Wall clock time and date at job start Wed Apr 1 2020 03:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46803 * 2 1 4 4 C 1.52997 * 109.46550 * 240.00284 * 2 1 3 5 5 N 1.46499 * 109.47113 * 119.99869 * 2 1 3 6 6 C 1.46759 * 124.34758 * 179.97438 * 5 2 1 7 7 C 1.54483 * 105.47270 * 196.99867 * 6 5 2 8 8 C 1.54624 * 101.76584 * 334.58691 * 7 6 5 9 9 H 1.09007 * 110.60282 * 266.06389 * 8 7 6 10 10 N 1.46496 * 110.48651 * 143.47491 * 8 7 6 11 11 C 1.34781 * 120.00252 * 158.77413 * 10 8 7 12 12 O 1.21283 * 119.99572 * 359.97438 * 11 10 8 13 13 C 1.50700 * 119.99996 * 180.02562 * 11 10 8 14 14 C 1.50705 * 109.46604 * 179.97438 * 13 11 10 15 15 C 1.37638 * 120.12287 * 265.01415 * 14 13 11 16 16 C 1.38615 * 120.24368 * 179.97438 * 15 14 13 17 17 C 1.38662 * 120.50398 * 0.02562 * 16 15 14 18 18 C 1.37594 * 120.24465 * 0.02562 * 17 16 15 19 19 C 1.40687 * 120.12972 * 85.00058 * 14 13 11 20 20 C 1.41404 * 120.24341 * 359.97438 * 19 14 13 21 21 H 1.07995 * 119.99792 * 334.06274 * 20 19 14 22 22 C 1.39945 * 119.99818 * 154.06225 * 20 19 14 23 23 N 1.30820 * 120.00362 * 343.66963 * 22 20 19 24 24 Si 1.86800 * 119.99690 * 163.66661 * 22 20 19 25 25 H 1.48497 * 109.47509 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47141 * 119.99987 * 24 22 20 27 27 H 1.48505 * 109.47397 * 240.00275 * 24 22 20 28 28 C 1.34421 * 124.34763 * 359.97438 * 5 2 1 29 29 O 1.21280 * 124.94356 * 359.64538 * 28 5 2 30 30 H 1.09001 * 109.47115 * 300.00111 * 1 2 3 31 31 H 1.08997 * 109.47279 * 59.99255 * 1 2 3 32 32 H 1.08991 * 109.47312 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46695 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47418 * 299.99753 * 3 2 1 35 35 H 1.08993 * 109.46991 * 60.00767 * 3 2 1 36 36 H 1.08999 * 109.47532 * 299.99517 * 4 2 1 37 37 H 1.08996 * 109.47694 * 60.00233 * 4 2 1 38 38 H 1.09011 * 109.46663 * 180.02562 * 4 2 1 39 39 H 1.08998 * 110.25390 * 316.00227 * 6 5 2 40 40 H 1.09004 * 110.24221 * 78.00111 * 6 5 2 41 41 H 1.09006 * 110.96953 * 216.47017 * 7 6 5 42 42 H 1.08999 * 110.96709 * 92.70530 * 7 6 5 43 43 H 0.96997 * 119.99994 * 338.77186 * 10 8 7 44 44 H 1.08999 * 109.47281 * 59.99537 * 13 11 10 45 45 H 1.09001 * 109.47068 * 299.99217 * 13 11 10 46 46 H 1.07991 * 119.88155 * 359.97438 * 15 14 13 47 47 H 1.08003 * 119.75145 * 180.02562 * 16 15 14 48 48 H 1.08000 * 119.87584 * 180.27776 * 17 16 15 49 49 H 1.07997 * 120.12421 * 179.97438 * 18 17 16 50 50 H 0.97001 * 119.99960 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1962 6 6 3.4368 -0.8794 1.5222 7 6 3.4693 -1.9971 2.5881 8 6 2.0643 -1.8702 3.2211 9 1 2.0975 -1.2308 4.1034 10 7 1.5366 -3.1923 3.5672 11 6 0.5602 -3.3080 4.4891 12 8 0.1190 -2.3176 5.0326 13 6 0.0178 -4.6681 4.8455 14 6 -1.0558 -4.5219 5.8930 15 6 -0.7433 -4.6603 7.2263 16 6 -1.7287 -4.5258 8.1919 17 6 -3.0382 -4.2514 7.8278 18 6 -3.3735 -4.1100 6.5008 19 6 -2.3811 -4.2431 5.5119 20 6 -2.7136 -4.0980 4.1452 21 1 -1.9612 -3.7842 3.4368 22 6 -4.0176 -4.3610 3.7106 23 7 -4.8382 -5.0352 4.4745 24 14 -4.5864 -3.7493 2.0398 25 1 -3.4767 -3.0193 1.3758 26 1 -4.9895 -4.9060 1.2001 27 1 -5.7450 -2.8369 2.2147 28 6 1.2248 -1.2326 2.1361 29 8 0.0123 -1.2138 2.1167 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2491 39 1 3.9900 -1.1879 0.6352 40 1 3.8563 0.0412 1.9280 41 1 4.2485 -1.8091 3.3269 42 1 3.6014 -2.9747 2.1243 43 1 1.8897 -3.9844 3.1328 44 1 0.8235 -5.2898 5.2357 45 1 -0.4037 -5.1357 3.9556 46 1 0.2732 -4.8745 7.5213 47 1 -1.4746 -4.6356 9.2359 48 1 -3.7970 -4.1442 8.5888 49 1 -4.3941 -3.8967 6.2194 50 1 -5.7422 -5.2171 4.1733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843618949.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:15 Heat of formation + Delta-G solvation = -48.617636 kcal Electronic energy + Delta-G solvation = -31220.966203 eV Core-core repulsion = 27212.748593 eV Total energy + Delta-G solvation = -4008.217609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.92640 -38.93951 -37.28288 -36.59143 -35.99248 -33.49883 -33.36011 -31.59655 -29.70365 -29.32789 -27.82836 -27.57593 -27.14208 -26.01877 -24.77935 -22.48626 -21.43522 -20.81933 -20.44893 -19.24519 -18.57205 -17.10717 -16.93224 -16.69075 -16.05978 -15.62711 -15.24269 -14.92718 -14.59002 -14.37994 -14.25003 -14.03747 -13.74574 -13.52801 -13.31088 -13.12635 -12.91866 -12.83998 -12.52106 -12.46921 -12.23398 -12.19275 -11.98074 -11.78449 -11.60216 -11.44557 -11.39646 -11.18111 -11.14213 -11.05129 -10.92568 -10.85152 -10.54902 -10.25669 -9.72390 -9.37518 -9.25118 -9.08882 -9.03252 -8.70387 -8.47641 -7.20925 -7.17582 -6.61962 -4.20624 2.61700 2.85335 2.89660 3.09503 3.18042 3.30108 3.37671 3.45563 3.70055 4.08725 4.25077 4.33980 4.63612 4.64843 4.77547 4.78959 4.81913 4.87109 5.15811 5.29194 5.32925 5.39264 5.49146 5.50998 5.58734 5.62777 5.69958 5.78497 5.80941 5.82502 5.90436 6.11604 6.13725 6.23858 6.35074 6.37002 6.52287 6.60276 6.64970 6.74284 6.90025 7.16281 7.22440 7.40599 7.53345 7.75713 7.92919 8.04166 8.21043 8.24365 8.37999 8.43758 8.78691 8.95658 9.05332 9.13685 10.32192 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011504 B = 0.003836 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.370535 B = 7297.378872 C = 9090.683229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.175 3.825 3 C -0.156 4.156 4 C -0.156 4.156 5 N -0.619 5.619 6 C 0.106 3.894 7 C -0.136 4.136 8 C 0.118 3.882 9 H 0.118 0.882 10 N -0.730 5.730 11 C 0.518 3.482 12 O -0.506 6.506 13 C -0.068 4.068 14 C -0.182 4.182 15 C -0.081 4.081 16 C -0.242 4.242 17 C -0.107 4.107 18 C -0.159 4.159 19 C 0.130 3.870 20 C -0.450 4.450 21 H 0.078 0.922 22 C 0.078 3.922 23 N -0.797 5.797 24 Si 0.898 3.102 25 H -0.256 1.256 26 H -0.277 1.277 27 H -0.273 1.273 28 C 0.500 3.500 29 O -0.487 6.487 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.398 0.602 44 H 0.075 0.925 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.116 0.884 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.210 6.138 -11.074 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.091 3.909 3 C -0.214 4.214 4 C -0.214 4.214 5 N -0.357 5.357 6 C -0.017 4.017 7 C -0.175 4.175 8 C 0.009 3.991 9 H 0.136 0.864 10 N -0.386 5.386 11 C 0.306 3.694 12 O -0.378 6.378 13 C -0.108 4.108 14 C -0.184 4.184 15 C -0.099 4.099 16 C -0.262 4.262 17 C -0.126 4.126 18 C -0.179 4.179 19 C 0.128 3.872 20 C -0.479 4.479 21 H 0.096 0.904 22 C -0.139 4.139 23 N -0.423 5.423 24 Si 0.722 3.278 25 H -0.180 1.180 26 H -0.202 1.202 27 H -0.198 1.198 28 C 0.284 3.716 29 O -0.359 6.359 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.232 0.768 44 H 0.093 0.907 45 H 0.114 0.886 46 H 0.102 0.898 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.134 0.866 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.895 6.816 -10.715 21.135 hybrid contribution -0.072 -0.036 -1.031 1.034 sum 16.823 6.780 -11.746 21.609 Atomic orbital electron populations 1.22115 0.91989 1.03938 1.02045 1.20420 0.95455 0.91295 0.83682 1.22186 1.01129 0.95453 1.02664 1.22178 1.01109 1.01203 0.96937 1.48419 1.06892 1.57650 1.22703 1.21944 0.82836 0.98463 0.98479 1.22889 0.96454 0.99810 0.98321 1.21449 0.91962 0.88019 0.97698 0.86427 1.45963 1.41589 1.06625 1.44413 1.21276 0.77566 0.92891 0.77701 1.90692 1.56188 1.39462 1.51470 1.20243 0.97390 0.92506 1.00628 1.19028 0.94216 1.13290 0.91825 1.20277 0.96421 1.00347 0.92889 1.20278 0.93978 1.15349 0.96576 1.20660 0.95033 1.01016 0.95876 1.21294 1.00077 1.05253 0.91253 1.17344 0.89930 0.86733 0.93240 1.19576 0.95085 1.39399 0.93864 0.90425 1.25858 0.96451 0.92569 0.99031 1.69836 1.06816 1.28361 1.37299 0.86409 0.79702 0.79365 0.82299 1.17988 1.20218 1.19794 1.21408 0.88159 0.78658 0.83367 1.90837 1.12408 1.56611 1.76001 0.91057 0.92608 0.91108 0.92411 0.91443 0.92081 0.92088 0.91403 0.92411 0.90384 0.91112 0.88548 0.89418 0.76776 0.90653 0.88643 0.89834 0.89769 0.89686 0.86598 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.00 37.16 0.26 -1.69 16 2 C 0.17 1.86 1.20 -131.82 -0.16 1.70 16 3 C -0.16 -1.33 8.54 37.16 0.32 -1.01 16 4 C -0.16 -1.31 8.49 37.16 0.32 -1.00 16 5 N -0.62 -7.11 2.76 -157.57 -0.43 -7.54 16 6 C 0.11 0.78 6.60 -3.12 -0.02 0.76 16 7 C -0.14 -1.02 6.86 -25.10 -0.17 -1.19 16 8 C 0.12 1.57 3.23 -67.94 -0.22 1.36 16 9 H 0.12 1.73 7.66 -51.92 -0.40 1.34 16 10 N -0.73 -10.86 5.15 -53.82 -0.28 -11.14 16 11 C 0.52 10.53 7.41 -10.98 -0.08 10.45 16 12 O -0.51 -12.76 15.74 5.55 0.09 -12.67 16 13 C -0.07 -1.38 5.18 -29.03 -0.15 -1.53 16 14 C -0.18 -4.55 4.43 -103.91 -0.46 -5.01 16 15 C -0.08 -1.93 9.66 -39.66 -0.38 -2.32 16 16 C -0.24 -5.86 10.05 -39.29 -0.39 -6.25 16 17 C -0.11 -2.73 10.02 -39.66 -0.40 -3.13 16 18 C -0.16 -4.47 8.68 -38.87 -0.34 -4.81 16 19 C 0.13 3.65 5.56 -106.83 -0.59 3.06 16 20 C -0.45 -12.65 8.14 -37.74 -0.31 -12.96 16 21 H 0.08 2.21 6.68 -52.49 -0.35 1.86 16 22 C 0.08 2.08 5.16 -17.34 -0.09 2.00 16 23 N -0.80 -21.61 10.96 55.55 0.61 -21.00 16 24 Si 0.90 20.56 29.59 -169.99 -5.03 15.53 16 25 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 C 0.50 7.94 7.47 -10.86 -0.08 7.86 16 29 O -0.49 -10.43 13.95 5.56 0.08 -10.35 16 30 H 0.07 1.15 7.06 -51.93 -0.37 0.78 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.16 7.08 -51.93 -0.37 0.79 16 33 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.39 7.21 -51.92 -0.37 0.01 16 39 H 0.08 0.43 7.12 -51.93 -0.37 0.06 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.54 7.80 -51.93 -0.41 0.14 16 43 H 0.40 4.50 8.38 -40.82 -0.34 4.16 16 44 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 45 H 0.10 1.95 7.06 -51.93 -0.37 1.58 16 46 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 47 H 0.08 1.80 8.06 -52.48 -0.42 1.38 16 48 H 0.08 1.94 8.06 -52.49 -0.42 1.52 16 49 H 0.12 3.34 6.21 -52.49 -0.33 3.02 16 50 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 LS Contribution 400.86 15.07 6.04 6.04 Total: -1.00 -36.17 400.86 -9.74 -45.91 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -7.86 Total: 8.94 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.95 Total: -13.71 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: -0.10 Total: -39.68 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.16 Total: -23.02 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.17 -9.74 -45.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843618949.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.711 kcal (2) G-P(sol) polarization free energy of solvation -36.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds