Wall clock time and date at job start Wed Apr 1 2020 03:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47392 * 2 1 4 4 C 1.50701 * 109.47310 * 240.00148 * 2 1 3 5 5 H 1.07995 * 120.00241 * 240.00802 * 4 2 1 6 6 C 1.37883 * 119.99971 * 59.99744 * 4 2 1 7 7 N 1.31518 * 119.99804 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99927 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47245 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46784 * 120.00558 * 8 6 4 11 11 H 1.48494 * 109.47320 * 240.00278 * 8 6 4 12 12 C 1.52999 * 109.47125 * 120.00117 * 2 1 3 13 13 N 1.46497 * 109.47048 * 299.99864 * 12 2 1 14 14 C 1.34774 * 119.99850 * 179.97438 * 13 12 2 15 15 O 1.21284 * 120.00395 * 0.02562 * 14 13 12 16 16 C 1.50705 * 120.00181 * 180.02562 * 14 13 12 17 17 H 1.09003 * 110.43436 * 298.91563 * 16 14 13 18 18 C 1.54623 * 110.48908 * 176.22832 * 16 14 13 19 19 C 1.54479 * 101.76448 * 216.52279 * 18 16 14 20 20 N 1.46762 * 105.53509 * 25.20998 * 19 18 16 21 21 C 1.46497 * 124.34850 * 163.21275 * 20 19 18 22 22 C 1.50698 * 109.47411 * 270.19573 * 21 20 19 23 23 C 1.38233 * 119.99968 * 269.73420 * 22 21 20 24 24 C 1.38235 * 119.99980 * 179.74445 * 23 22 21 25 25 C 1.38238 * 120.00010 * 0.52011 * 24 23 22 26 26 C 1.38240 * 119.99760 * 359.75154 * 25 24 23 27 27 C 1.38232 * 119.99806 * 359.97261 * 26 25 24 28 28 C 1.34417 * 111.30037 * 343.36548 * 20 19 18 29 29 O 1.21283 * 124.94355 * 180.27867 * 28 20 19 30 30 H 1.08996 * 109.47256 * 300.00245 * 1 2 3 31 31 H 1.09002 * 109.46913 * 59.99373 * 1 2 3 32 32 H 1.08998 * 109.47314 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47139 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47141 * 299.99980 * 3 2 1 35 35 H 1.09006 * 109.46718 * 60.00020 * 3 2 1 36 36 H 0.96998 * 119.99939 * 179.97438 * 7 6 4 37 37 H 1.09003 * 109.47284 * 179.97438 * 12 2 1 38 38 H 1.08998 * 109.46701 * 60.00020 * 12 2 1 39 39 H 0.96999 * 120.00149 * 0.02562 * 13 12 2 40 40 H 1.09006 * 110.96977 * 334.64350 * 18 16 14 41 41 H 1.09002 * 110.97110 * 98.40216 * 18 16 14 42 42 H 1.09004 * 110.24168 * 144.41384 * 19 18 16 43 43 H 1.08995 * 110.24508 * 266.32593 * 19 18 16 44 44 H 1.09002 * 109.46945 * 30.19431 * 21 20 19 45 45 H 1.08999 * 109.46945 * 150.19685 * 21 20 19 46 46 H 1.08002 * 119.99901 * 359.97438 * 23 22 21 47 47 H 1.08001 * 120.00316 * 180.29479 * 24 23 22 48 48 H 1.07996 * 120.00019 * 179.76961 * 25 24 23 49 49 H 1.07998 * 119.99379 * 180.02562 * 26 25 24 50 50 H 1.08004 * 119.99386 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1455 -2.2876 -3.6038 10 1 1.1660 -1.5865 -4.8161 11 1 3.1466 -0.1873 -4.8165 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8768 -0.4915 3.6694 15 8 2.5741 -1.4776 3.7808 16 6 1.3741 0.2186 4.9000 17 1 1.7444 1.2434 4.9260 18 6 1.7968 -0.5452 6.1762 19 6 0.5647 -0.3442 7.0862 20 7 -0.5636 -0.1170 6.1756 21 6 -1.9725 -0.2261 6.5619 22 6 -2.4451 -1.6404 6.3441 23 6 -2.9947 -2.0062 5.1296 24 6 -3.4234 -3.3049 4.9280 25 6 -3.3122 -4.2351 5.9446 26 6 -2.7676 -3.8678 7.1610 27 6 -2.3338 -2.5706 7.3605 28 6 -0.1381 0.2009 4.9408 29 8 -0.8613 0.4434 3.9978 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8901 36 1 0.7094 1.1619 -3.4844 37 1 3.1300 -0.7217 1.2490 38 1 1.6766 -1.7489 1.2491 39 1 0.9937 0.7578 2.3564 40 1 1.9563 -1.6023 5.9634 41 1 2.6868 -0.0997 6.6207 42 1 0.3922 -1.2354 7.6896 43 1 0.7083 0.5241 7.7291 44 1 -2.0819 0.0355 7.6143 45 1 -2.5695 0.4540 5.9543 46 1 -3.0859 -1.2782 4.3370 47 1 -3.8485 -3.5919 3.9776 48 1 -3.6505 -5.2487 5.7883 49 1 -2.6804 -4.5947 7.9549 50 1 -1.9080 -2.2839 8.3108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822399716.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:36 Heat of formation + Delta-G solvation = -49.071016 kcal Electronic energy + Delta-G solvation = -30769.045453 eV Core-core repulsion = 26760.808183 eV Total energy + Delta-G solvation = -4008.237269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.00946 -39.38365 -38.58303 -36.64613 -36.16067 -33.80727 -33.19454 -31.07553 -31.04809 -30.56466 -28.17270 -26.46922 -25.61751 -25.49192 -24.79248 -22.83874 -22.16744 -21.90894 -20.41074 -19.40469 -18.68777 -17.45775 -17.23525 -16.69614 -16.37725 -15.72498 -15.54102 -15.25819 -14.99475 -14.79535 -14.48519 -14.44432 -13.88875 -13.63572 -13.57256 -13.43988 -13.06404 -12.91639 -12.78806 -12.62271 -12.47721 -12.20175 -12.11910 -11.87313 -11.45503 -11.29485 -11.23230 -11.13329 -11.10670 -10.81575 -10.61160 -10.29787 -10.14865 -9.95354 -9.56962 -9.53858 -9.19930 -9.06860 -9.06258 -8.85547 -8.69388 -8.39155 -8.24065 -5.95728 -4.05842 1.08178 1.25629 2.37374 2.75469 3.10297 3.30720 3.38982 3.43556 3.67585 3.75602 4.13383 4.31989 4.45047 4.53251 4.60669 4.79464 4.80370 4.84511 4.91604 5.03272 5.16298 5.20642 5.28243 5.30643 5.39863 5.41695 5.47917 5.67204 5.80164 5.88784 5.96597 6.26388 6.27639 6.30846 6.37327 6.39354 6.41906 6.60822 6.83443 6.83862 6.88122 6.96986 7.03661 7.11620 7.14957 7.45449 7.65737 7.76037 8.01744 8.09826 8.12458 8.22940 8.45509 8.70543 8.95043 9.59482 11.05582 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013135 B = 0.002880 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.121509 B = 9721.092144 C =10732.851095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.057 3.943 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.132 3.868 13 N -0.700 5.700 14 C 0.520 3.480 15 O -0.549 6.549 16 C -0.151 4.151 17 H 0.132 0.868 18 C -0.114 4.114 19 C 0.102 3.898 20 N -0.614 5.614 21 C 0.168 3.832 22 C -0.113 4.113 23 C -0.093 4.093 24 C -0.120 4.120 25 C -0.116 4.116 26 C -0.126 4.126 27 C -0.107 4.107 28 C 0.528 3.472 29 O -0.506 6.506 30 H 0.013 0.987 31 H 0.083 0.917 32 H 0.024 0.976 33 H 0.026 0.974 34 H 0.086 0.914 35 H 0.006 0.994 36 H 0.259 0.741 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.405 0.595 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.127 0.873 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.121 0.879 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 -1.567 23.996 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.009 3.991 13 N -0.350 5.350 14 C 0.304 3.696 15 O -0.428 6.428 16 C -0.175 4.175 17 H 0.150 0.850 18 C -0.152 4.152 19 C -0.021 4.021 20 N -0.349 5.349 21 C 0.047 3.953 22 C -0.114 4.114 23 C -0.112 4.112 24 C -0.138 4.138 25 C -0.134 4.134 26 C -0.144 4.144 27 C -0.125 4.125 28 C 0.314 3.686 29 O -0.380 6.380 30 H 0.032 0.968 31 H 0.102 0.898 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.104 0.896 35 H 0.025 0.975 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.241 0.759 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.106 0.894 45 H 0.111 0.889 46 H 0.145 0.855 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.139 0.861 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.464 -2.000 23.396 24.355 hybrid contribution 0.067 -0.159 -0.864 0.881 sum -6.396 -2.159 22.532 23.522 Atomic orbital electron populations 1.21801 0.97487 0.99122 1.00373 1.18349 0.93006 0.92665 0.90385 1.21830 0.98411 0.98448 1.00157 1.21036 1.31329 1.12028 0.89946 0.92449 1.24886 0.94909 0.94953 0.98813 1.69832 1.36737 1.22776 1.23010 0.86527 0.78607 0.79742 0.83070 1.19787 1.21096 1.21098 1.21745 0.97953 0.95851 0.83530 1.46290 1.51289 1.31834 1.05588 1.19645 0.81067 0.84609 0.84318 1.90664 1.39213 1.26386 1.86564 1.22198 0.95004 1.03545 0.96781 0.85044 1.22554 0.97242 1.03289 0.92134 1.22161 0.85295 1.01809 0.92818 1.48219 1.05917 1.69669 1.11058 1.20252 0.80394 0.93242 1.01435 1.20215 1.00128 0.96438 0.94660 1.21241 0.96640 0.96717 0.96601 1.21238 0.99936 0.93447 0.99181 1.21206 0.99194 0.99452 0.93546 1.21109 0.99563 0.96230 0.97513 1.20991 0.99696 0.93310 0.98514 1.20399 0.89658 0.76021 0.82489 1.90788 1.61238 1.48393 1.37596 0.96810 0.89800 0.95720 0.95505 0.89573 0.97482 0.93123 0.92657 0.92828 0.75855 0.88176 0.88699 0.90227 0.90783 0.89372 0.88911 0.85458 0.85857 0.86130 0.86137 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.08 37.16 0.30 -2.89 16 2 C 0.06 1.38 0.50 -155.66 -0.08 1.31 16 3 C -0.13 -3.09 8.08 37.16 0.30 -2.79 16 4 C -0.50 -13.69 8.01 -34.44 -0.28 -13.97 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.88 -24.34 9.35 55.43 0.52 -23.83 16 8 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.13 2.96 4.50 -4.04 -0.02 2.95 16 13 N -0.70 -13.65 4.66 -60.29 -0.28 -13.93 16 14 C 0.52 9.33 7.16 -10.98 -0.08 9.26 16 15 O -0.55 -11.38 15.52 5.55 0.09 -11.29 16 16 C -0.15 -1.94 3.33 -91.78 -0.31 -2.25 16 17 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 18 C -0.11 -1.12 6.45 -25.10 -0.16 -1.28 16 19 C 0.10 0.77 7.35 -3.12 -0.02 0.75 16 20 N -0.61 -6.45 2.92 -173.79 -0.51 -6.96 16 21 C 0.17 1.54 6.06 -5.20 -0.03 1.51 16 22 C -0.11 -1.20 5.46 -104.63 -0.57 -1.77 16 23 C -0.09 -1.15 9.70 -39.58 -0.38 -1.54 16 24 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 25 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 26 C -0.13 -1.16 10.05 -39.58 -0.40 -1.55 16 27 C -0.11 -0.97 9.70 -39.59 -0.38 -1.35 16 28 C 0.53 7.40 7.43 -10.86 -0.08 7.32 16 29 O -0.51 -8.85 16.41 5.55 0.09 -8.76 16 30 H 0.01 0.30 6.86 -51.93 -0.36 -0.06 16 31 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 35 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 36 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.40 7.72 5.37 -40.82 -0.22 7.50 16 40 H 0.10 1.22 7.06 -51.93 -0.37 0.85 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 45 H 0.09 0.92 7.86 -51.93 -0.41 0.51 16 46 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 47 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 48 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 49 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 50 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 402.55 15.07 6.07 6.07 Total: -1.00 -32.35 402.55 -9.92 -42.27 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.79 Total: 8.17 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -3.08 Total: -7.95 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.27 Total: -44.71 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.18 Total: -20.06 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.35 -9.92 -42.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822399716.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.801 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds