Wall clock time and date at job start Wed Apr 1 2020 03:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 116.99960 * 2 1 4 4 O 1.20826 * 120.00169 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99545 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46631 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46579 * 180.02562 * 6 5 3 8 8 C 1.37104 * 119.99980 * 90.00312 * 7 6 5 9 9 H 1.07994 * 120.00133 * 221.35863 * 8 7 6 10 10 C 1.38951 * 120.00018 * 41.35443 * 8 7 6 11 11 N 1.31407 * 120.00318 * 11.66576 * 10 8 7 12 12 Si 1.86797 * 119.99900 * 191.67007 * 10 8 7 13 13 H 1.48492 * 109.47503 * 59.99748 * 12 10 8 14 14 H 1.48500 * 109.47271 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46950 * 299.99846 * 12 10 8 16 16 C 1.34773 * 120.00129 * 269.99648 * 7 6 5 17 17 O 1.21292 * 119.99807 * 5.04904 * 16 7 6 18 18 C 1.50699 * 120.00285 * 185.04690 * 16 7 6 19 19 F 1.39904 * 110.28901 * 301.67138 * 18 16 7 20 20 C 1.54264 * 110.32158 * 63.79251 * 18 16 7 21 21 C 1.54381 * 105.05727 * 118.89873 * 20 18 16 22 22 N 1.48558 * 104.59584 * 23.85331 * 21 20 18 23 23 C 1.46899 * 110.99896 * 200.95835 * 22 21 20 24 24 C 1.53006 * 109.46808 * 63.38669 * 23 22 21 25 25 C 1.53002 * 109.47142 * 183.38489 * 23 22 21 26 26 C 1.52998 * 109.47180 * 303.38892 * 23 22 21 27 27 C 1.48558 * 104.22153 * 320.51574 * 22 21 20 28 28 H 1.08999 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47323 * 300.00223 * 1 2 3 30 30 H 1.09002 * 109.47030 * 59.99858 * 1 2 3 31 31 H 1.08993 * 109.47395 * 299.99979 * 5 3 2 32 32 H 1.09000 * 109.47053 * 60.00599 * 5 3 2 33 33 H 1.08999 * 109.47478 * 299.99833 * 6 5 3 34 34 H 1.08999 * 109.47574 * 60.00381 * 6 5 3 35 35 H 0.96999 * 120.00295 * 174.98916 * 11 10 8 36 36 H 1.09005 * 110.32373 * 237.79264 * 20 18 16 37 37 H 1.09000 * 110.32550 * 0.02562 * 20 18 16 38 38 H 1.08999 * 110.40835 * 142.63565 * 21 20 18 39 39 H 1.09004 * 110.40760 * 264.95398 * 21 20 18 40 40 H 1.09005 * 109.47064 * 66.27310 * 24 23 22 41 41 H 1.09004 * 109.46645 * 186.26733 * 24 23 22 42 42 H 1.08994 * 109.47207 * 306.26977 * 24 23 22 43 43 H 1.08995 * 109.46910 * 60.00381 * 25 23 22 44 44 H 1.09001 * 109.46858 * 180.02562 * 25 23 22 45 45 H 1.08997 * 109.46709 * 300.00363 * 25 23 22 46 46 H 1.08993 * 109.47484 * 60.00294 * 26 23 22 47 47 H 1.09001 * 109.46762 * 179.97438 * 26 23 22 48 48 H 1.08995 * 109.47181 * 299.99808 * 26 23 22 49 49 H 1.09005 * 110.41362 * 280.70499 * 27 22 21 50 50 H 1.09000 * 110.41038 * 158.25870 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8185 0.0011 8 6 6.1477 2.8548 -1.1863 9 1 7.0568 2.2836 -1.3033 10 6 5.6718 3.6266 -2.2393 11 7 4.7064 4.4941 -2.0342 12 14 6.4044 3.4307 -3.9464 13 1 6.2122 2.0333 -4.4103 14 1 5.7283 4.3618 -4.8851 15 1 7.8558 3.7419 -3.9009 16 6 6.1363 2.8534 1.1682 17 8 5.5390 2.7292 2.2165 18 6 7.6308 3.0465 1.1707 19 9 8.2523 2.0326 0.4338 20 6 7.9933 4.4293 0.5909 21 6 8.7176 5.1675 1.7371 22 7 9.2481 4.0840 2.6039 23 6 9.5220 4.5804 3.9591 24 6 8.2141 5.0366 4.6091 25 6 10.1443 3.4610 4.7962 26 6 10.4926 5.7606 3.8834 27 6 8.1666 3.0656 2.6184 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9557 0.7808 0.8908 32 1 3.9564 0.7805 -0.8892 33 1 3.6108 3.2363 -0.8889 34 1 3.6102 3.2359 0.8911 35 1 4.4238 5.0837 -2.7508 36 1 8.6568 4.3182 -0.2667 37 1 7.0902 4.9685 0.3049 38 1 9.5337 5.7733 1.3433 39 1 8.0157 5.7908 2.2912 40 1 7.5656 4.1743 4.7646 41 1 8.4299 5.5066 5.5686 42 1 7.7152 5.7536 3.9572 43 1 11.0759 3.1361 4.3332 44 1 10.3470 3.8293 5.8019 45 1 9.4527 2.6203 4.8501 46 1 10.0493 6.5580 3.2872 47 1 10.6955 6.1292 4.8890 48 1 11.4243 5.4357 3.4204 49 1 7.3781 3.3583 3.3118 50 1 8.5679 2.0887 2.8881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871344416.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:43 Heat of formation + Delta-G solvation = -153.580883 kcal Electronic energy + Delta-G solvation = -32796.154036 eV Core-core repulsion = 28352.615654 eV Total energy + Delta-G solvation = -4443.538382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.96541 -40.07098 -39.59002 -38.34302 -36.20584 -35.15235 -34.35472 -32.03902 -30.86345 -29.10499 -28.77710 -27.47904 -27.28731 -26.71880 -25.14023 -23.97230 -21.99096 -21.16865 -20.10308 -19.11296 -18.65656 -17.66014 -17.10064 -16.30479 -16.18907 -16.12172 -15.86008 -15.38201 -14.68271 -14.57284 -14.35304 -14.08824 -13.95425 -13.80894 -13.63035 -13.39617 -13.28897 -13.11876 -12.72388 -12.33039 -12.21384 -12.16313 -12.00027 -11.94602 -11.77451 -11.68162 -11.43915 -11.29562 -11.19969 -11.08041 -10.99848 -10.84377 -10.68484 -10.65201 -10.55220 -10.43866 -10.39776 -10.15222 -10.06630 -10.00386 -9.20399 -8.55932 -8.13898 -7.65209 -6.45246 -4.26756 2.65766 3.02525 3.07668 3.17378 3.19506 3.58597 3.95755 4.09511 4.52478 4.79569 4.83519 4.91071 5.01330 5.16441 5.22393 5.23701 5.27115 5.29768 5.34823 5.51339 5.61923 5.63208 5.67419 5.74521 5.76947 5.82154 5.86052 5.88398 5.92011 5.94324 6.03444 6.04683 6.18682 6.22088 6.25677 6.27967 6.35214 6.52142 6.67765 6.70137 6.73821 6.82209 7.11776 7.26138 7.28982 7.48073 7.75414 8.16982 8.29007 8.92955 9.24456 9.68556 10.54634 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011022 B = 0.003888 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.738401 B = 7199.233740 C = 8892.503126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.506 6.506 5 C -0.124 4.124 6 C 0.122 3.878 7 N -0.420 5.420 8 C -0.348 4.348 9 H 0.103 0.897 10 C 0.049 3.951 11 N -0.860 5.860 12 Si 0.917 3.083 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.269 1.269 16 C 0.457 3.543 17 O -0.592 6.592 18 C 0.129 3.871 19 F -0.192 7.192 20 C -0.123 4.123 21 C 0.026 3.974 22 N -0.497 5.497 23 C 0.090 3.910 24 C -0.186 4.186 25 C -0.135 4.135 26 C -0.137 4.137 27 C 0.016 3.984 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.064 0.936 35 H 0.274 0.726 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.088 0.912 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.869 -1.527 6.103 7.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.393 6.393 5 C -0.163 4.163 6 C -0.002 4.002 7 N -0.136 5.136 8 C -0.476 4.476 9 H 0.120 0.880 10 C -0.158 4.158 11 N -0.496 5.496 12 Si 0.743 3.257 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.194 1.194 16 C 0.243 3.757 17 O -0.478 6.478 18 C 0.107 3.893 19 F -0.172 7.172 20 C -0.161 4.161 21 C -0.102 4.102 22 N -0.221 5.221 23 C 0.000 4.000 24 C -0.245 4.245 25 C -0.193 4.193 26 C -0.195 4.195 27 C -0.112 4.112 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.143 0.857 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.105 0.895 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.693 -1.415 6.241 7.389 hybrid contribution -0.673 0.231 -0.746 1.031 sum 3.020 -1.184 5.495 6.381 Atomic orbital electron populations 1.23167 0.77376 1.03030 1.02320 1.86542 1.22737 1.34416 1.84644 1.24064 0.92369 0.80881 0.71691 1.90648 1.67274 1.36216 1.45115 1.21878 0.85840 1.03288 1.05277 1.21370 0.81924 0.91145 1.05729 1.43373 1.04584 1.61081 1.04603 1.19805 1.10130 1.28995 0.88622 0.87951 1.25532 0.95844 0.94122 1.00328 1.69717 1.27145 1.18591 1.34174 0.86134 0.79463 0.78593 0.81476 1.19563 1.20849 1.19380 1.20583 0.88762 0.81848 0.84486 1.90543 1.69582 1.55888 1.31790 1.21339 0.90306 0.87229 0.90431 1.92817 1.83796 1.61976 1.78620 1.22757 1.01996 0.93512 0.97872 1.23252 0.98170 0.94356 0.94384 1.65699 1.37705 1.09679 1.09029 1.21201 0.94733 0.95074 0.89022 1.22548 0.98609 1.02231 1.01080 1.21803 1.01218 0.97782 0.98462 1.21859 0.99296 0.96884 1.01459 1.23658 0.94139 0.97595 0.95807 0.88622 0.92204 0.92152 0.88514 0.87642 0.85749 0.91802 0.91541 0.89342 0.88670 0.90019 0.93151 0.91536 0.92287 0.91992 0.91904 0.92571 0.92553 0.92540 0.92497 0.91885 0.89450 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -6.03 10.57 -39.24 -0.41 -6.45 16 3 C 0.47 9.01 7.96 36.01 0.29 9.29 16 4 O -0.51 -10.98 15.73 -18.75 -0.29 -11.27 16 5 C -0.12 -2.48 6.14 -27.88 -0.17 -2.65 16 6 C 0.12 2.86 4.24 -4.04 -0.02 2.84 16 7 N -0.42 -10.04 2.50 -114.81 -0.29 -10.33 16 8 C -0.35 -8.32 7.31 -14.93 -0.11 -8.43 16 9 H 0.10 2.46 6.05 -52.49 -0.32 2.14 16 10 C 0.05 1.16 5.16 -17.47 -0.09 1.07 16 11 N -0.86 -21.59 11.14 55.50 0.62 -20.97 16 12 Si 0.92 18.84 29.57 -169.99 -5.03 13.82 16 13 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 14 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 16 C 0.46 10.68 6.58 -10.99 -0.07 10.61 16 17 O -0.59 -14.71 15.07 5.55 0.08 -14.63 16 18 C 0.13 2.64 1.18 -90.39 -0.11 2.53 16 19 F -0.19 -4.11 14.83 2.25 0.03 -4.08 16 20 C -0.12 -2.33 5.42 -25.35 -0.14 -2.46 16 21 C 0.03 0.41 5.05 -2.18 -0.01 0.40 16 22 N -0.50 -7.74 5.19 -214.38 -1.11 -8.86 16 23 C 0.09 1.16 0.71 -131.60 -0.09 1.06 16 24 C -0.19 -2.44 7.61 37.16 0.28 -2.16 16 25 C -0.14 -1.58 8.50 37.16 0.32 -1.26 16 26 C -0.14 -1.51 8.24 37.16 0.31 -1.21 16 27 C 0.02 0.29 4.58 -2.18 -0.01 0.28 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 32 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 33 H 0.12 3.17 5.37 -51.93 -0.28 2.89 16 34 H 0.06 1.60 7.46 -51.93 -0.39 1.21 16 35 H 0.27 6.59 8.32 -40.82 -0.34 6.25 16 36 H 0.09 1.66 8.04 -51.93 -0.42 1.24 16 37 H 0.09 2.02 7.44 -51.93 -0.39 1.63 16 38 H 0.08 1.15 7.66 -51.93 -0.40 0.75 16 39 H 0.05 0.79 5.77 -51.93 -0.30 0.49 16 40 H 0.07 0.96 6.29 -51.93 -0.33 0.63 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.86 5.94 -51.93 -0.31 0.56 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.69 7.18 -51.93 -0.37 0.32 16 46 H 0.06 0.62 6.87 -51.93 -0.36 0.27 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.09 1.65 4.21 -51.93 -0.22 1.43 16 50 H 0.09 1.52 7.72 -51.93 -0.40 1.12 16 LS Contribution 390.85 15.07 5.89 5.89 Total: -1.00 -28.07 390.85 -6.90 -34.97 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -7.83 Total: 10.48 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 1.44 Total: 11.42 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.78 Total: -40.16 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.63 Total: -32.35 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.03 Total: -4.08 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.07 -6.90 -34.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344416.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.608 kcal (2) G-P(sol) polarization free energy of solvation -28.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds