Wall clock time and date at job start Wed Apr 1 2020 03:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 116.99825 * 2 1 4 4 O 1.20822 * 120.00204 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00067 * 179.97438 * 3 2 1 6 6 C 1.53005 * 109.47117 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.46977 * 179.97438 * 6 5 3 8 8 C 1.37089 * 120.00073 * 269.99941 * 7 6 5 9 9 H 1.08003 * 120.00191 * 144.32458 * 8 7 6 10 10 C 1.38955 * 119.99785 * 324.32271 * 8 7 6 11 11 N 1.31400 * 120.00107 * 338.49903 * 10 8 7 12 12 Si 1.86809 * 119.99806 * 158.50048 * 10 8 7 13 13 H 1.48492 * 109.47113 * 59.99716 * 12 10 8 14 14 H 1.48495 * 109.46798 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46743 * 299.99893 * 12 10 8 16 16 C 1.34781 * 119.99949 * 89.99624 * 7 6 5 17 17 O 1.21289 * 119.99761 * 4.65192 * 16 7 6 18 18 C 1.50697 * 119.99988 * 184.65008 * 16 7 6 19 19 F 1.39895 * 110.87434 * 57.97940 * 18 16 7 20 20 C 1.55144 * 110.99009 * 294.13433 * 18 16 7 21 21 C 1.54316 * 103.01696 * 206.25437 * 20 18 16 22 22 N 1.47436 * 107.23496 * 22.28590 * 21 20 18 23 23 C 1.46904 * 110.99995 * 123.25673 * 22 21 20 24 24 C 1.53003 * 109.47190 * 62.52011 * 23 22 21 25 25 C 1.53002 * 109.46707 * 182.52089 * 23 22 21 26 26 C 1.52997 * 109.47139 * 302.51931 * 23 22 21 27 27 C 1.47841 * 108.56834 * 0.98583 * 22 21 20 28 28 H 1.09000 * 109.47559 * 60.00305 * 1 2 3 29 29 H 1.09005 * 109.47236 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47249 * 299.99825 * 1 2 3 31 31 H 1.08996 * 109.47012 * 59.99640 * 5 3 2 32 32 H 1.09003 * 109.46685 * 300.00023 * 5 3 2 33 33 H 1.08993 * 109.46903 * 59.99618 * 6 5 3 34 34 H 1.09000 * 109.46526 * 299.99742 * 6 5 3 35 35 H 0.96999 * 120.00292 * 185.03501 * 11 10 8 36 36 H 1.09002 * 110.70378 * 87.87148 * 20 18 16 37 37 H 1.09003 * 110.85496 * 324.71227 * 20 18 16 38 38 H 1.09000 * 109.88774 * 262.87440 * 21 20 18 39 39 H 1.09000 * 109.88688 * 141.69368 * 21 20 18 40 40 H 1.09005 * 109.46743 * 60.00002 * 24 23 22 41 41 H 1.09000 * 109.46803 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.46644 * 299.99838 * 24 23 22 43 43 H 1.08991 * 109.47693 * 59.99982 * 25 23 22 44 44 H 1.09008 * 109.46614 * 180.02562 * 25 23 22 45 45 H 1.09001 * 109.47145 * 299.99458 * 25 23 22 46 46 H 1.09000 * 109.47177 * 62.30378 * 26 23 22 47 47 H 1.08997 * 109.47300 * 182.30791 * 26 23 22 48 48 H 1.09007 * 109.47116 * 302.30463 * 26 23 22 49 49 H 1.09000 * 110.37301 * 94.73254 * 27 22 21 50 50 H 1.09001 * 110.37672 * 217.07359 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7422 0.0011 7 7 5.4630 2.8189 0.0023 8 6 6.1466 2.8547 1.1901 9 1 7.1018 2.3585 1.2786 10 6 5.6104 3.5293 2.2801 11 7 4.7042 4.4625 2.0944 12 14 6.1780 3.1095 4.0097 13 1 7.6392 3.3488 4.1229 14 1 5.4586 3.9644 4.9878 15 1 5.8869 1.6812 4.2931 16 6 6.1369 2.8543 -1.1644 17 8 5.5306 2.9078 -2.2135 18 6 7.6437 2.8273 -1.1654 19 9 8.1221 1.6831 -0.5182 20 6 8.2229 4.1139 -0.5203 21 6 9.6085 4.2436 -1.1872 22 7 9.5562 3.4897 -2.4531 23 6 9.9009 4.3500 -3.5929 24 6 11.3389 4.8492 -3.4386 25 6 9.7749 3.5508 -4.8915 26 6 8.9477 5.5461 -3.6356 27 6 8.1995 2.9232 -2.6081 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9564 0.7806 -0.8891 32 1 3.9556 0.7810 0.8909 33 1 3.6099 3.2361 0.8910 34 1 3.6106 3.2364 -0.8890 35 1 4.3834 4.9837 2.8469 36 1 8.3241 3.9923 0.5582 37 1 7.6008 4.9783 -0.7525 38 1 10.3743 3.8224 -0.5359 39 1 9.8261 5.2924 -1.3889 40 1 12.0180 3.9970 -3.4082 41 1 11.5947 5.4872 -4.2845 42 1 11.4286 5.4185 -2.5134 43 1 8.7505 3.1952 -5.0014 44 1 10.0311 4.1892 -5.7372 45 1 10.4540 2.6988 -4.8611 46 1 9.0668 6.1382 -2.7282 47 1 9.1771 6.1627 -4.5046 48 1 7.9200 5.1893 -3.7043 49 1 7.5782 3.5856 -3.2108 50 1 8.2510 1.9333 -3.0615 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871344415.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:37 Heat of formation + Delta-G solvation = -169.774054 kcal Electronic energy + Delta-G solvation = -32799.172940 eV Core-core repulsion = 28354.932370 eV Total energy + Delta-G solvation = -4444.240571 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -48.68512 -41.61800 -41.00144 -40.02415 -37.71763 -36.98877 -35.57286 -33.90408 -32.63830 -30.55022 -30.27098 -28.70956 -28.22206 -27.76507 -27.00355 -25.63457 -23.28067 -22.71245 -21.71494 -20.96598 -19.87725 -19.30694 -18.69106 -18.05417 -17.67659 -17.62085 -17.31644 -16.78145 -16.42586 -16.18995 -16.00074 -15.72532 -15.37426 -15.10455 -15.02721 -14.88809 -14.56903 -14.36951 -14.13823 -13.84670 -13.73915 -13.59917 -13.42544 -13.22344 -13.01227 -12.92056 -12.86845 -12.81838 -12.74216 -12.61127 -12.47456 -12.30803 -12.13416 -12.08821 -12.00583 -11.83352 -11.79185 -11.67597 -11.59131 -11.45889 -11.08956 -10.39757 -9.61185 -9.27675 -8.35765 -6.11268 1.08135 1.37239 1.47941 1.54669 1.58527 1.80340 2.26565 2.57092 2.93605 3.03903 3.41069 3.43875 3.67059 3.76731 3.93684 3.95684 4.04240 4.10116 4.17886 4.26534 4.28222 4.29367 4.33062 4.35354 4.53361 4.57250 4.66185 4.66454 4.69622 4.82121 4.85657 4.90975 4.92820 4.96247 5.02465 5.03625 5.07903 5.21869 5.21945 5.28503 5.33574 5.37509 5.48337 5.51252 5.83442 5.92768 6.18191 6.34204 6.65183 7.01477 7.36725 7.80213 8.65893 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.003805 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.015966 B = 7357.594681 C = 8934.501211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.475 3.525 4 O -0.535 6.535 5 C -0.115 4.115 6 C 0.126 3.874 7 N -0.426 5.426 8 C -0.360 4.360 9 H 0.106 0.894 10 C 0.013 3.987 11 N -0.884 5.884 12 Si 0.975 3.025 13 H -0.258 1.258 14 H -0.285 1.285 15 H -0.265 1.265 16 C 0.444 3.556 17 O -0.617 6.617 18 C 0.117 3.883 19 F -0.192 7.192 20 C -0.134 4.134 21 C 0.044 3.956 22 N -0.515 5.515 23 C 0.089 3.911 24 C -0.130 4.130 25 C -0.138 4.138 26 C -0.182 4.182 27 C 0.050 3.950 28 H 0.061 0.939 29 H 0.138 0.862 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.040 0.960 35 H 0.275 0.725 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.041 0.959 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.080 0.920 48 H 0.037 0.963 49 H 0.069 0.931 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.423 -2.901 -5.066 8.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.425 6.425 5 C -0.154 4.154 6 C 0.002 3.998 7 N -0.142 5.142 8 C -0.487 4.487 9 H 0.124 0.876 10 C -0.191 4.191 11 N -0.520 5.520 12 Si 0.798 3.202 13 H -0.183 1.183 14 H -0.210 1.210 15 H -0.190 1.190 16 C 0.232 3.768 17 O -0.505 6.505 18 C 0.095 3.905 19 F -0.172 7.172 20 C -0.173 4.173 21 C -0.083 4.083 22 N -0.239 5.239 23 C 0.000 4.000 24 C -0.187 4.187 25 C -0.195 4.195 26 C -0.241 4.241 27 C -0.078 4.078 28 H 0.079 0.921 29 H 0.156 0.844 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.135 0.865 33 H 0.120 0.880 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.099 0.901 48 H 0.056 0.944 49 H 0.087 0.913 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.106 -2.920 -5.409 8.664 hybrid contribution -1.241 0.667 0.970 1.711 sum 4.864 -2.253 -4.438 6.960 Atomic orbital electron populations 1.23596 0.74649 1.05931 1.02500 1.86507 1.25252 1.32255 1.83818 1.23720 0.91927 0.81347 0.71112 1.90641 1.67780 1.37418 1.46664 1.21636 0.87130 1.00540 1.06074 1.21082 0.81906 0.93365 1.03466 1.43597 1.04786 1.60644 1.05165 1.19863 1.06666 1.35009 0.87115 0.87638 1.26156 0.96102 0.93321 1.03552 1.69935 1.30173 1.18202 1.33673 0.85259 0.79205 0.78716 0.77050 1.18275 1.21035 1.19010 1.20973 0.89885 0.81710 0.84235 1.90526 1.70252 1.57149 1.32537 1.21704 0.90111 0.84634 0.94098 1.92794 1.89160 1.52151 1.83124 1.23126 0.96918 0.94712 1.02509 1.22959 0.95708 0.98831 0.90821 1.63963 1.23902 1.33449 1.02574 1.21423 0.96462 0.91124 0.91009 1.21817 0.93174 1.01318 1.02435 1.21874 1.01544 1.00508 0.95615 1.22534 0.99324 0.99201 1.03029 1.23224 0.89762 1.01589 0.93241 0.92064 0.84355 0.92056 0.88037 0.86467 0.87992 0.94094 0.91523 0.88821 0.91722 0.89255 0.90016 0.91746 0.90472 0.92401 0.93982 0.90287 0.91617 0.92332 0.90112 0.94389 0.91264 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 16 2 O -0.36 -11.45 10.57 -51.40 -0.54 -11.99 16 3 C 0.47 18.38 7.96 71.24 0.57 18.95 16 4 O -0.54 -23.75 15.73 21.98 0.35 -23.40 16 5 C -0.12 -4.67 6.14 29.85 0.18 -4.49 16 6 C 0.13 6.18 4.33 86.38 0.37 6.55 16 7 N -0.43 -21.09 2.53 -635.54 -1.61 -22.70 16 8 C -0.36 -17.37 7.18 84.04 0.60 -16.76 16 9 H 0.11 4.99 5.64 -2.91 -0.02 4.98 16 10 C 0.01 0.64 4.97 84.93 0.42 1.06 16 11 N -0.88 -45.74 11.33 21.66 0.25 -45.50 16 12 Si 0.97 37.94 29.61 68.60 2.03 39.97 16 13 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 14 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 15 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 16 C 0.44 21.58 6.84 87.66 0.60 22.18 16 17 O -0.62 -32.37 15.30 -3.06 -0.05 -32.41 16 18 C 0.12 4.78 0.96 -10.15 -0.01 4.77 16 19 F -0.19 -8.10 15.32 44.97 0.69 -7.41 16 20 C -0.13 -4.95 5.34 31.78 0.17 -4.78 16 21 C 0.04 1.28 5.59 86.65 0.48 1.76 16 22 N -0.51 -15.15 5.00 -836.18 -4.18 -19.33 16 23 C 0.09 2.11 0.66 3.53 0.00 2.12 16 24 C -0.13 -2.41 8.39 71.98 0.60 -1.80 16 25 C -0.14 -3.02 8.31 71.98 0.60 -2.43 16 26 C -0.18 -4.51 7.91 71.98 0.57 -3.94 16 27 C 0.05 1.80 4.03 86.77 0.35 2.15 16 28 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 29 H 0.14 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 31 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 32 H 0.12 4.48 8.14 -2.39 -0.02 4.46 16 33 H 0.10 5.44 5.34 -2.39 -0.01 5.43 16 34 H 0.04 2.18 7.32 -2.39 -0.02 2.16 16 35 H 0.27 13.55 8.32 -92.71 -0.77 12.78 16 36 H 0.09 3.62 6.87 -2.39 -0.02 3.60 16 37 H 0.06 2.58 8.04 -2.39 -0.02 2.57 16 38 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.08 2.06 4.77 -2.39 -0.01 2.05 16 40 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.06 1.06 6.66 -2.39 -0.02 1.04 16 43 H 0.04 1.06 6.89 -2.39 -0.02 1.04 16 44 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.06 1.44 6.26 -2.39 -0.01 1.43 16 47 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.04 1.14 6.09 -2.38 -0.01 1.13 16 49 H 0.07 2.65 4.67 -2.39 -0.01 2.63 16 50 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -62.84 390.42 4.60 -58.24 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: 0.95 Total: 37.39 kcal Atomic # 6 Polarization: 20.43 SS G_CDS: 6.71 Total: 27.14 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -5.54 Total: -87.53 kcal Atomic # 8 Polarization: -67.56 SS G_CDS: -0.24 Total: -67.81 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 0.69 Total: -7.41 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -62.84 4.60 -58.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344415.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.532 kcal (2) G-P(sol) polarization free energy of solvation -62.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds