Wall clock time and date at job start Wed Apr 1 2020 05:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47157 * 2 1 4 4 C 1.52990 * 109.47038 * 239.99883 * 2 1 3 5 5 O 1.45200 * 109.46982 * 119.99552 * 2 1 3 6 6 C 1.34637 * 116.99790 * 60.00236 * 5 2 1 7 7 O 1.21511 * 120.00100 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00054 * 179.97438 * 6 5 2 9 9 C 1.46504 * 120.00279 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.46424 * 325.00187 * 9 8 6 11 11 C 1.52994 * 109.47370 * 205.00279 * 9 8 6 12 12 C 1.53004 * 109.47132 * 65.37794 * 11 9 8 13 13 C 1.50704 * 109.47260 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99473 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00106 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00156 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99737 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46813 * 60.00597 * 17 15 13 19 19 H 1.48504 * 109.46500 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47527 * 300.00246 * 17 15 13 21 21 C 1.50698 * 109.47025 * 84.99955 * 9 8 6 22 22 O 1.21279 * 120.00190 * 27.15691 * 21 9 8 23 23 N 1.34781 * 119.99726 * 207.15860 * 21 9 8 24 24 C 1.47421 * 125.65092 * 355.05065 * 23 21 9 25 25 C 1.54910 * 104.83386 * 204.09654 * 24 23 21 26 26 C 1.55162 * 101.57803 * 322.98985 * 25 24 23 27 27 H 1.08994 * 110.72332 * 277.13976 * 26 25 24 28 28 F 1.39898 * 110.71594 * 153.86720 * 26 25 24 29 29 C 1.47020 * 125.64394 * 175.01274 * 23 21 9 30 30 H 1.09006 * 109.46751 * 299.99957 * 1 2 3 31 31 H 1.08999 * 109.47112 * 59.99622 * 1 2 3 32 32 H 1.08996 * 109.47115 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47132 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47418 * 300.00190 * 3 2 1 35 35 H 1.09006 * 109.47270 * 59.99795 * 3 2 1 36 36 H 1.08998 * 109.47632 * 299.99960 * 4 2 1 37 37 H 1.09003 * 109.47238 * 60.00336 * 4 2 1 38 38 H 1.09002 * 109.47271 * 180.02562 * 4 2 1 39 39 H 0.97001 * 120.00062 * 0.02562 * 8 6 5 40 40 H 1.08996 * 109.47569 * 185.37595 * 11 9 8 41 41 H 1.08996 * 109.47216 * 305.38018 * 11 9 8 42 42 H 1.08998 * 109.47174 * 300.00031 * 12 11 9 43 43 H 1.08995 * 109.47378 * 60.00219 * 12 11 9 44 44 H 0.96996 * 120.00175 * 179.97438 * 16 15 13 45 45 H 1.09000 * 110.36809 * 322.93426 * 24 23 21 46 46 H 1.09008 * 110.36475 * 85.25829 * 24 23 21 47 47 H 1.09001 * 110.99981 * 204.91876 * 25 24 23 48 48 H 1.08994 * 111.00571 * 81.06509 * 25 24 23 49 49 H 1.09002 * 109.88633 * 59.55945 * 29 23 21 50 50 H 1.08995 * 109.88822 * 298.39038 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9517 -2.5097 0.5036 8 7 2.0680 -2.6656 2.4168 9 6 1.6748 -4.0671 2.5828 10 1 0.6657 -4.2095 2.1961 11 6 1.7084 -4.4338 4.0678 12 6 0.6416 -3.6313 4.8155 13 6 0.6750 -3.9920 6.2783 14 1 1.3858 -4.7210 6.6386 15 6 -0.2018 -3.3914 7.1567 16 7 -1.0676 -2.5041 6.7179 17 14 -0.1607 -3.8391 8.9698 18 1 1.1788 -3.5228 9.5275 19 1 -1.1961 -3.0601 9.6954 20 1 -0.4326 -5.2904 9.1277 21 6 2.6324 -4.9505 1.8255 22 8 3.7719 -4.5835 1.6314 23 7 2.2224 -6.1486 1.3638 24 6 0.9052 -6.7611 1.6146 25 6 1.1361 -8.2831 1.4415 26 6 2.1502 -8.3126 0.2675 27 1 1.6346 -8.2344 -0.6896 28 9 2.9312 -9.4723 0.3172 29 6 3.0146 -7.0606 0.5258 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 2.6275 -2.2367 3.0830 40 1 1.5092 -5.4991 4.1836 41 1 2.6913 -4.2012 4.4773 42 1 0.8407 -2.5660 4.6997 43 1 -0.3414 -3.8638 4.4060 44 1 -1.6846 -2.0818 7.3358 45 1 0.5714 -6.5411 2.6287 46 1 0.1757 -6.4030 0.8881 47 1 0.2101 -8.7904 1.1707 48 1 1.5688 -8.7176 2.3425 49 1 3.9293 -7.3428 1.0472 50 1 3.2588 -6.5772 -0.4200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819554183.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:25 Heat of formation + Delta-G solvation = -177.426243 kcal Electronic energy + Delta-G solvation = -31949.887299 eV Core-core repulsion = 27505.314905 eV Total energy + Delta-G solvation = -4444.572394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -47.90478 -40.74313 -39.90342 -37.67780 -36.78497 -35.29519 -34.02326 -33.10617 -31.60958 -30.91861 -29.27561 -27.40455 -27.36226 -27.32307 -24.48121 -23.40111 -22.29073 -21.51544 -20.63944 -19.86554 -19.35908 -18.06209 -17.42540 -17.32592 -16.54797 -16.26134 -15.85736 -15.71031 -15.27199 -15.04809 -14.89615 -14.64799 -14.46920 -14.26487 -14.13802 -13.89001 -13.40834 -13.17240 -12.92736 -12.85322 -12.48873 -12.35668 -12.30677 -12.16169 -11.95762 -11.90429 -11.85004 -11.76492 -11.43528 -11.23536 -11.14279 -11.04680 -10.93421 -10.87448 -10.71792 -10.29328 -10.15551 -10.09489 -9.83365 -9.61383 -9.24755 -8.78504 -8.70049 -8.43052 -6.08304 -4.12233 2.25323 2.75144 2.81572 3.19371 3.28575 3.33864 3.35863 3.92296 4.11898 4.33392 4.38108 4.39028 4.56135 4.74840 4.75522 4.80564 4.93751 5.00602 5.08965 5.25616 5.28489 5.37919 5.45536 5.48185 5.52653 5.54269 5.54556 5.66145 5.67732 5.68707 5.78998 5.88288 5.89900 5.98104 6.04438 6.11744 6.31227 6.36863 6.40366 6.55367 6.73465 6.76317 7.39827 7.53373 7.61659 7.69257 7.88620 8.20333 8.27969 8.63075 8.93749 9.52820 11.02401 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.005531 B = 0.004836 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5061.549062 B = 5788.526230 C =10089.169866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.361 6.361 6 C 0.658 3.342 7 O -0.576 6.576 8 N -0.678 5.678 9 C 0.155 3.845 10 H 0.110 0.890 11 C -0.114 4.114 12 C 0.027 3.973 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.526 3.474 22 O -0.534 6.534 23 N -0.618 5.618 24 C 0.093 3.907 25 C -0.156 4.156 26 C 0.079 3.921 27 H 0.104 0.896 28 F -0.202 7.202 29 C 0.085 3.915 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.414 0.586 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.023 0.977 43 H 0.019 0.981 44 H 0.262 0.738 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.080 0.920 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 -2.976 -15.875 16.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.239 4.239 5 O -0.276 6.276 6 C 0.411 3.589 7 O -0.466 6.466 8 N -0.336 5.336 9 C 0.047 3.953 10 H 0.128 0.872 11 C -0.152 4.152 12 C -0.011 4.011 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.314 3.686 22 O -0.409 6.409 23 N -0.354 5.354 24 C -0.029 4.029 25 C -0.194 4.194 26 C 0.042 3.958 27 H 0.122 0.878 28 F -0.183 7.183 29 C -0.039 4.039 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.250 0.750 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.114 0.886 46 H 0.097 0.903 47 H 0.116 0.884 48 H 0.111 0.889 49 H 0.099 0.901 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.417 -2.765 -16.344 16.925 hybrid contribution 0.207 -0.106 1.214 1.236 sum 3.623 -2.870 -15.130 15.820 Atomic orbital electron populations 1.22518 0.93940 1.05240 1.02381 1.22016 0.94449 0.91426 0.82170 1.21852 1.02148 0.92734 1.03030 1.22500 1.01458 1.03506 0.96429 1.86312 1.71379 1.23713 1.46192 1.17984 0.78473 0.80401 0.81996 1.90845 1.41727 1.70658 1.43414 1.44302 1.55054 1.10730 1.23489 1.21042 0.97341 0.78296 0.98585 0.87205 1.22021 1.03195 1.01853 0.88167 1.19101 0.92349 0.95262 0.94341 1.21122 1.18501 1.24113 0.92721 0.92604 1.24987 0.95335 0.94949 0.98838 1.69945 1.20589 1.27293 1.35160 0.86662 0.77780 0.78511 0.85078 1.20200 1.21279 1.20212 1.21222 0.88942 0.80087 0.78325 1.90672 1.19800 1.72606 1.57828 1.48317 1.16299 1.18501 1.52290 1.22471 0.85369 0.91397 1.03701 1.23415 1.00280 0.96682 0.99054 1.22569 0.90826 0.81308 1.01048 0.87830 1.92837 1.76836 1.50725 1.97875 1.22380 0.95472 0.89736 0.96306 0.91888 0.91466 0.89255 0.91580 0.90363 0.91314 0.89435 0.91420 0.92331 0.74980 0.90799 0.91462 0.95856 0.96230 0.92824 0.88575 0.90254 0.88402 0.88911 0.90119 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.37 37.16 0.31 -2.09 16 2 C 0.14 1.81 1.13 -90.62 -0.10 1.71 16 3 C -0.14 -1.44 8.85 37.16 0.33 -1.11 16 4 C -0.18 -2.29 8.37 37.15 0.31 -1.98 16 5 O -0.36 -5.94 9.94 -40.32 -0.40 -6.34 16 6 C 0.66 11.83 8.01 54.06 0.43 12.26 16 7 O -0.58 -10.80 11.54 -19.28 -0.22 -11.02 16 8 N -0.68 -12.00 4.19 -59.87 -0.25 -12.25 16 9 C 0.16 2.67 1.68 -69.08 -0.12 2.55 16 10 H 0.11 1.89 6.94 -51.93 -0.36 1.53 16 11 C -0.11 -2.11 4.58 -26.73 -0.12 -2.24 16 12 C 0.03 0.62 4.86 -27.88 -0.14 0.49 16 13 C -0.53 -13.87 9.11 -34.44 -0.31 -14.18 16 14 H 0.06 1.43 7.74 -52.48 -0.41 1.02 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 17 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.53 8.96 7.00 -10.98 -0.08 8.89 16 22 O -0.53 -10.64 16.98 5.56 0.09 -10.54 16 23 N -0.62 -8.46 3.33 -170.52 -0.57 -9.03 16 24 C 0.09 0.99 6.26 -2.53 -0.02 0.98 16 25 C -0.16 -1.32 6.89 -24.58 -0.17 -1.49 16 26 C 0.08 0.72 4.76 -24.89 -0.12 0.60 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 28 F -0.20 -2.20 17.19 2.25 0.04 -2.16 16 29 C 0.08 1.00 6.69 -3.06 -0.02 0.98 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.38 5.88 -51.93 -0.31 1.08 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.32 5.88 -51.93 -0.31 1.01 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.41 7.03 8.71 -40.82 -0.36 6.68 16 40 H 0.07 1.27 7.05 -51.93 -0.37 0.91 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.02 0.58 7.76 -51.93 -0.40 0.18 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.10 1.07 6.61 -51.93 -0.34 0.73 16 46 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 50 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 406.30 15.07 6.12 6.12 Total: -1.00 -32.70 406.30 -7.69 -40.40 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -8.32 Total: 6.98 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 0.10 Total: 6.93 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.08 Total: -46.12 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.53 Total: -27.91 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.70 -7.69 -40.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819554183.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.031 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds