Wall clock time and date at job start Wed Apr 1 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47333 * 2 1 4 4 H 1.08998 * 110.53937 * 52.38453 * 3 2 1 5 5 C 1.54809 * 110.48835 * 289.76620 * 3 2 1 6 6 C 1.54994 * 102.09345 * 220.44411 * 5 3 2 7 7 O 1.44376 * 103.49388 * 37.02009 * 6 5 3 8 8 C 1.43743 * 106.97582 * 319.94303 * 7 6 5 9 9 H 1.08994 * 109.87649 * 266.93840 * 8 7 6 10 10 C 1.50700 * 109.87982 * 145.93066 * 8 7 6 11 11 O 1.21279 * 120.00026 * 356.45632 * 10 8 7 12 12 N 1.34778 * 120.00035 * 176.45036 * 10 8 7 13 13 C 1.46495 * 120.00133 * 180.02562 * 12 10 8 14 14 H 1.09006 * 110.88158 * 31.48684 * 13 12 10 15 15 C 1.54353 * 110.82327 * 267.97494 * 13 12 10 16 16 C 1.51366 * 105.16605 * 268.12206 * 15 13 12 17 17 C 1.38501 * 130.38890 * 162.81453 * 16 15 13 18 18 C 1.38108 * 120.21329 * 179.97438 * 17 16 15 19 19 C 1.38252 * 119.93685 * 0.02562 * 18 17 16 20 20 C 1.38103 * 119.93236 * 359.97438 * 19 18 17 21 21 C 1.38213 * 109.76365 * 342.80882 * 16 15 13 22 22 C 1.51378 * 109.75853 * 0.02562 * 21 16 15 23 23 H 1.08997 * 110.38430 * 136.15183 * 22 21 16 24 24 N 1.46499 * 110.30508 * 258.26516 * 22 21 16 25 25 C 1.36939 * 119.99933 * 271.02048 * 24 22 21 26 26 H 1.08001 * 119.99700 * 359.72658 * 25 24 22 27 27 C 1.38810 * 120.00095 * 179.71972 * 25 24 22 28 28 N 1.31624 * 119.99740 * 0.02562 * 27 25 24 29 29 Si 1.86796 * 120.00044 * 179.97438 * 27 25 24 30 30 H 1.48501 * 109.47173 * 60.00435 * 29 27 25 31 31 H 1.48497 * 109.47172 * 180.02562 * 29 27 25 32 32 H 1.48506 * 109.47132 * 300.00314 * 29 27 25 33 33 H 1.09001 * 109.47133 * 59.99907 * 1 2 3 34 34 H 1.08991 * 109.47293 * 180.02562 * 1 2 3 35 35 H 1.08997 * 109.46930 * 300.00470 * 1 2 3 36 36 H 1.08998 * 109.47280 * 239.99942 * 2 1 3 37 37 H 1.09001 * 109.47133 * 120.00093 * 2 1 3 38 38 H 1.09000 * 110.90870 * 102.24093 * 5 3 2 39 39 H 1.08999 * 110.90556 * 338.64091 * 5 3 2 40 40 H 1.09003 * 110.61456 * 278.52003 * 6 5 3 41 41 H 1.09000 * 110.75611 * 155.59360 * 6 5 3 42 42 H 0.97003 * 119.99582 * 0.02562 * 12 10 8 43 43 H 1.08997 * 110.30011 * 27.04317 * 15 13 12 44 44 H 1.08992 * 110.29965 * 149.19820 * 15 13 12 45 45 H 1.07996 * 119.89315 * 359.97416 * 17 16 15 46 46 H 1.07995 * 120.02908 * 180.02562 * 18 17 16 47 47 H 1.07998 * 120.03228 * 180.02562 * 19 18 17 48 48 H 1.08010 * 119.89013 * 180.02562 * 20 19 18 49 49 H 0.97001 * 119.99790 * 90.74021 * 24 22 21 50 50 H 0.96998 * 119.99409 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5802 2.0107 0.8085 5 6 1.7583 2.1168 -1.3647 6 6 3.0604 2.9229 -1.6035 7 8 4.0921 2.0593 -1.0801 8 6 3.5757 1.4716 0.1258 9 1 3.8679 2.0737 0.9861 10 6 4.1039 0.0686 0.2792 11 8 4.7988 -0.4160 -0.5886 12 7 3.8042 -0.6476 1.3809 13 6 4.3181 -2.0113 1.5303 14 1 5.2875 -2.1167 1.0430 15 6 3.3106 -3.0411 0.9764 16 6 2.4538 -3.4336 2.1609 17 6 1.2202 -4.0615 2.2074 18 6 0.6188 -4.3230 3.4228 19 6 1.2492 -3.9566 4.5975 20 6 2.4793 -3.3304 4.5531 21 6 3.0840 -3.0674 3.3353 22 6 4.4073 -2.4032 3.0204 23 1 4.5430 -1.5154 3.6380 24 7 5.5110 -3.3428 3.2328 25 6 6.1013 -3.4384 4.4648 26 1 5.7561 -2.8179 5.2785 27 6 7.1432 -4.3329 4.6676 28 7 7.5642 -5.0888 3.6757 29 14 7.9489 -4.4627 6.3479 30 1 6.9327 -4.8616 7.3546 31 1 9.0276 -5.4822 6.3022 32 1 8.5272 -3.1472 6.7226 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 -0.3633 0.5139 0.8899 36 1 1.8933 -0.5138 -0.8900 37 1 1.8933 -0.5139 0.8900 38 1 0.8961 2.7806 -1.3000 39 1 1.6146 1.3698 -2.1454 40 1 3.0343 3.8652 -1.0561 41 1 3.2137 3.1028 -2.6676 42 1 3.2482 -0.2600 2.0749 43 1 2.6960 -2.5882 0.1985 44 1 3.8366 -3.9118 0.5850 45 1 0.7270 -4.3477 1.2902 46 1 -0.3429 -4.8132 3.4556 47 1 0.7805 -4.1607 5.5488 48 1 2.9713 -3.0448 5.4713 49 1 5.8210 -3.9001 2.5019 50 1 8.2925 -5.7135 3.8174 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960278036.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:20 Heat of formation + Delta-G solvation = -36.362141 kcal Electronic energy + Delta-G solvation = -31456.275786 eV Core-core repulsion = 27448.589615 eV Total energy + Delta-G solvation = -4007.686171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.93206 -39.78500 -38.21724 -36.12641 -35.10487 -33.87773 -32.56740 -31.17158 -30.58209 -29.78349 -29.67403 -27.61411 -26.09787 -24.20411 -23.43656 -22.92215 -22.09150 -21.32602 -20.42740 -20.13894 -19.72839 -17.54735 -17.12954 -16.88866 -16.31858 -15.88324 -15.34493 -15.15053 -14.96899 -14.71437 -14.57916 -14.39797 -14.28459 -13.66121 -13.59465 -13.34283 -13.09341 -12.94769 -12.89055 -12.76731 -12.64818 -12.32385 -11.84888 -11.66271 -11.48508 -11.35681 -11.30373 -11.10184 -11.02844 -10.90913 -10.86835 -10.80931 -10.57211 -10.40162 -10.18773 -10.16899 -9.85916 -9.41919 -9.05921 -8.77794 -8.35226 -8.11525 -7.10505 -5.84833 -3.15318 1.80675 1.85847 2.70063 2.96233 3.39948 3.44334 3.45616 3.84431 4.13196 4.20233 4.37133 4.51216 4.55800 4.71997 4.82665 4.90574 4.95415 5.05123 5.13350 5.17652 5.21521 5.32651 5.36726 5.40922 5.44785 5.47976 5.51402 5.54689 5.59362 5.61024 5.74993 5.77336 5.88624 5.90782 5.95659 5.98067 6.09214 6.11467 6.20046 6.26982 6.34993 6.47609 6.53315 6.61426 6.78699 6.88191 6.95536 7.21077 7.45903 7.60928 7.62230 8.30997 8.35671 9.43157 9.94339 10.29820 11.36776 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011391 B = 0.003639 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.457713 B = 7693.502280 C = 9405.949000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C -0.111 4.111 4 H 0.093 0.907 5 C -0.148 4.148 6 C 0.043 3.957 7 O -0.346 6.346 8 C 0.061 3.939 9 H 0.094 0.906 10 C 0.519 3.481 11 O -0.517 6.517 12 N -0.712 5.712 13 C 0.136 3.864 14 H 0.110 0.890 15 C -0.088 4.088 16 C -0.095 4.095 17 C -0.114 4.114 18 C -0.132 4.132 19 C -0.128 4.128 20 C -0.090 4.090 21 C -0.093 4.093 22 C 0.207 3.793 23 H 0.064 0.936 24 N -0.703 5.703 25 C -0.246 4.246 26 H 0.072 0.928 27 C -0.006 4.006 28 N -0.926 5.926 29 Si 0.909 3.091 30 H -0.285 1.285 31 H -0.290 1.290 32 H -0.284 1.284 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.399 0.601 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.388 0.612 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.814 13.534 -6.464 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C -0.130 4.130 4 H 0.111 0.889 5 C -0.185 4.185 6 C -0.034 4.034 7 O -0.264 6.264 8 C -0.001 4.001 9 H 0.111 0.889 10 C 0.304 3.696 11 O -0.391 6.391 12 N -0.366 5.366 13 C 0.031 3.969 14 H 0.128 0.872 15 C -0.126 4.126 16 C -0.096 4.096 17 C -0.132 4.132 18 C -0.150 4.150 19 C -0.146 4.146 20 C -0.109 4.109 21 C -0.097 4.097 22 C 0.095 3.905 23 H 0.082 0.918 24 N -0.342 5.342 25 C -0.377 4.377 26 H 0.090 0.910 27 C -0.203 4.203 28 N -0.573 5.573 29 Si 0.739 3.261 30 H -0.212 1.212 31 H -0.216 1.216 32 H -0.211 1.211 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.235 0.765 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.127 0.873 46 H 0.131 0.869 47 H 0.132 0.868 48 H 0.134 0.866 49 H 0.223 0.777 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.919 13.144 -7.035 22.550 hybrid contribution -0.019 -0.327 1.242 1.284 sum -16.938 12.817 -5.793 22.016 Atomic orbital electron populations 1.21726 0.95284 1.01940 1.01460 1.22142 0.96624 0.94704 1.04311 1.22569 0.93083 0.98454 0.98941 0.88908 1.23232 0.98462 0.99841 0.97009 1.23624 0.86405 0.93217 1.00110 1.89027 1.37526 1.61002 1.38801 1.22753 0.93727 0.92986 0.90596 0.88871 1.20222 0.80271 0.86897 0.82174 1.90734 1.36620 1.71225 1.40565 1.46019 1.53380 1.15585 1.21602 1.21922 0.97879 0.79582 0.97555 0.87176 1.21439 0.96451 0.99117 0.95625 1.20505 0.94430 0.98907 0.95765 1.20465 0.95046 1.00288 0.97395 1.20837 0.99882 1.01750 0.92544 1.20961 0.95901 0.99990 0.97735 1.20613 0.94337 0.98582 0.97379 1.21746 0.96249 0.99008 0.92697 1.19846 0.85603 0.93237 0.91784 0.91838 1.42267 1.34661 1.45205 1.12039 1.19137 1.11992 1.18096 0.88470 0.91035 1.24766 0.99135 0.98715 0.97648 1.69656 1.30116 1.26908 1.30618 0.86257 0.78913 0.77356 0.83566 1.21156 1.21601 1.21095 0.93006 0.92448 0.92722 0.91387 0.89260 0.89949 0.90077 0.91972 0.88652 0.76524 0.90925 0.89460 0.87268 0.86894 0.86793 0.86619 0.77733 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.79 37.16 0.36 -0.80 16 2 C -0.14 -1.33 3.93 -26.73 -0.11 -1.44 16 3 C -0.11 -0.94 3.04 -89.09 -0.27 -1.21 16 4 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 5 C -0.15 -1.12 6.03 -24.72 -0.15 -1.27 16 6 C 0.04 0.37 7.72 38.21 0.29 0.67 16 7 O -0.35 -4.64 10.74 -54.80 -0.59 -5.23 16 8 C 0.06 0.70 3.84 -27.31 -0.10 0.59 16 9 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 10 C 0.52 7.70 5.66 -10.98 -0.06 7.64 16 11 O -0.52 -10.11 16.17 -14.01 -0.23 -10.33 16 12 N -0.71 -9.59 3.31 -52.45 -0.17 -9.77 16 13 C 0.14 2.27 3.03 -66.53 -0.20 2.06 16 14 H 0.11 2.17 7.48 -51.93 -0.39 1.78 16 15 C -0.09 -1.38 6.48 -26.85 -0.17 -1.56 16 16 C -0.10 -1.53 6.14 -104.21 -0.64 -2.17 16 17 C -0.11 -1.65 10.04 -39.53 -0.40 -2.05 16 18 C -0.13 -1.83 10.05 -39.62 -0.40 -2.23 16 19 C -0.13 -1.89 10.05 -39.63 -0.40 -2.29 16 20 C -0.09 -1.54 10.04 -39.54 -0.40 -1.93 16 21 C -0.09 -1.65 5.77 -104.20 -0.60 -2.25 16 22 C 0.21 3.91 3.13 -68.05 -0.21 3.69 16 23 H 0.06 1.18 8.04 -51.93 -0.42 0.77 16 24 N -0.70 -16.96 5.13 -53.55 -0.27 -17.23 16 25 C -0.25 -6.56 9.96 -15.06 -0.15 -6.71 16 26 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 27 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 28 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 29 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 30 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 31 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 32 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 33 H 0.05 0.37 7.63 -51.93 -0.40 -0.03 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.79 7.70 -51.93 -0.40 0.39 16 37 H 0.09 0.92 4.61 -51.93 -0.24 0.68 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.68 7.77 -51.93 -0.40 0.28 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.40 4.38 7.76 -40.82 -0.32 4.06 16 43 H 0.07 1.04 7.61 -51.93 -0.40 0.64 16 44 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 45 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 46 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 47 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 48 H 0.12 1.97 8.06 -52.48 -0.42 1.54 16 49 H 0.39 10.13 7.82 -40.82 -0.32 9.81 16 50 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 399.37 15.07 6.02 6.02 Total: -1.00 -32.90 399.37 -11.14 -44.04 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -7.89 Total: 13.86 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -3.70 Total: -11.49 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.28 Total: -53.79 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.81 Total: -15.56 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.90 -11.14 -44.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960278036.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.675 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds