1 35 35 H 1.08996 * 109.46897 * 59.99773 * 3 2 1 36 36 H 1.09004 * 109.47562 * 305.00257 * 4 2 1 37 37 H 1.08997 * 109.47499 * 184.99891 * 4 2 1 38 38 H 1.08993 * 109.47461 * 30.00286 * 6 5 4 39 39 H 1.09001 * 109.47389 * 150.00350 * 6 5 4 40 40 H 0.97001 * 119.99603 * 180.02562 * 10 9 7 41 41 H 1.08997 * 109.46484 * 60.00520 * 17 15 5 42 42 H 1.08996 * 109.46772 * 300.00689 * 17 15 5 43 43 H 1.08997 * 109.16434 * 21.87121 * 19 18 17 44 44 H 1.08998 * 109.16055 * 262.67719 * 19 18 17 45 45 H 1.09002 * 109.39362 * 291.02188 * 20 19 18 46 46 H 1.09004 * 109.32418 * 171.25325 * 20 19 18 47 47 H 1.08004 * 120.03433 * 359.97438 * 22 21 20 48 48 H 1.07997 * 119.78167 * 179.97438 * 23 22 21 49 49 H 1.08001 * 119.90792 * 179.73189 * 24 23 22 50 50 H 1.08001 * 120.22127 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 0.3746 -2.5659 1.7612 7 6 0.5717 -2.9407 3.2075 8 1 1.5509 -2.8644 3.6565 9 6 -0.4980 -3.3821 3.9572 10 7 -1.6904 -3.4755 3.4102 11 14 -0.2536 -3.8475 5.7497 12 1 0.2507 -2.6708 6.5023 13 1 -1.5490 -4.2864 6.3283 14 1 0.7315 -4.9546 5.8438 15 6 2.4716 -3.0330 0.6116 16 8 2.1505 -4.2016 0.5626 17 6 3.7859 -2.5874 0.0241 18 7 4.4853 -3.7440 -0.5409 19 6 4.2586 -4.1073 -1.9371 20 6 5.5493 -4.5905 -2.5946 21 6 6.1885 -5.6579 -1.7468 22 6 6.8795 -6.7012 -2.3230 23 6 7.4595 -7.6709 -1.5233 24 6 7.3509 -7.6006 -0.1455 25 6 6.6609 -6.5600 0.4443 26 6 6.0751 -5.5830 -0.3563 27 6 5.3266 -4.4543 0.2373 28 8 5.4679 -4.1704 1.4108 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6054 -0.2617 2.1370 37 1 3.1264 -0.6443 1.2952 38 1 -0.3484 -1.7532 1.6918 39 1 0.0043 -3.4298 1.2092 40 1 -2.4430 -3.7857 3.9378 41 1 4.3990 -2.1376 0.8051 42 1 3.6028 -1.8544 -0.7615 43 1 3.8859 -3.2371 -2.4773 44 1 3.5141 -4.9021 -1.9836 45 1 6.2375 -3.7519 -2.7005 46 1 5.3216 -4.9985 -3.5794 47 1 6.9687 -6.7624 -3.3976 48 1 8.0003 -8.4879 -1.9776 49 1 7.8030 -8.3642 0.4700 50 1 6.5754 -6.5046 1.5194 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789911482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:51 Heat of formation + Delta-G solvation = -71.347024 kcal Electronic energy + Delta-G solvation = -30956.753698 eV Core-core repulsion = 26947.550468 eV Total energy + Delta-G solvation = -4009.203230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.96371 -40.69402 -39.24289 -37.86940 -37.26177 -35.40629 -34.17578 -33.85477 -32.24756 -30.62706 -29.98649 -28.41671 -27.94362 -26.86939 -25.14486 -25.05251 -23.86594 -22.60413 -21.46519 -20.43330 -19.60046 -18.78327 -18.64724 -18.15616 -17.90008 -17.10364 -16.79614 -16.45883 -16.15362 -15.95880 -15.75231 -15.44877 -15.36574 -14.84066 -14.81020 -14.63732 -14.51245 -14.25615 -13.98911 -13.66147 -13.58523 -13.43909 -13.37688 -13.08415 -13.01543 -12.90413 -12.73321 -12.69885 -12.58102 -12.21897 -12.19132 -12.09982 -11.95135 -11.85020 -11.53626 -11.53314 -11.06772 -10.93987 -10.66432 -10.05063 -9.83795 -9.57997 -9.40961 -8.26509 -6.40326 -0.15715 0.37067 1.28626 1.33338 1.40526 1.56214 1.76864 1.89731 2.30340 2.47612 2.84791 3.02031 3.41987 3.61639 3.65681 3.75772 3.91675 3.97918 4.03643 4.12163 4.16639 4.25436 4.27410 4.31291 4.41685 4.47230 4.61808 4.62484 4.67955 4.70380 4.85307 4.92217 4.94228 4.98726 5.02475 5.07451 5.11668 5.14845 5.20267 5.30288 5.30648 5.38264 5.43246 5.46526 5.47773 5.52345 5.57548 5.84976 5.96031 6.06019 6.22289 6.65672 6.75338 6.98999 7.24307 7.44757 8.79537 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010136 B = 0.003525 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.768045 B = 7940.902742 C = 9877.764744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C -0.137 4.137 4 C 0.106 3.894 5 N -0.596 5.596 6 C 0.266 3.734 7 C -0.548 4.548 8 H 0.041 0.959 9 C 0.013 3.987 10 N -0.923 5.923 11 Si 0.959 3.041 12 H -0.260 1.260 13 H -0.270 1.270 14 H -0.286 1.286 15 C 0.480 3.520 16 O -0.593 6.593 17 C 0.106 3.894 18 N -0.590 5.590 19 C 0.106 3.894 20 C -0.089 4.089 21 C -0.055 4.055 22 C -0.120 4.120 23 C -0.086 4.086 24 C -0.136 4.136 25 C -0.086 4.086 26 C -0.163 4.163 27 C 0.552 3.448 28 O -0.585 6.585 29 H 0.028 0.972 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.040 0.960 39 H -0.010 1.010 40 H 0.268 0.732 41 H 0.106 0.894 42 H 0.154 0.846 43 H 0.123 0.877 44 H 0.048 0.952 45 H 0.108 0.892 46 H 0.136 0.864 47 H 0.170 0.830 48 H 0.165 0.835 49 H 0.149 0.851 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.608 3.083 -19.354 27.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.194 4.194 4 C -0.017 4.017 5 N -0.327 5.327 6 C 0.145 3.855 7 C -0.587 4.587 8 H 0.059 0.941 9 C -0.187 4.187 10 N -0.563 5.563 11 Si 0.783 3.217 12 H -0.184 1.184 13 H -0.195 1.195 14 H -0.213 1.213 15 C 0.267 3.733 16 O -0.474 6.474 17 C -0.020 4.020 18 N -0.320 5.320 19 C -0.015 4.015 20 C -0.126 4.126 21 C -0.056 4.056 22 C -0.137 4.137 23 C -0.103 4.103 24 C -0.154 4.154 25 C -0.105 4.105 26 C -0.166 4.166 27 C 0.343 3.657 28 O -0.466 6.466 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.058 0.942 39 H 0.008 0.992 40 H 0.077 0.923 41 H 0.124 0.876 42 H 0.172 0.828 43 H 0.141 0.859 44 H 0.066 0.934 45 H 0.126 0.874 46 H 0.154 0.846 47 H 0.188 0.812 48 H 0.182 0.818 49 H 0.166 0.834 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 18.283 2.619 -18.756 26.323 hybrid contribution -0.804 -0.652 2.010 2.261 sum 17.479 1.967 -16.746 24.286 Atomic orbital electron populations 1.21897 0.96183 1.00652 1.01773 1.21530 0.95696 0.97767 0.97266 1.21739 1.01841 0.93266 1.02577 1.21925 1.00767 0.79486 0.99480 1.48203 1.20181 1.08659 1.55632 1.18779 0.81135 0.94303 0.91318 1.21720 0.94549 1.45075 0.97323 0.94101 1.25747 0.94740 0.95061 1.03108 1.70022 1.00457 1.47489 1.38316 0.85608 0.77552 0.78840 0.79656 1.18429 1.19496 1.21251 1.21801 0.87117 0.85681 0.78681 1.90631 1.76228 1.19946 1.60618 1.21557 0.89706 0.89038 1.01720 1.47388 1.42129 1.29647 1.12861 1.21723 0.98354 1.02658 0.78801 1.20950 0.95189 0.97227 0.99204 1.20391 0.96576 0.97319 0.91310 1.21395 0.97312 0.92976 1.02054 1.21832 0.96789 0.98850 0.92874 1.21434 0.99593 0.97842 0.96551 1.21253 0.95594 0.94030 0.99647 1.19815 1.03971 0.97343 0.95502 1.18899 0.79291 0.82555 0.84986 1.90733 1.67983 1.70131 1.17778 0.95239 0.93536 0.91014 0.90124 0.90797 0.91008 0.92844 0.91372 0.88877 0.94181 0.99154 0.92328 0.87569 0.82831 0.85862 0.93383 0.87406 0.84584 0.81211 0.81796 0.83362 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 8.18 71.98 0.59 -3.75 16 2 C -0.10 -2.51 3.12 -10.79 -0.03 -2.54 16 3 C -0.14 -2.32 9.19 71.98 0.66 -1.65 16 4 C 0.11 3.40 4.70 86.38 0.41 3.81 16 5 N -0.60 -26.51 2.28 -826.15 -1.88 -28.40 16 6 C 0.27 14.94 4.23 85.63 0.36 15.30 16 7 C -0.55 -33.97 9.39 25.60 0.24 -33.73 16 8 H 0.04 2.59 7.81 -2.91 -0.02 2.57 16 9 C 0.01 0.78 5.46 84.65 0.46 1.24 16 10 N -0.92 -57.83 13.29 21.45 0.28 -57.55 16 11 Si 0.96 48.13 29.54 68.60 2.03 50.16 16 12 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.29 -14.77 7.11 99.48 0.71 -14.07 16 15 C 0.48 21.52 7.74 87.66 0.68 22.19 16 16 O -0.59 -33.44 16.01 -3.05 -0.05 -33.49 16 17 C 0.11 3.32 4.41 85.64 0.38 3.70 16 18 N -0.59 -18.50 2.29 -831.21 -1.90 -20.41 16 19 C 0.11 2.23 6.44 86.36 0.56 2.78 16 20 C -0.09 -1.20 6.04 29.70 0.18 -1.03 16 21 C -0.06 -1.13 5.68 -19.67 -0.11 -1.24 16 22 C -0.12 -1.69 9.73 22.20 0.22 -1.47 16 23 C -0.09 -1.23 10.04 22.35 0.22 -1.01 16 24 C -0.14 -2.75 10.04 22.27 0.22 -2.52 16 25 C -0.09 -2.53 9.65 22.47 0.22 -2.31 16 26 C -0.16 -4.99 5.78 -20.13 -0.12 -5.10 16 27 C 0.55 20.87 7.48 86.79 0.65 21.52 16 28 O -0.58 -27.50 16.22 -3.91 -0.06 -27.56 16 29 H 0.03 1.08 5.89 -2.39 -0.01 1.07 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.73 7.30 -2.39 -0.02 1.71 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 2.41 8.07 -2.38 -0.02 2.39 16 37 H 0.09 2.46 6.44 -2.39 -0.02 2.44 16 38 H 0.04 2.23 5.98 -2.39 -0.01 2.21 16 39 H -0.01 -0.63 7.42 -2.39 -0.02 -0.65 16 40 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.11 3.41 6.70 -2.39 -0.02 3.39 16 42 H 0.15 3.07 6.91 -2.39 -0.02 3.05 16 43 H 0.12 1.65 7.74 -2.39 -0.02 1.63 16 44 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.14 0.83 8.08 -2.39 -0.02 0.81 16 47 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16 48 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 49 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 50 H 0.11 3.56 7.85 -2.91 -0.02 3.54 16 Total: -1.00 -94.19 403.89 5.12 -89.07 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.93 Total: 13.99 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 5.78 Total: 14.19 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -3.50 Total: -106.35 kcal Atomic # 8 Polarization: -60.93 SS G_CDS: -0.11 Total: -61.05 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -94.19 5.12 -89.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789911482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.718 kcal (2) G-P(sol) polarization free energy of solvation -94.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds