Wall clock time and date at job start Wed Apr 1 2020 05:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33012 * 119.99792 * 2 1 4 4 C 1.47065 * 120.00255 * 354.73737 * 3 2 1 5 5 O 1.21624 * 119.99727 * 5.05112 * 4 3 2 6 6 N 1.34777 * 119.99788 * 185.05366 * 4 3 2 7 7 C 1.39831 * 119.99639 * 184.50337 * 6 4 3 8 8 C 1.38897 * 120.07681 * 324.87755 * 7 6 4 9 9 C 1.38099 * 119.93086 * 180.30002 * 8 7 6 10 10 C 1.38283 * 120.07210 * 359.43983 * 9 8 7 11 11 C 1.50708 * 119.92982 * 180.29914 * 10 9 8 12 12 C 1.50692 * 109.47176 * 270.25509 * 11 10 9 13 13 H 1.08006 * 120.00204 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99995 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00301 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99987 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.46975 * 89.99687 * 16 14 12 18 18 H 1.48494 * 109.47252 * 210.00179 * 16 14 12 19 19 H 1.48503 * 109.46703 * 330.00101 * 16 14 12 20 20 C 1.38288 * 120.14424 * 0.56101 * 10 9 8 21 21 C 1.38103 * 120.07402 * 359.71595 * 20 10 9 22 22 C 1.50705 * 120.00024 * 180.02562 * 2 1 3 23 23 N 1.46904 * 109.46461 * 274.99650 * 22 2 1 24 24 C 1.47013 * 111.00138 * 293.62967 * 23 22 2 25 25 C 1.53096 * 109.25848 * 177.60728 * 24 23 22 26 26 O 1.43020 * 109.25445 * 56.85499 * 25 24 23 27 27 C 1.43013 * 113.73718 * 301.32687 * 26 25 24 28 28 C 1.47018 * 110.99525 * 170.00028 * 23 22 2 29 29 H 1.08997 * 109.47638 * 64.87378 * 1 2 3 30 30 H 1.09005 * 109.47223 * 184.87566 * 1 2 3 31 31 H 1.09006 * 109.47228 * 304.86993 * 1 2 3 32 32 H 1.08002 * 120.00219 * 174.74084 * 3 2 1 33 33 H 0.96993 * 120.00476 * 4.50318 * 6 4 3 34 34 H 1.07998 * 120.03199 * 0.02562 * 8 7 6 35 35 H 1.08001 * 119.96639 * 179.72007 * 9 8 7 36 36 H 1.08996 * 109.46850 * 30.26183 * 11 10 9 37 37 H 1.08999 * 109.46963 * 150.25503 * 11 10 9 38 38 H 0.97001 * 120.00021 * 180.02562 * 15 14 12 39 39 H 1.08005 * 119.96338 * 179.74338 * 20 10 9 40 40 H 1.07997 * 120.04090 * 179.97438 * 21 20 10 41 41 H 1.08997 * 109.46911 * 34.98955 * 22 2 1 42 42 H 1.08999 * 109.46974 * 154.99665 * 22 2 1 43 43 H 1.08991 * 109.51034 * 297.55120 * 24 23 22 44 44 H 1.09011 * 109.50276 * 57.68206 * 24 23 22 45 45 H 1.08995 * 109.50919 * 296.92531 * 25 24 23 46 46 H 1.09000 * 109.54307 * 176.80503 * 25 24 23 47 47 H 1.08994 * 109.51148 * 298.73409 * 27 26 25 48 48 H 1.09001 * 109.54106 * 178.62336 * 27 26 25 49 49 H 1.09003 * 109.50653 * 302.32605 * 28 23 22 50 50 H 1.09000 * 109.50379 * 62.41370 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1519 0.0000 4 6 1.4413 2.4229 -0.1168 5 8 0.2251 2.4269 -0.1209 6 7 2.1195 3.5831 -0.2194 7 6 1.4277 4.7981 -0.2356 8 6 0.1865 4.8843 -0.8530 9 6 -0.4913 6.0873 -0.8726 10 6 0.0591 7.2027 -0.2683 11 6 -0.6865 8.5124 -0.2858 12 6 -0.3018 9.2930 -1.5161 13 1 0.4109 8.8818 -2.2157 14 6 -0.8606 10.5317 -1.7492 15 7 -0.5254 11.2128 -2.8231 16 14 -2.0938 11.2427 -0.5395 17 1 -1.3760 12.0357 0.4906 18 1 -3.0481 12.1201 -1.2637 19 1 -2.8376 10.1372 0.1162 20 6 1.2947 7.1205 0.3472 21 6 1.9804 5.9218 0.3655 22 6 2.2605 -1.3051 -0.0006 23 7 2.4008 -1.7900 1.3790 24 6 3.2628 -0.8965 2.1664 25 6 3.3332 -1.4048 3.6088 26 8 3.8069 -2.7543 3.6108 27 6 2.9907 -3.6520 2.8538 28 6 2.9167 -3.1665 1.4037 29 1 -0.3634 0.4363 -0.9304 30 1 -0.3634 -1.0240 0.0873 31 1 -0.3634 0.5876 0.8432 32 1 3.2486 1.1540 0.0857 33 1 3.0874 3.5752 -0.2820 34 1 -0.2460 4.0124 -1.3211 35 1 -1.4544 6.1561 -1.3565 36 1 -1.7592 8.3195 -0.2983 37 1 -0.4311 9.0877 0.6041 38 1 -0.9182 12.0845 -2.9869 39 1 1.7237 7.9945 0.8147 40 1 2.9454 5.8583 0.8460 41 1 1.7131 -2.0404 -0.5902 42 1 3.2487 -1.1539 -0.4349 43 1 4.2638 -0.8837 1.7357 44 1 2.8482 0.1116 2.1557 45 1 2.3403 -1.3670 4.0570 46 1 4.0160 -0.7786 4.1832 47 1 1.9879 -3.6796 3.2800 48 1 3.4254 -4.6512 2.8812 49 1 2.2497 -3.8154 0.8361 50 1 3.9120 -3.1901 0.9600 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928401426.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:22 Heat of formation + Delta-G solvation = -30.566884 kcal Electronic energy + Delta-G solvation = -28911.955934 eV Core-core repulsion = 24904.521064 eV Total energy + Delta-G solvation = -4007.434870 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -40.54405 -40.01957 -38.41457 -37.02085 -35.07339 -34.11370 -32.95549 -31.67761 -30.92972 -30.34313 -29.01242 -28.20700 -26.77422 -25.12166 -24.52788 -23.15974 -22.36820 -21.38792 -20.83699 -20.04021 -19.10343 -17.22210 -17.15133 -16.99880 -16.75480 -16.57326 -15.74275 -15.56150 -15.40751 -15.26653 -14.90475 -14.63953 -14.38926 -14.10638 -14.03027 -13.93433 -13.29175 -13.04421 -12.92016 -12.85690 -12.56613 -12.43722 -12.30149 -12.04053 -11.93641 -11.89366 -11.72666 -11.63503 -11.48445 -11.08917 -10.82683 -10.43039 -10.25067 -10.19966 -10.02972 -9.79062 -9.55836 -9.38249 -9.29221 -8.95546 -8.57263 -8.32593 -7.40469 -6.06415 -4.05315 0.97252 1.94326 2.03503 3.04774 3.17700 3.29634 3.32223 3.37563 3.41113 3.44364 4.16450 4.35962 4.39773 4.42713 4.43450 4.50186 4.63134 4.65486 4.75756 4.85202 5.01146 5.02633 5.05380 5.14724 5.25409 5.25434 5.33761 5.38609 5.42570 5.45930 5.54900 5.70565 5.76436 5.87906 5.99007 6.03318 6.13280 6.14454 6.23489 6.34299 6.38401 6.58446 6.64083 6.76791 6.84344 6.96947 7.05659 7.09243 7.51711 7.60274 7.62823 7.73021 8.19571 8.50955 8.98991 9.54077 11.06500 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028674 B = 0.001696 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.256489 B =16502.523397 C =16783.157869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.016 4.016 3 C -0.225 4.225 4 C 0.541 3.459 5 O -0.520 6.520 6 N -0.666 5.666 7 C 0.108 3.892 8 C -0.116 4.116 9 C -0.107 4.107 10 C -0.039 4.039 11 C 0.014 3.986 12 C -0.512 4.512 13 H 0.074 0.926 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.264 1.264 20 C -0.107 4.107 21 C -0.143 4.143 22 C 0.082 3.918 23 N -0.530 5.530 24 C 0.011 3.989 25 C 0.064 3.936 26 O -0.386 6.386 27 C 0.063 3.937 28 C 0.017 3.983 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.405 0.595 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.264 0.736 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.044 0.956 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.100 0.900 47 H 0.061 0.939 48 H 0.099 0.901 49 H 0.088 0.912 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.532 -30.673 9.691 33.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.019 4.019 3 C -0.248 4.248 4 C 0.331 3.669 5 O -0.398 6.398 6 N -0.309 5.309 7 C 0.015 3.985 8 C -0.136 4.136 9 C -0.125 4.125 10 C -0.039 4.039 11 C -0.023 4.023 12 C -0.550 4.550 13 H 0.092 0.908 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.705 3.295 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.189 1.189 20 C -0.125 4.125 21 C -0.163 4.163 22 C -0.045 4.045 23 N -0.255 5.255 24 C -0.117 4.117 25 C -0.013 4.013 26 O -0.305 6.305 27 C -0.014 4.014 28 C -0.111 4.111 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.141 0.859 33 H 0.240 0.760 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.080 0.920 46 H 0.118 0.882 47 H 0.079 0.921 48 H 0.117 0.883 49 H 0.107 0.893 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.349 -30.619 9.919 33.251 hybrid contribution 0.680 0.730 -0.169 1.012 sum 9.029 -29.890 9.749 32.711 Atomic orbital electron populations 1.20985 0.89997 1.01471 1.04203 1.22397 0.97299 0.92962 0.89217 1.22390 0.99979 0.92024 1.10358 1.18528 0.87547 0.83955 0.76827 1.90803 1.13474 1.86830 1.48657 1.43256 1.10226 1.04594 1.72871 1.17538 0.94712 0.84854 1.01396 1.21118 0.94655 0.98303 0.99496 1.20986 1.00389 0.91678 0.99475 1.20311 0.94280 0.95983 0.93359 1.18806 0.95373 0.90035 0.98076 1.20945 1.26384 1.01651 1.06029 0.90824 1.25003 0.96342 0.96700 0.95237 1.69903 1.43969 1.13435 1.26597 0.86805 0.81793 0.79414 0.81514 1.20195 1.21265 1.18885 1.20848 0.94820 0.96478 1.00371 1.20754 1.00733 0.92877 1.01960 1.21323 0.98853 0.94586 0.89721 1.62179 1.49643 1.02060 1.11666 1.22922 0.95613 0.98206 0.94923 1.22681 1.00521 0.83036 0.95101 1.87997 1.51889 1.18638 1.71961 1.22664 0.95906 0.93291 0.89506 1.22826 0.99397 0.90154 0.98690 0.90015 0.92673 0.89576 0.85880 0.76011 0.85239 0.86040 0.95386 0.95856 0.92633 0.85964 0.86736 0.88905 0.93314 0.93737 0.88923 0.92034 0.88235 0.92082 0.88336 0.89338 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 8.34 36.00 0.30 -0.77 16 2 C -0.02 -0.14 5.02 -101.16 -0.51 -0.65 16 3 C -0.23 -1.99 8.17 -37.82 -0.31 -2.30 16 4 C 0.54 6.80 7.57 -12.68 -0.10 6.71 16 5 O -0.52 -8.17 10.54 5.26 0.06 -8.11 16 6 N -0.67 -8.21 5.33 -10.94 -0.06 -8.27 16 7 C 0.11 1.74 6.30 -83.72 -0.53 1.21 16 8 C -0.12 -2.11 8.69 -39.39 -0.34 -2.46 16 9 C -0.11 -2.14 9.69 -39.62 -0.38 -2.53 16 10 C -0.04 -0.83 5.07 -104.58 -0.53 -1.36 16 11 C 0.01 0.34 4.17 -29.03 -0.12 0.22 16 12 C -0.51 -14.61 9.65 -34.44 -0.33 -14.94 16 13 H 0.07 2.30 7.98 -52.48 -0.42 1.88 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 16 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 20 C -0.11 -2.01 9.69 -39.61 -0.38 -2.40 16 21 C -0.14 -2.30 9.97 -39.39 -0.39 -2.69 16 22 C 0.08 0.52 5.07 -4.97 -0.03 0.49 16 23 N -0.53 -3.59 4.72 -235.74 -1.11 -4.70 16 24 C 0.01 0.08 5.33 -3.71 -0.02 0.06 16 25 C 0.06 0.43 7.01 37.21 0.26 0.69 16 26 O -0.39 -3.14 10.83 -35.23 -0.38 -3.52 16 27 C 0.06 0.36 7.01 37.21 0.26 0.63 16 28 C 0.02 0.09 5.64 -3.71 -0.02 0.07 16 29 H 0.08 0.90 7.36 -51.93 -0.38 0.52 16 30 H 0.05 0.45 8.01 -51.93 -0.42 0.03 16 31 H 0.09 1.02 7.10 -51.93 -0.37 0.65 16 32 H 0.12 0.78 8.05 -52.49 -0.42 0.36 16 33 H 0.41 3.59 8.80 -40.82 -0.36 3.23 16 34 H 0.13 2.33 6.23 -52.49 -0.33 2.01 16 35 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 36 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 37 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.12 2.18 8.06 -52.48 -0.42 1.76 16 40 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 41 H 0.09 0.50 8.04 -51.93 -0.42 0.08 16 42 H 0.05 0.28 8.01 -51.93 -0.42 -0.14 16 43 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.09 0.66 6.29 -51.92 -0.33 0.33 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.09 0.36 8.09 -51.93 -0.42 -0.06 16 50 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 401.37 15.07 6.05 6.05 Total: -1.00 -33.69 401.37 -10.62 -44.31 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.01 Total: 2.40 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -3.27 Total: -18.11 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: -0.40 Total: -39.85 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.33 Total: -11.63 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.69 -10.62 -44.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401426.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.745 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds