Wall clock time and date at job start Wed Apr 1 2020 03:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46968 * 2 1 4 4 C 1.52993 * 109.46940 * 239.99545 * 2 1 3 5 5 N 1.46499 * 109.46506 * 119.99736 * 2 1 3 6 6 C 1.34770 * 120.00400 * 60.00694 * 5 2 1 7 7 O 1.21287 * 120.00038 * 359.97438 * 6 5 2 8 8 C 1.50699 * 120.00102 * 179.97438 * 6 5 2 9 9 H 1.09000 * 110.41236 * 321.13327 * 8 6 5 10 10 C 1.55130 * 110.34525 * 83.57824 * 8 6 5 11 11 C 1.55158 * 101.48425 * 156.05748 * 10 8 6 12 12 C 1.54312 * 102.94537 * 324.33295 * 11 10 8 13 13 N 1.47020 * 107.27270 * 22.19290 * 12 11 10 14 14 C 1.34783 * 125.65135 * 181.01888 * 13 12 11 15 15 O 1.21587 * 119.99947 * 184.48297 * 14 13 12 16 16 C 1.47641 * 119.99726 * 4.49399 * 14 13 12 17 17 C 1.40010 * 119.89622 * 173.51544 * 16 14 13 18 18 C 1.36320 * 120.10878 * 179.97438 * 17 16 14 19 19 C 1.40879 * 119.89272 * 0.02562 * 18 17 16 20 20 C 1.41108 * 120.10424 * 179.72687 * 19 18 17 21 21 H 1.08004 * 120.00069 * 204.40558 * 20 19 18 22 22 C 1.40225 * 120.00099 * 24.40884 * 20 19 18 23 23 N 1.30644 * 119.99970 * 11.12009 * 22 20 19 24 24 Si 1.86798 * 119.99932 * 191.12645 * 22 20 19 25 25 H 1.48498 * 109.47426 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47442 * 119.99572 * 24 22 20 27 27 H 1.48506 * 109.46887 * 239.99571 * 24 22 20 28 28 C 1.40897 * 119.79308 * 0.02562 * 19 18 17 29 29 C 1.36315 * 119.89030 * 359.95460 * 28 19 18 30 30 H 1.09002 * 109.47271 * 300.00266 * 1 2 3 31 31 H 1.09005 * 109.47122 * 60.00324 * 1 2 3 32 32 H 1.09004 * 109.47048 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46929 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46934 * 299.99791 * 3 2 1 35 35 H 1.08996 * 109.46946 * 59.99601 * 3 2 1 36 36 H 1.08995 * 109.47476 * 299.99934 * 4 2 1 37 37 H 1.08999 * 109.47436 * 60.00327 * 4 2 1 38 38 H 1.09009 * 109.46803 * 179.97438 * 4 2 1 39 39 H 0.97010 * 119.99639 * 239.99755 * 5 2 1 40 40 H 1.08995 * 111.19258 * 37.95603 * 10 8 6 41 41 H 1.08995 * 110.90758 * 274.03782 * 10 8 6 42 42 H 1.09004 * 110.71939 * 205.96620 * 11 10 8 43 43 H 1.09005 * 110.71648 * 82.69927 * 11 10 8 44 44 H 1.08997 * 109.88713 * 262.77543 * 12 11 10 45 45 H 1.09007 * 110.01496 * 141.68203 * 12 11 10 46 46 H 1.08006 * 119.94756 * 359.97438 * 17 16 14 47 47 H 1.08002 * 120.05145 * 180.02562 * 18 17 16 48 48 H 0.96999 * 120.00018 * 180.02562 * 23 22 20 49 49 H 1.07998 * 120.05493 * 179.97438 * 28 19 18 50 50 H 1.08000 * 119.94487 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0182 -0.6906 1.1962 6 6 1.6927 -1.9809 1.4095 7 8 0.9952 -2.5703 0.6114 8 6 2.1954 -2.6913 2.6398 9 1 3.2205 -2.3928 2.8590 10 6 1.2721 -2.3928 3.8501 11 6 1.5439 -3.6224 4.7567 12 6 1.7362 -4.7664 3.7391 13 7 2.1142 -4.1521 2.4579 14 6 2.3527 -4.8150 1.3089 15 8 2.7387 -4.2105 0.3271 16 6 2.1451 -6.2753 1.2425 17 6 2.2614 -6.9416 0.0166 18 6 2.0711 -8.2898 -0.0497 19 6 1.7564 -9.0127 1.1179 20 6 1.5528 -10.4075 1.0534 21 1 0.9498 -10.9004 1.8017 22 6 2.1335 -11.1537 0.0179 23 7 3.0321 -10.6069 -0.7568 24 14 1.6219 -12.9296 -0.2540 25 1 0.5960 -13.3086 0.7505 26 1 1.0571 -13.0786 -1.6193 27 1 2.8063 -13.8136 -0.1090 28 6 1.6393 -8.3376 2.3490 29 6 1.8318 -6.9893 2.4054 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9563 0.8899 36 1 1.6767 -1.7489 -1.2491 37 1 1.6767 -0.2076 -2.1392 38 1 3.1300 -0.7209 -1.2493 39 1 2.5759 -0.2191 1.8348 40 1 0.2257 -2.3544 3.5474 41 1 1.5678 -1.4686 4.3464 42 1 0.6892 -3.8211 5.4034 43 1 2.4487 -3.4743 5.3461 44 1 0.8047 -5.3206 3.6238 45 1 2.5268 -5.4367 4.0763 46 1 2.5022 -6.3865 -0.8781 47 1 2.1614 -8.8029 -0.9957 48 1 3.4335 -11.1230 -1.4733 49 1 1.3979 -8.8875 3.2466 50 1 1.7428 -6.4710 3.3487 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928731099.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:08 Heat of formation + Delta-G solvation = -51.498824 kcal Electronic energy + Delta-G solvation = -30957.449220 eV Core-core repulsion = 26949.106673 eV Total energy + Delta-G solvation = -4008.342547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.83212 -40.42705 -39.03066 -38.10650 -37.20603 -35.70290 -33.48661 -32.64514 -31.80811 -31.43654 -29.92199 -28.25426 -28.23148 -27.72925 -25.49388 -23.57755 -23.14348 -22.51386 -21.68112 -20.59327 -20.38847 -19.33485 -18.60523 -17.83558 -17.19037 -17.07681 -16.58689 -16.24491 -15.90812 -15.76723 -15.27350 -15.07885 -15.04750 -14.73277 -14.60680 -14.48055 -14.37864 -14.14111 -13.80862 -13.59234 -13.34216 -13.23220 -13.16274 -13.03667 -12.96539 -12.84837 -12.73868 -12.61475 -12.47976 -12.42601 -12.09672 -12.04639 -11.94246 -11.67108 -11.56926 -11.18579 -11.03691 -10.59041 -10.50056 -10.00060 -9.65274 -9.47658 -9.37071 -8.71729 -6.50142 0.47228 1.15540 1.36483 1.41080 1.53961 1.70245 2.00797 2.14505 2.24726 2.38962 2.83148 3.49528 3.58908 3.69386 3.78955 3.97632 3.99998 4.11931 4.15239 4.17290 4.24377 4.38444 4.44073 4.54735 4.65291 4.68634 4.75673 4.77760 4.82798 4.87938 4.91775 4.94508 4.96943 4.99209 5.00712 5.10778 5.20028 5.24096 5.27813 5.30897 5.36242 5.38392 5.49161 5.59419 5.71573 5.80004 6.02153 6.02592 6.19838 6.56882 6.64195 6.73599 6.77846 6.91396 7.40971 7.55984 8.19087 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017922 B = 0.002672 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.913024 B =10475.715973 C =11603.382605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 C -0.142 4.142 4 C -0.160 4.160 5 N -0.713 5.713 6 C 0.506 3.494 7 O -0.552 6.552 8 C 0.108 3.892 9 H 0.109 0.891 10 C -0.107 4.107 11 C -0.117 4.117 12 C 0.082 3.918 13 N -0.613 5.613 14 C 0.585 3.415 15 O -0.589 6.589 16 C -0.285 4.285 17 C -0.058 4.058 18 C -0.204 4.204 19 C 0.095 3.905 20 C -0.469 4.469 21 H 0.092 0.908 22 C 0.026 3.974 23 N -0.813 5.813 24 Si 0.995 3.005 25 H -0.250 1.250 26 H -0.267 1.267 27 H -0.263 1.263 28 C -0.246 4.246 29 C -0.080 4.080 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.413 0.587 40 H 0.066 0.934 41 H 0.131 0.869 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.112 0.888 48 H 0.292 0.708 49 H 0.119 0.881 50 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 20.109 12.172 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.083 3.917 3 C -0.200 4.200 4 C -0.218 4.218 5 N -0.368 5.368 6 C 0.292 3.708 7 O -0.428 6.428 8 C 0.001 3.999 9 H 0.126 0.874 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.040 4.040 13 N -0.347 5.347 14 C 0.380 3.620 15 O -0.471 6.471 16 C -0.289 4.289 17 C -0.077 4.077 18 C -0.223 4.223 19 C 0.092 3.908 20 C -0.497 4.497 21 H 0.110 0.890 22 C -0.191 4.191 23 N -0.438 5.438 24 Si 0.815 3.185 25 H -0.173 1.173 26 H -0.191 1.191 27 H -0.187 1.187 28 C -0.265 4.265 29 C -0.097 4.097 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.250 0.750 40 H 0.085 0.915 41 H 0.149 0.851 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.130 0.870 48 H 0.103 0.897 49 H 0.137 0.863 50 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.999 19.919 10.816 22.754 hybrid contribution 0.370 -1.047 -1.021 1.508 sum -1.629 18.872 9.795 21.325 Atomic orbital electron populations 1.22137 0.94761 1.01714 1.02797 1.20378 0.94083 0.93203 0.84075 1.22006 1.01913 0.91687 1.04368 1.22153 1.00407 1.00851 0.98377 1.45937 1.54266 1.11110 1.25512 1.20915 0.80177 0.82339 0.87388 1.90698 1.38792 1.66380 1.46922 1.22192 1.02014 0.81226 0.94420 0.87352 1.22823 0.98259 1.01232 0.92214 1.22766 1.05243 0.91345 0.96080 1.22735 1.00589 0.97782 0.82856 1.48069 1.70422 1.06141 1.10071 1.18083 0.75619 0.87091 0.81163 1.90619 1.49654 1.70213 1.36642 1.19226 1.22158 0.91869 0.95677 1.20533 0.96855 0.94415 0.95909 1.21157 1.09242 0.92373 0.99537 1.18228 0.87040 0.94118 0.91432 1.20181 1.27058 0.92631 1.09847 0.88950 1.27114 0.92383 1.06236 0.93358 1.69810 1.19034 1.40382 1.14535 0.84959 0.79489 0.74710 0.79387 1.17264 1.19144 1.18714 1.21043 1.13741 0.94946 0.96800 1.22225 0.94492 0.94439 0.98590 0.91082 0.90877 0.94515 0.91385 0.89980 0.89884 0.94898 0.90803 0.93476 0.75018 0.91494 0.85091 0.87179 0.87557 0.91170 0.89724 0.90358 0.87024 0.89655 0.86265 0.81078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.40 71.98 0.60 -2.97 16 2 C 0.17 3.68 1.06 3.60 0.00 3.68 16 3 C -0.14 -1.76 8.59 71.98 0.62 -1.15 16 4 C -0.16 -4.67 8.40 71.98 0.60 -4.07 16 5 N -0.71 -15.73 5.10 -422.94 -2.16 -17.89 16 6 C 0.51 15.93 5.55 87.66 0.49 16.41 16 7 O -0.55 -24.01 10.40 19.01 0.20 -23.81 16 8 C 0.11 2.79 3.55 44.80 0.16 2.95 16 9 H 0.11 2.30 8.14 -2.39 -0.02 2.29 16 10 C -0.11 -1.63 6.50 32.06 0.21 -1.42 16 11 C -0.12 -1.56 6.95 31.78 0.22 -1.34 16 12 C 0.08 2.05 4.86 86.73 0.42 2.47 16 13 N -0.61 -21.36 3.13 -815.74 -2.55 -23.91 16 14 C 0.59 28.04 6.95 86.73 0.60 28.64 16 15 O -0.59 -32.23 14.12 18.07 0.26 -31.97 16 16 C -0.28 -14.60 5.89 -19.93 -0.12 -14.72 16 17 C -0.06 -3.28 9.52 22.25 0.21 -3.07 16 18 C -0.20 -11.82 8.65 22.47 0.19 -11.63 16 19 C 0.09 5.25 5.60 -21.28 -0.12 5.13 16 20 C -0.47 -24.79 9.08 23.46 0.21 -24.58 16 21 H 0.09 4.53 7.87 -2.91 -0.02 4.50 16 22 C 0.03 1.28 5.28 85.35 0.45 1.73 16 23 N -0.81 -43.07 10.55 21.87 0.23 -42.84 16 24 Si 1.00 37.21 29.58 68.60 2.03 39.23 16 25 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 26 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 27 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 28 C -0.25 -11.89 9.73 22.47 0.22 -11.67 16 29 C -0.08 -3.58 8.52 22.25 0.19 -3.39 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.04 1.17 6.17 -2.38 -0.01 1.16 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.03 1.32 6.17 -2.39 -0.01 1.31 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.41 5.61 8.47 -92.70 -0.79 4.83 16 40 H 0.07 1.25 8.06 -2.39 -0.02 1.23 16 41 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.07 1.91 6.64 -2.39 -0.02 1.90 16 45 H 0.08 2.05 6.80 -2.38 -0.02 2.03 16 46 H 0.08 4.60 7.64 -2.91 -0.02 4.58 16 47 H 0.11 6.74 5.86 -2.91 -0.02 6.72 16 48 H 0.29 13.90 8.29 -92.71 -0.77 13.13 16 49 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 50 H 0.17 5.91 2.69 -10.72 -0.03 5.88 16 Total: -1.00 -83.89 389.56 3.33 -80.56 By element: Atomic # 1 Polarization: 39.46 SS G_CDS: 0.16 Total: 39.62 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 5.17 Total: -18.99 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -4.48 Total: -84.64 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: 0.45 Total: -55.79 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.23 kcal Total: -83.89 3.33 -80.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928731099.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.066 kcal (2) G-P(sol) polarization free energy of solvation -83.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds