Wall clock time and date at job start Wed Apr 1 2020 03:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46967 * 2 1 4 4 C 1.53002 * 109.47126 * 240.00331 * 2 1 3 5 5 N 1.46498 * 109.47353 * 120.00032 * 2 1 3 6 6 C 1.34773 * 119.99728 * 59.99867 * 5 2 1 7 7 O 1.21288 * 120.00111 * 0.02562 * 6 5 2 8 8 C 1.50701 * 119.99927 * 180.02562 * 6 5 2 9 9 H 1.08995 * 110.41537 * 324.89656 * 8 6 5 10 10 C 1.55123 * 110.34370 * 87.34550 * 8 6 5 11 11 C 1.55157 * 101.48881 * 156.05789 * 10 8 6 12 12 C 1.54319 * 102.94160 * 324.33157 * 11 10 8 13 13 N 1.47023 * 107.27369 * 22.19174 * 12 11 10 14 14 C 1.34773 * 125.65233 * 181.02457 * 13 12 11 15 15 O 1.21552 * 120.00245 * 184.49747 * 14 13 12 16 16 C 1.47888 * 119.99827 * 4.49435 * 14 13 12 17 17 C 1.39917 * 120.02231 * 352.99261 * 16 14 13 18 18 C 1.38333 * 120.35559 * 179.97438 * 17 16 14 19 19 C 1.37755 * 120.41170 * 359.97438 * 18 17 16 20 20 C 1.40748 * 120.04036 * 0.02562 * 19 18 17 21 21 C 1.41432 * 120.17669 * 180.02562 * 20 19 18 22 22 H 1.08001 * 120.00337 * 152.96627 * 21 20 19 23 23 C 1.39941 * 119.99879 * 332.95748 * 21 20 19 24 24 N 1.30835 * 119.99611 * 167.07976 * 23 21 20 25 25 Si 1.86797 * 120.00310 * 347.07969 * 23 21 20 26 26 H 1.48504 * 109.46909 * 95.47932 * 25 23 21 27 27 H 1.48491 * 109.47151 * 215.48220 * 25 23 21 28 28 H 1.48497 * 109.46844 * 335.48247 * 25 23 21 29 29 C 1.38992 * 120.02642 * 172.95110 * 16 14 13 30 30 H 1.08997 * 109.47479 * 299.99893 * 1 2 3 31 31 H 1.09003 * 109.47319 * 59.99839 * 1 2 3 32 32 H 1.08997 * 109.47388 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46760 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47232 * 300.00213 * 3 2 1 35 35 H 1.08993 * 109.46931 * 60.00288 * 3 2 1 36 36 H 1.08997 * 109.46867 * 300.00173 * 4 2 1 37 37 H 1.09003 * 109.47161 * 59.99733 * 4 2 1 38 38 H 1.08995 * 109.47340 * 179.97438 * 4 2 1 39 39 H 0.96991 * 120.00325 * 240.00005 * 5 2 1 40 40 H 1.09005 * 111.19399 * 37.95040 * 10 8 6 41 41 H 1.09001 * 110.93923 * 274.05186 * 10 8 6 42 42 H 1.09001 * 110.72190 * 205.96465 * 11 10 8 43 43 H 1.09003 * 110.71683 * 82.69162 * 11 10 8 44 44 H 1.09001 * 109.88024 * 262.77307 * 12 11 10 45 45 H 1.08996 * 110.01146 * 141.67866 * 12 11 10 46 46 H 1.07998 * 119.82393 * 0.25910 * 17 16 14 47 47 H 1.08001 * 119.79633 * 180.02562 * 18 17 16 48 48 H 1.07998 * 119.97929 * 180.02562 * 19 18 17 49 49 H 0.97001 * 119.99639 * 180.02562 * 24 23 21 50 50 H 1.08003 * 120.20372 * 0.04422 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 1.6928 -1.9809 1.4094 7 8 0.9958 -2.5704 0.6108 8 6 2.1947 -2.6912 2.6401 9 1 3.1948 -2.3435 2.8984 10 6 1.2194 -2.4698 3.8259 11 6 1.5288 -3.7032 4.7149 12 6 1.8142 -4.8121 3.6804 13 7 2.1981 -4.1498 2.4252 14 6 2.5076 -4.7729 1.2709 15 8 2.8909 -4.1269 0.3152 16 6 2.3810 -6.2426 1.1671 17 6 2.0825 -7.0016 2.3039 18 6 1.9619 -8.3768 2.2146 19 6 2.1337 -9.0148 1.0058 20 6 2.4344 -8.2679 -0.1486 21 6 2.6108 -8.9199 -1.3912 22 1 2.4084 -8.3922 -2.3116 23 6 3.0478 -10.2488 -1.4283 24 7 2.9715 -10.9317 -2.5417 25 14 3.7399 -11.0478 0.1118 26 1 2.6646 -11.8032 0.8035 27 1 4.8358 -11.9773 -0.2626 28 1 4.2694 -9.9979 1.0187 29 6 2.5575 -6.8710 -0.0601 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7488 -1.2493 37 1 1.6766 -0.2073 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 2.5760 -0.2193 1.8346 40 1 0.1823 -2.4803 3.4905 41 1 1.4486 -1.5424 4.3509 42 1 0.6665 -3.9617 5.3295 43 1 2.4057 -3.5205 5.3362 44 1 0.9180 -5.4124 3.5237 45 1 2.6290 -5.4466 4.0289 46 1 1.9409 -6.5108 3.2555 47 1 1.7309 -8.9538 3.0978 48 1 2.0375 -10.0887 0.9440 49 1 3.2740 -11.8529 -2.5673 50 1 2.7881 -6.2891 -0.9403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928730325.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:58 Heat of formation + Delta-G solvation = -25.096670 kcal Electronic energy + Delta-G solvation = -31151.016435 eV Core-core repulsion = 27143.818771 eV Total energy + Delta-G solvation = -4007.197664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.75242 -39.24588 -37.64408 -36.79028 -36.16171 -33.69576 -32.41157 -31.66742 -30.55098 -29.90881 -29.10887 -27.51949 -27.21364 -25.21601 -24.73469 -22.73063 -21.84721 -21.10294 -20.39530 -19.61100 -19.27364 -17.87490 -17.24177 -16.33206 -15.95234 -15.77971 -15.43503 -14.96425 -14.76463 -14.50390 -14.15512 -14.07442 -13.85301 -13.61970 -13.45243 -13.27271 -13.11982 -12.72452 -12.65070 -12.54414 -12.35424 -12.20529 -12.09982 -12.03745 -11.91079 -11.78188 -11.57521 -11.16381 -11.04356 -11.03781 -11.01774 -10.87773 -10.60194 -10.36652 -9.71566 -9.55753 -9.44205 -9.36377 -9.02985 -8.99647 -8.38868 -7.75812 -7.69491 -6.94271 -4.50072 2.02713 2.59147 2.70427 3.01580 3.07493 3.21420 3.29469 3.40569 3.72989 3.96186 4.27903 4.41412 4.51785 4.59590 4.74366 4.81919 4.93455 4.98792 5.02607 5.21340 5.36256 5.39966 5.40723 5.46633 5.50559 5.60060 5.64476 5.69258 5.72457 5.74321 5.76553 5.88510 5.94161 5.96592 5.99829 6.15188 6.27015 6.31297 6.47855 6.50921 6.67027 6.74143 6.77001 7.05248 7.28020 7.46128 7.56531 7.58543 7.78543 7.83686 8.05523 8.33055 8.41584 8.59125 8.75556 8.82275 10.08153 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015305 B = 0.003099 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.016420 B = 9034.169766 C =10460.419702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.172 3.828 3 C -0.153 4.153 4 C -0.163 4.163 5 N -0.728 5.728 6 C 0.518 3.482 7 O -0.499 6.499 8 C 0.119 3.881 9 H 0.088 0.912 10 C -0.120 4.120 11 C -0.135 4.135 12 C 0.099 3.901 13 N -0.607 5.607 14 C 0.585 3.415 15 O -0.527 6.527 16 C -0.099 4.099 17 C -0.252 4.252 18 C -0.085 4.085 19 C -0.223 4.223 20 C 0.081 3.919 21 C -0.438 4.438 22 H 0.093 0.907 23 C 0.079 3.921 24 N -0.809 5.809 25 Si 0.916 3.084 26 H -0.272 1.272 27 H -0.294 1.294 28 H -0.240 1.240 29 C -0.136 4.136 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.394 0.606 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.132 0.868 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.286 0.714 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 19.798 14.782 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.086 3.914 3 C -0.211 4.211 4 C -0.221 4.221 5 N -0.382 5.382 6 C 0.302 3.698 7 O -0.371 6.371 8 C 0.011 3.989 9 H 0.106 0.894 10 C -0.158 4.158 11 C -0.173 4.173 12 C -0.024 4.024 13 N -0.344 5.344 14 C 0.378 3.622 15 O -0.403 6.403 16 C -0.102 4.102 17 C -0.271 4.271 18 C -0.103 4.103 19 C -0.243 4.243 20 C 0.078 3.922 21 C -0.466 4.466 22 H 0.111 0.889 23 C -0.139 4.139 24 N -0.433 5.433 25 Si 0.744 3.256 26 H -0.198 1.198 27 H -0.222 1.222 28 H -0.163 1.163 29 C -0.156 4.156 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.227 0.773 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.149 0.851 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.096 0.904 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.100 19.429 13.330 23.655 hybrid contribution 0.602 -0.359 0.801 1.065 sum -1.498 19.070 14.131 23.782 Atomic orbital electron populations 1.22212 0.94497 1.04057 1.01257 1.20274 0.94173 0.91384 0.85524 1.22077 1.01556 0.94738 1.02698 1.22208 1.01023 1.03322 0.95592 1.46051 1.54797 1.12103 1.25278 1.20374 0.80739 0.81497 0.87193 1.90698 1.36355 1.65047 1.45049 1.21781 0.99819 0.83557 0.93733 0.89395 1.22762 0.99579 0.99115 0.94350 1.22764 1.02641 0.94514 0.97359 1.22544 1.01227 0.95137 0.83484 1.48133 1.70712 1.04091 1.11448 1.18452 0.75646 0.88081 0.80043 1.90706 1.45988 1.67258 1.36342 1.19303 1.05368 0.89875 0.95637 1.21735 1.12797 0.94228 0.98353 1.20513 0.99361 0.94189 0.96273 1.21070 1.10786 0.98215 0.94197 1.17687 0.90067 0.91547 0.92884 1.19559 1.37534 0.95858 0.93664 0.88946 1.26203 0.93193 0.96591 0.97923 1.69661 1.34973 1.10363 1.28350 0.86260 0.78520 0.79094 0.81714 1.19847 1.22167 1.16298 1.21194 1.04577 0.94241 0.95595 0.93039 0.92115 0.90276 0.92032 0.91004 0.92188 0.89601 0.92441 0.92817 0.77264 0.89981 0.89509 0.89600 0.90322 0.89804 0.89959 0.85064 0.88440 0.88431 0.90375 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.40 37.16 0.31 -1.50 16 2 C 0.17 1.88 1.06 -131.82 -0.14 1.74 16 3 C -0.15 -1.14 8.59 37.16 0.32 -0.82 16 4 C -0.16 -2.24 8.40 37.16 0.31 -1.93 16 5 N -0.73 -8.02 5.11 -47.61 -0.24 -8.26 16 6 C 0.52 7.60 5.41 -10.99 -0.06 7.54 16 7 O -0.50 -9.69 10.71 -16.81 -0.18 -9.87 16 8 C 0.12 1.49 3.55 -67.45 -0.24 1.25 16 9 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 10 C -0.12 -1.03 6.50 -24.47 -0.16 -1.18 16 11 C -0.13 -1.06 6.95 -24.90 -0.17 -1.23 16 12 C 0.10 1.19 4.87 -3.07 -0.01 1.18 16 13 N -0.61 -9.77 3.12 -170.45 -0.53 -10.30 16 14 C 0.59 12.47 6.97 -12.31 -0.09 12.38 16 15 O -0.53 -12.68 14.27 -17.04 -0.24 -12.93 16 16 C -0.10 -2.25 5.87 -105.04 -0.62 -2.87 16 17 C -0.25 -5.06 8.61 -38.92 -0.34 -5.39 16 18 C -0.09 -1.79 10.01 -39.72 -0.40 -2.19 16 19 C -0.22 -5.41 6.87 -38.81 -0.27 -5.67 16 20 C 0.08 2.14 5.23 -106.88 -0.56 1.58 16 21 C -0.44 -12.27 9.62 -37.73 -0.36 -12.63 16 22 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 23 C 0.08 2.13 5.47 -17.34 -0.09 2.03 16 24 N -0.81 -22.04 13.93 55.55 0.77 -21.27 16 25 Si 0.92 21.04 24.34 -169.99 -4.14 16.90 16 26 H -0.27 -5.99 6.78 56.52 0.38 -5.61 16 27 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.24 -5.59 6.38 56.52 0.36 -5.23 16 29 C -0.14 -3.48 9.34 -38.44 -0.36 -3.84 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.15 6.17 -51.93 -0.32 0.83 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 1.56 6.17 -51.93 -0.32 1.24 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.39 3.02 8.47 -40.82 -0.35 2.67 16 40 H 0.08 0.80 8.06 -51.93 -0.42 0.39 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 1.08 6.67 -51.93 -0.35 0.74 16 45 H 0.08 0.96 6.78 -51.93 -0.35 0.61 16 46 H 0.13 2.10 2.71 -59.18 -0.16 1.93 16 47 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 48 H 0.10 2.33 3.95 -52.49 -0.21 2.12 16 49 H 0.29 7.02 8.30 -40.82 -0.34 6.68 16 50 H 0.11 2.99 7.66 -52.48 -0.40 2.59 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -34.16 384.05 -9.26 -43.42 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.56 Total: 8.07 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.92 Total: -11.55 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.00 Total: -39.83 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.42 Total: -22.79 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.14 Total: 16.90 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.16 -9.26 -43.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928730325.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.320 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds