Wall clock time and date at job start Wed Apr 1 2020 05:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47545 * 2 1 4 4 C 1.52998 * 109.47310 * 239.99808 * 2 1 3 5 5 O 1.45202 * 109.47273 * 120.00145 * 2 1 3 6 6 C 1.34633 * 117.00078 * 59.99440 * 5 2 1 7 7 O 1.21519 * 120.00111 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00558 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00658 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.46951 * 325.00495 * 9 8 6 11 11 C 1.52997 * 109.47520 * 205.00266 * 9 8 6 12 12 C 1.53006 * 109.47127 * 64.99751 * 11 9 8 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99944 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48510 * 109.46866 * 90.00390 * 17 15 13 19 19 H 1.48502 * 109.47245 * 210.00175 * 17 15 13 20 20 H 1.48494 * 109.47271 * 330.00312 * 17 15 13 21 21 C 1.50701 * 109.46823 * 84.99929 * 9 8 6 22 22 O 1.21275 * 119.99965 * 0.02562 * 21 9 8 23 23 N 1.34776 * 119.99869 * 180.02562 * 21 9 8 24 24 C 1.47021 * 125.64940 * 180.02562 * 23 21 9 25 25 C 1.54326 * 107.27232 * 181.02440 * 24 23 21 26 26 C 1.55159 * 102.94057 * 22.19017 * 25 24 23 27 27 H 1.09006 * 111.00282 * 82.57487 * 26 25 24 28 28 F 1.39902 * 111.00423 * 206.42468 * 26 25 24 29 29 C 1.47425 * 125.64486 * 359.69541 * 23 21 9 30 30 H 1.09003 * 109.47077 * 299.99983 * 1 2 3 31 31 H 1.08996 * 109.47108 * 59.99980 * 1 2 3 32 32 H 1.08999 * 109.47483 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47271 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46934 * 300.00126 * 3 2 1 35 35 H 1.09003 * 109.46919 * 59.99920 * 3 2 1 36 36 H 1.08999 * 109.47174 * 300.00588 * 4 2 1 37 37 H 1.08996 * 109.46862 * 60.00061 * 4 2 1 38 38 H 1.09005 * 109.47475 * 180.02562 * 4 2 1 39 39 H 0.97006 * 119.99420 * 0.02562 * 8 6 5 40 40 H 1.09001 * 109.46832 * 305.00072 * 11 9 8 41 41 H 1.08993 * 109.47194 * 184.99593 * 11 9 8 42 42 H 1.09001 * 109.46801 * 300.00272 * 12 11 9 43 43 H 1.09001 * 109.46998 * 59.99868 * 12 11 9 44 44 H 0.96997 * 119.99752 * 179.97438 * 16 15 13 45 45 H 1.09002 * 109.88046 * 300.43591 * 24 23 21 46 46 H 1.08995 * 109.88390 * 61.60614 * 24 23 21 47 47 H 1.08993 * 110.72156 * 140.55213 * 25 24 23 48 48 H 1.09003 * 110.71731 * 263.65325 * 25 24 23 49 49 H 1.09004 * 110.36758 * 274.73867 * 29 23 21 50 50 H 1.08993 * 110.37068 * 37.07118 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9514 -2.5097 0.5036 8 7 2.0671 -2.6655 2.4171 9 6 1.6739 -4.0669 2.5832 10 1 0.6651 -4.2096 2.1957 11 6 1.7063 -4.4333 4.0683 12 6 0.6453 -3.6238 4.8166 13 6 0.6768 -3.9851 6.2793 14 1 1.3833 -4.7185 6.6392 15 6 -0.1954 -3.3788 7.1581 16 7 -1.0554 -2.4854 6.7199 17 14 -0.1559 -3.8262 8.9713 18 1 0.7916 -2.9299 9.6817 19 1 -1.5145 -3.6687 9.5498 20 1 0.2868 -5.2354 9.1239 21 6 2.6321 -4.9505 1.8267 22 8 3.5530 -4.4580 1.2101 23 7 2.4656 -6.2879 1.8354 24 6 3.3224 -7.2625 1.1444 25 6 2.7343 -8.6633 1.4161 26 6 1.2565 -8.3559 1.7756 27 1 0.6532 -8.2323 0.8762 28 9 0.7238 -9.3517 2.6013 29 6 1.3981 -7.0161 2.5450 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2075 -2.1391 38 1 3.1300 -0.7217 -1.2490 39 1 2.6262 -2.2364 3.0837 40 1 2.6912 -4.2069 4.4769 41 1 1.5005 -5.4973 4.1846 42 1 0.8512 -2.5598 4.7002 43 1 -0.3395 -3.8501 4.4079 44 1 -1.6693 -2.0591 7.3381 45 1 3.3225 -7.0620 0.0730 46 1 4.3385 -7.2051 1.5346 47 1 2.7925 -9.2858 0.5233 48 1 3.2460 -9.1409 2.2517 49 1 1.6870 -7.1990 3.5801 50 1 0.4644 -6.4553 2.5042 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819554185.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:41 Heat of formation + Delta-G solvation = -173.291355 kcal Electronic energy + Delta-G solvation = -32049.790536 eV Core-core repulsion = 27605.397443 eV Total energy + Delta-G solvation = -4444.393092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -47.80135 -40.71375 -39.91837 -37.64598 -36.72042 -35.33101 -33.98253 -33.07807 -31.85719 -30.74013 -29.00716 -27.49843 -27.35899 -27.27924 -24.56645 -23.31149 -22.28266 -21.45284 -20.65155 -19.82232 -19.43278 -18.01327 -17.38548 -17.22006 -16.45903 -16.29429 -15.94976 -15.59109 -15.33254 -14.90492 -14.75960 -14.68639 -14.46199 -14.22167 -14.11113 -13.78947 -13.39128 -13.20505 -13.11609 -12.82173 -12.45037 -12.43685 -12.29856 -12.11868 -11.92292 -11.82240 -11.80127 -11.71229 -11.38551 -11.18869 -11.14924 -10.95120 -10.92087 -10.83639 -10.69301 -10.24419 -10.13024 -10.04707 -9.77344 -9.58258 -9.22697 -8.76304 -8.71454 -8.42656 -6.07844 -4.11822 2.32945 2.72879 2.84376 3.26337 3.27714 3.34882 3.37092 3.96677 4.13520 4.27389 4.38310 4.42631 4.57175 4.79242 4.79834 4.84710 4.95033 4.98123 5.22149 5.24234 5.28748 5.36337 5.43854 5.49217 5.51385 5.57407 5.58222 5.67526 5.70866 5.72484 5.82313 5.86992 5.94491 6.01739 6.05552 6.14093 6.36801 6.38062 6.40422 6.60065 6.75877 6.77827 7.38839 7.54145 7.62151 7.74245 7.89059 8.20354 8.28220 8.70204 8.94419 9.53368 11.02909 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.005993 B = 0.004730 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4671.244604 B = 5918.834378 C = 9820.105724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.181 4.181 5 O -0.362 6.362 6 C 0.662 3.338 7 O -0.575 6.575 8 N -0.678 5.678 9 C 0.153 3.847 10 H 0.115 0.885 11 C -0.123 4.123 12 C 0.026 3.974 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.525 3.475 22 O -0.531 6.531 23 N -0.618 5.618 24 C 0.110 3.890 25 C -0.156 4.156 26 C 0.078 3.922 27 H 0.104 0.896 28 F -0.198 7.198 29 C 0.072 3.928 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.412 0.588 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.023 0.977 43 H 0.019 0.981 44 H 0.261 0.739 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.916 -4.005 -14.244 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.277 6.277 6 C 0.416 3.584 7 O -0.465 6.465 8 N -0.335 5.335 9 C 0.045 3.955 10 H 0.133 0.867 11 C -0.161 4.161 12 C -0.011 4.011 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.313 3.687 22 O -0.407 6.407 23 N -0.355 5.355 24 C -0.013 4.013 25 C -0.194 4.194 26 C 0.041 3.959 27 H 0.122 0.878 28 F -0.179 7.179 29 C -0.051 4.051 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.248 0.752 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.041 0.959 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.111 0.889 48 H 0.109 0.891 49 H 0.112 0.888 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.926 -3.711 -14.968 16.520 hybrid contribution 0.141 -0.093 1.337 1.348 sum 6.068 -3.804 -13.631 15.398 Atomic orbital electron populations 1.22517 0.94007 1.05237 1.02332 1.22003 0.94392 0.91387 0.82249 1.21848 1.02123 0.92781 1.02981 1.22495 1.01479 1.03557 0.96323 1.86296 1.71444 1.23793 1.46168 1.17913 0.78364 0.80271 0.81894 1.90842 1.41756 1.70607 1.43319 1.44213 1.55267 1.10668 1.23387 1.21012 0.97563 0.78467 0.98451 0.86741 1.22189 1.03016 1.02444 0.88443 1.19102 0.92473 0.95187 0.94364 1.21148 1.18825 1.23692 0.92701 0.92569 1.24994 0.95336 0.94973 0.98844 1.69961 1.20977 1.26996 1.35021 0.86607 0.77315 0.78881 0.85282 1.20666 1.21216 1.19818 1.21198 0.86224 0.80605 0.80652 1.90674 1.33114 1.73210 1.43659 1.48263 1.30147 1.05266 1.51799 1.21850 0.95073 0.86410 0.97927 1.23262 0.94956 0.97126 1.04078 1.22734 0.94827 0.85537 0.92839 0.87811 1.92845 1.87792 1.62686 1.74534 1.23097 0.92615 0.92185 0.97230 0.91919 0.91496 0.89263 0.91600 0.90395 0.91359 0.89352 0.91520 0.92314 0.75186 0.91763 0.90220 0.95900 0.96228 0.92883 0.91021 0.90854 0.88941 0.89060 0.88827 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 8.37 37.15 0.31 -2.18 16 2 C 0.14 1.89 1.13 -90.62 -0.10 1.78 16 3 C -0.14 -1.48 8.85 37.16 0.33 -1.15 16 4 C -0.18 -2.40 8.37 37.16 0.31 -2.09 16 5 O -0.36 -6.12 9.94 -40.30 -0.40 -6.52 16 6 C 0.66 12.25 7.89 54.06 0.43 12.68 16 7 O -0.58 -11.29 11.54 -19.29 -0.22 -11.51 16 8 N -0.68 -12.08 4.06 -59.87 -0.24 -12.33 16 9 C 0.15 2.63 1.73 -69.08 -0.12 2.51 16 10 H 0.12 2.03 7.29 -51.93 -0.38 1.65 16 11 C -0.12 -2.22 4.55 -26.73 -0.12 -2.34 16 12 C 0.03 0.60 4.86 -27.88 -0.14 0.47 16 13 C -0.53 -13.77 9.11 -34.44 -0.31 -14.09 16 14 H 0.06 1.42 7.74 -52.48 -0.41 1.02 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 17 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.53 8.80 7.25 -10.99 -0.08 8.72 16 22 O -0.53 -10.42 16.65 5.56 0.09 -10.33 16 23 N -0.62 -8.27 3.32 -170.37 -0.57 -8.83 16 24 C 0.11 1.17 6.87 -3.06 -0.02 1.15 16 25 C -0.16 -1.26 6.76 -24.89 -0.17 -1.43 16 26 C 0.08 0.74 4.88 -24.45 -0.12 0.62 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 F -0.20 -2.27 17.23 2.25 0.04 -2.23 16 29 C 0.07 0.84 4.95 -2.40 -0.01 0.83 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.43 5.88 -51.93 -0.31 1.13 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.41 5.88 -51.93 -0.31 1.10 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.41 6.94 8.71 -40.82 -0.36 6.59 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.32 4.87 -51.93 -0.25 1.07 16 42 H 0.02 0.57 7.75 -51.93 -0.40 0.17 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.09 1.11 7.00 -51.93 -0.36 0.75 16 50 H 0.10 1.14 7.39 -51.93 -0.38 0.76 16 LS Contribution 402.72 15.07 6.07 6.07 Total: -1.00 -32.84 402.72 -7.64 -40.48 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.21 Total: 7.34 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 0.09 Total: 7.03 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.07 Total: -46.11 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.53 Total: -28.36 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.84 -7.64 -40.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819554185.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.813 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds